Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0006500

Physical Location & Seq

Genomic Coordinates Forward (+)

8902721 .. 8906758

Gene Structure 4038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g10840.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGTCCTTGTTGGTAAAGACCACCAACTGTTCCCGTTTATCTTCAACCGCCATGGCAGTGTGCTTGAGCTTTTGCCTTCACATTCCAACCCGCCTTACAAAATCATTCCCTGCAAAGCCACACTCTCTCTCTTTCAAGGCTTTCTCTTCTCAAGCATCCAATGCTTCATCCAAAGATGAGTTGCCAGCACGCGTGGGGTTCCTAGGCCTCGGAATTATGGGTTCTCCAATGGCACAGAACCTCATAAAATCTGGGTGTGATGTGACTGTTTGGAATAGGACCAAAAGCAAATGTGATCCGCTTATCAGCTTAGGTGCAAAATATAAACCCTCTCCTGAGGAAGTGGCTGCATCTTGTGATGTCACATTTