Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006500

Physical Location & Seq

Genomic Coordinates Forward (+)

3394509 .. 3398534

Gene Structure 4026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G048100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGTCGTTTTTGGTCAAGACCACTAACTGTCACCATTTATCTTCCACTGCCATGGCAATGTGTTCAAGCTTTTGCCCTCATCTTCCAAACCACTTTGGAGGGAGACCTGCTTACTCATTCCCAACAAAACCACTTTCTTTTTCTTTCAAGGCTTTCTCTTCTCAAGCATCCAATGCTTCATCCAAAGATGAATTGACAACTCGTGTGGGTTTCCTTGGCCTCGGAATTATGGGTTCTCCGATGGCACAGAACCTCATAAAATCTGGGTGTGATGTGACTGTTTGGAATAGGACCAAGAGCAAATGTGATCCACTCATCAGCTTAGGTGCAAAATATAAACCCTCTCCTGAGGAAGTCGCTGCATCTTGTGATGTCACATTTGCCATGCTTGCTGACCCTGAAAGTGCTCTTGATGTTGCTTTGGGGAAGCATGGAGCTGCAAATGGGTTGAATTCAGGAAAAGGGTATGTGGATGTTTCAACTGTTGATGGTGCAACTTCAAAATTGATTAGTGGACATATCAAATCCACTGGGGCATCATTTTTGGAGGCTCCAGTTTCGGGCTCAAAAAAGCCAGCAGAAGATGGACAACTAATTTTTCTCGCTGCAGGTGACAAATCTCTCTATCAAATAGCAGCACCGCTTTTAGATGTCATGGGGAAGTCAAGATTTTACCTTGGGGATGTCGGAAATGGTGCTGCTATGAAACTTGTTGTGAACATGATCATGGGAAGTATGATGGCATCATTTTCTGAAGGCTTGCTACTCACTGAGAAAATAGGACTGGACCCAAAAGTACTAGTTGAGGTCGTCTCGCAAGGAGCCATTAGTGCACCAATGTACTCGGTCAAGGGCCCATCAATGATTCAGTCCCTCTATCCTACTGCATTTCCCTTGAAGCATCAACAAAAGGACCTGAGGCTTGCTCTGGGATTAGCAGAATCTGTTTCCCAATCCACGCCAATCGCAGCGGCTGCAAATGAACTATACAAGGTAGCAAAATCACATGGGCTCAGCGACGAGGACTTTTCAGCTGTCATTGAAGCGTTGAAACCAAAGTTGCAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016491 GO:0016614 GO:0016616 GO:0030267 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00630 ko00650 ko01100 ko01120 ko01200 map00630 map00650 map01100 map01120 map01200

Pfam Domains

Protein Families

NAD_binding_11 NAD_binding_2

Protein Analysis

357

Amino Acids

37.41

Weight (kDa)

8.4

Isoelectric Point (pI)

32.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17650 AT1G17650
fragaria_vesca	FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660
malus_domestica	MD09G1191900.v1.1
prunus_persica	Prupe.3G048100_v2.0.a1 Prupe.3G048100_v2.0.a1
pyrus_communis	pycom09g10840
rosa_chinensis	RchiOBHm_Chr2g0143571
rosa_laevigata	RLG00000020047
rosa_multiflora	Rmu_co8457181.1_g000001 Rmu_sc0005308.1_g000001 Rmu_ssc0000231.1_g000008 Rmu_ssc0000231.1_g000012
rosa_roxburghii	Rroxscaffold_2G00101650
rosa_rugosa	Rorug02G0383900
rosa_samantha	Rh2AG435800 Rh2BG443400 Rh2CG421900 Rh2DG453800
rosa_wichuraiana	Rw2G035510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	599
Acc36I	ACCTGC	2 cut(s)	115, 599
AciI	CCGC	2 cut(s)	641, 971
AclWI	GGATC	1 cut(s)	302
AcsI	RAATTY	1 cut(s)	451
AcuI	CTGAAG	1 cut(s)	774
AfaI	GTAC	2 cut(s)	798, 842
AfiI	CCNNNNNNNGG	1 cut(s)	560
AgsI	TTSAA	8 cut(s)	66, 148, 451, 480, 501, 898, 1043, 1051
AhlI	ACTAGT	1 cut(s)	799
AluBI	AGCT	4 cut(s)	69, 321, 437, 1034
AluI	AGCT	4 cut(s)	69, 321, 437, 1034
Alw21I	GWGCWC	2 cut(s)	409, 835
Alw26I	GTCTC	2 cut(s)	97, 817
Alw44I	GTGCAC	1 cut(s)	831
AlwI	GGATC	1 cut(s)	302
AlwNI	CAGNNNCTG	2 cut(s)	944, 974
AoxI	GGCC	2 cut(s)	217, 853
ApaI	GGGCCC	1 cut(s)	857
ApaLI	GTGCAC	1 cut(s)	831
ApeKI	GCWGC	8 cut(s)	359, 437, 605, 635, 698, 968, 974, 1063
ApoI	RAATTY	1 cut(s)	451
AspS9I	GGNCC	5 cut(s)	291, 787, 853, 854, 913
AsuHPI	GGTGA	2 cut(s)	23, 623
AvaII	GGWCC	3 cut(s)	291, 787, 913
AxyI	CCTNAGG	2 cut(s)	348, 917
BaeGI	GKGCMC	2 cut(s)	835, 857
BanII	GRGCYC	3 cut(s)	566, 857, 1014
BarI	GAAGNNNNNNTAC	2 cut(s)	747, 779
BauI	CACGAG	1 cut(s)	201
Bbv12I	GWGCWC	2 cut(s)	409, 835
BbvI	GCAGC	7 cut(s)	346, 424, 592, 647, 685, 961, 980
BccI	CCATC	5 cut(s)	235, 482, 578, 733, 865
BclI	TGATCA	1 cut(s)	723
BcoDI	GTCTC	2 cut(s)	97, 817
BcuI	ACTAGT	1 cut(s)	799
BfaI	CTAG	1 cut(s)	800
BfmI	CTRYAG	1 cut(s)	606
BfuAI	ACCTGC	2 cut(s)	115, 599
BisI	GCNGC	9 cut(s)	360, 438, 606, 636, 699, 969, 972, 975, 1064
BlpI	GCTNAGC	1 cut(s)	1013
BlsI	GCNGC	9 cut(s)	361, 439, 607, 637, 700, 970, 973, 976, 1065
BmcAI	AGTACT	1 cut(s)	798
Bme18I	GGWCC	3 cut(s)	291, 787, 913
BmgT120I	GGNCC	5 cut(s)	291, 787, 853, 854, 913
BmiI	GGNNCC	4 cut(s)	552, 789, 823, 855
BmrI	ACTGGG	1 cut(s)	540
BmsI	GCATC	5 cut(s)	176, 371, 545, 752, 910
BmuI	ACTGGG	1 cut(s)	540
BplI	GAGNNNNNCTC	4 cut(s)	797, 829, 910, 942
BpmI	CTGGAG	1 cut(s)	537
Bpu10I	CCTNAGC	1 cut(s)	322
Bpu1102I	GCTNAGC	1 cut(s)	1013
BpuEI	CTTGAG	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	97
BsaJI	CCNNGG	4 cut(s)	51, 214, 220, 676
Bsc4I	CCNNNNNNNGG	1 cut(s)	560
Bse1I	ACTGG	3 cut(s)	535, 554, 789
Bse21I	CCTNAGG	2 cut(s)	348, 917
Bse3DI	GCAATG	1 cut(s)	63
BseDI	CCNNGG	4 cut(s)	51, 214, 220, 676
BseGI	GGATG	4 cut(s)	167, 179, 478, 688
BseLI	CCNNNNNNNGG	1 cut(s)	560
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	4 cut(s)	339, 762, 908, 1027
BseNI	ACTGG	3 cut(s)	535, 554, 789
BseSI	GKGCMC	2 cut(s)	835, 857
BseXI	GCAGC	7 cut(s)	346, 424, 592, 647, 685, 961, 980
BshFI	GGCC	2 cut(s)	219, 855
BsiHKAI	GWGCWC	2 cut(s)	409, 835
BslFI	GGGAC	1 cut(s)	856
BslI	CCNNNNNNNGG	1 cut(s)	560
BsmAI	GTCTC	2 cut(s)	97, 817
BsmBI	CGTCTC	1 cut(s)	817
BsmFI	GGGAC	1 cut(s)	856
BsnI	GGCC	2 cut(s)	219, 855
Bso31I	GGTCTC	1 cut(s)	97
Bsp120I	GGGCCC	1 cut(s)	853
Bsp1286I	GDGCHC	5 cut(s)	409, 566, 835, 857, 1014
Bsp143I	GATC	2 cut(s)	307, 723
Bsp1720I	GCTNAGC	1 cut(s)	1013
Bsp19I	CCATGG	1 cut(s)	51
BspACI	CCGC	2 cut(s)	641, 971
BspANI	GGCC	2 cut(s)	219, 855
BspCNI	CTCAG	4 cut(s)	340, 763, 909, 1026
BspLI	GGNNCC	4 cut(s)	552, 789, 823, 855
BspMAI	CTGCAG	1 cut(s)	610
BspMI	ACCTGC	2 cut(s)	115, 599
BspPI	GGATC	1 cut(s)	302
BspTNI	GGTCTC	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	63
BsrI	ACTGG	3 cut(s)	535, 554, 789
BssECI	CCNNGG	4 cut(s)	51, 214, 220, 676
BssMI	GATC	2 cut(s)	307, 723
BssSI	CACGAG	1 cut(s)	201
BssT1I	CCWWGG	3 cut(s)	51, 214, 676
Bst2BI	CACGAG	1 cut(s)	201
Bst4CI	ACNGT	3 cut(s)	29, 280, 484
Bst6I	CTCTTC	1 cut(s)	163
BstAPI	GCANNNNNTGC	2 cut(s)	173, 974
BstC8I	GCNNGC	4 cut(s)	390, 576, 761, 924
BstDEI	CTNAG	5 cut(s)	322, 348, 771, 917, 1013
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	4 cut(s)	167, 179, 478, 688
BstKTI	GATC	2 cut(s)	310, 726
BstMAI	GTCTC	2 cut(s)	97, 817
BstMBI	GATC	2 cut(s)	307, 723
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 389, 830, 974
BstSFI	CTRYAG	1 cut(s)	606
BstSLI	GKGCMC	2 cut(s)	835, 857
BstV1I	GCAGC	7 cut(s)	346, 424, 592, 647, 685, 961, 980
BstXI	CCANNNNNNTGG	1 cut(s)	52
Bsu36I	CCTNAGG	2 cut(s)	348, 917
BsuRI	GGCC	2 cut(s)	219, 855
BtgI	CCRYGG	1 cut(s)	51
BtsCI	GGATG	4 cut(s)	167, 179, 478, 688
BtsI	GCAGTG	1 cut(s)	45
BtsIMutI	CAGTG	3 cut(s)	45, 528, 768
BveI	ACCTGC	2 cut(s)	115, 599
Cac8I	GCNNGC	4 cut(s)	390, 576, 761, 924
CaiI	CAGNNNCTG	2 cut(s)	944, 974
Cfr13I	GGNCC	5 cut(s)	291, 787, 853, 854, 913
Csp6I	GTAC	2 cut(s)	797, 841
CspCI	CAANNNNNGTGG	2 cut(s)	186, 221
CviAII	CATG	7 cut(s)	52, 385, 431, 655, 721, 727, 1007
CviQI	GTAC	2 cut(s)	797, 841
DdeI	CTNAG	5 cut(s)	322, 348, 771, 917, 1013
DpnI	GATC	2 cut(s)	309, 725
DpnII	GATC	2 cut(s)	307, 723
Eam1104I	CTCTTC	1 cut(s)	163
EarI	CTCTTC	1 cut(s)	163
Eco130I	CCWWGG	3 cut(s)	51, 214, 676
Eco24I	GRGCYC	3 cut(s)	566, 857, 1014
Eco31I	GGTCTC	1 cut(s)	97
Eco47I	GGWCC	3 cut(s)	291, 787, 913
Eco57I	CTGAAG	1 cut(s)	774
Eco81I	CCTNAGG	2 cut(s)	348, 917
EcoO109I	RGGNCCY	2 cut(s)	853, 913
EcoRI	GAATTC	1 cut(s)	451
EcoT14I	CCWWGG	3 cut(s)	51, 214, 676
EcoT38I	GRGCYC	3 cut(s)	566, 857, 1014
ErhI	CCWWGG	3 cut(s)	51, 214, 676
Esp3I	CGTCTC	1 cut(s)	817
FaeI	CATG	7 cut(s)	55, 388, 434, 658, 724, 730, 1010
FaqI	GGGAC	1 cut(s)	856
FatI	CATG	7 cut(s)	51, 384, 430, 654, 720, 726, 1006
FbaI	TGATCA	1 cut(s)	723
Fnu4HI	GCNGC	9 cut(s)	360, 438, 606, 636, 699, 969, 972, 975, 1064
FokI	GGATG	4 cut(s)	154, 166, 485, 695
FriOI	GRGCYC	3 cut(s)	566, 857, 1014
Fsp4HI	GCNGC	9 cut(s)	360, 438, 606, 636, 699, 969, 972, 975, 1064
FspBI	CTAG	1 cut(s)	800
GluI	GCNGC	9 cut(s)	360, 438, 606, 636, 699, 969, 972, 975, 1064
GsuI	CTGGAG	1 cut(s)	537
HaeIII	GGCC	2 cut(s)	219, 855
Hin1II	CATG	7 cut(s)	55, 388, 434, 658, 724, 730, 1010
HindIII	AAGCTT	1 cut(s)	67
HinfI	GANTC	2 cut(s)	865, 941
HphI	GGTGA	2 cut(s)	23, 623
Hpy166II	GTNNAC	3 cut(s)	515, 718, 833
Hpy188I	TCNGA	4 cut(s)	224, 240, 689, 754
Hpy188III	TCNNGA	5 cut(s)	16, 347, 410, 456, 666
Hpy8I	GTNNAC	3 cut(s)	515, 718, 833
Hpy99I	CGWCG	1 cut(s)	1022
HpyAV	CCTTC	1 cut(s)	749
HpyCH4III	ACNGT	3 cut(s)	29, 280, 484
HpyCH4V	TGCA	9 cut(s)	329, 362, 440, 494, 608, 833, 887, 977, 1063
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 389, 830, 974
HpyF3I	CTNAG	5 cut(s)	322, 348, 771, 917, 1013
Hsp92II	CATG	7 cut(s)	55, 388, 434, 658, 724, 730, 1010
Ksp22I	TGATCA	1 cut(s)	723
Kzo9I	GATC	2 cut(s)	307, 723
LmnI	GCTCC	3 cut(s)	434, 556, 821
Lsp1109I	GCAGC	7 cut(s)	346, 424, 592, 647, 685, 961, 980
LweI	GCATC	5 cut(s)	176, 371, 545, 752, 910
MaeI	CTAG	1 cut(s)	800
MaeIII	GTNAC	4 cut(s)	29, 274, 373, 611
MalI	GATC	2 cut(s)	309, 725
MboI	GATC	2 cut(s)	307, 723
MboII	GAAGA	4 cut(s)	33, 74, 150, 593
MhlI	GDGCHC	5 cut(s)	409, 566, 835, 857, 1014
MluCI	AATT	5 cut(s)	191, 225, 451, 503, 594
MmeI	TCCRAC	1 cut(s)	667
MslI	CAYNNNNRTG	3 cut(s)	50, 56, 725
MspA1I	CMGCKG	2 cut(s)	971, 1034
MwoI	GCNNNNNNNGC	4 cut(s)	173, 389, 830, 974
NcoI	CCATGG	1 cut(s)	51
NdeII	GATC	2 cut(s)	307, 723
NlaIII	CATG	7 cut(s)	55, 388, 434, 658, 724, 730, 1010
NlaIV	GGNNCC	4 cut(s)	552, 789, 823, 855
NmuCI	GTSAC	4 cut(s)	29, 274, 373, 611
PaqCI	CACCTGC	1 cut(s)	599
PfeI	GAWTC	2 cut(s)	865, 941
PkrI	GCNGC	9 cut(s)	361, 439, 607, 637, 700, 970, 973, 976, 1065
PpuMI	RGGWCCY	1 cut(s)	913
Psp5II	RGGWCCY	1 cut(s)	913
PspN4I	GGNNCC	4 cut(s)	552, 789, 823, 855
PspOMI	GGGCCC	1 cut(s)	853
PspPI	GGNCC	5 cut(s)	291, 787, 853, 854, 913
PspPPI	RGGWCCY	1 cut(s)	913
PstI	CTGCAG	1 cut(s)	610
PstNI	CAGNNNCTG	2 cut(s)	944, 974
PvuII	CAGCTG	1 cut(s)	1034
RsaI	GTAC	2 cut(s)	798, 842
RsaNI	GTAC	2 cut(s)	797, 841
RseI	CAYNNNNRTG	3 cut(s)	50, 56, 725
SatI	GCNGC	9 cut(s)	360, 438, 606, 636, 699, 969, 972, 975, 1064
Sau3AI	GATC	2 cut(s)	307, 723
Sau96I	GGNCC	5 cut(s)	291, 787, 853, 854, 913
ScaI	AGTACT	1 cut(s)	798
SduI	GDGCHC	5 cut(s)	409, 566, 835, 857, 1014
SfaNI	GCATC	5 cut(s)	176, 371, 545, 752, 910
SfcI	CTRYAG	1 cut(s)	606
SinI	GGWCC	3 cut(s)	291, 787, 913
SmiMI	CAYNNNNRTG	3 cut(s)	50, 56, 725
SmlI	CTYRAG	1 cut(s)	162
SmoI	CTYRAG	1 cut(s)	162
SpeI	ACTAGT	1 cut(s)	799
Sse9I	AATT	5 cut(s)	191, 225, 451, 503, 594
SsiI	CCGC	2 cut(s)	641, 971
SspMI	CTAG	1 cut(s)	800
StyI	CCWWGG	3 cut(s)	51, 214, 676
TaaI	ACNGT	3 cut(s)	29, 280, 484
TaqII	GACCGA	1 cut(s)	835
TasI	AATT	5 cut(s)	191, 225, 451, 503, 594
TatI	WGTACW	2 cut(s)	796, 840
TauI	GCSGC	1 cut(s)	974
TfiI	GAWTC	2 cut(s)	865, 941
TscAI	CASTG	3 cut(s)	52, 535, 775
TseFI	GTSAC	4 cut(s)	29, 274, 373, 611
TseI	GCWGC	8 cut(s)	359, 437, 605, 635, 698, 968, 974, 1063
Tsp45I	GTSAC	4 cut(s)	29, 274, 373, 611
TspDTI	ATGAA	4 cut(s)	168, 204, 719, 996
TspRI	CASTG	3 cut(s)	52, 535, 775
VneI	GTGCAC	1 cut(s)	831
VpaK11BI	GGWCC	3 cut(s)	291, 787, 913
XapI	RAATTY	1 cut(s)	451
XspI	CTAG	1 cut(s)	800
ZrmI	AGTACT	1 cut(s)	798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.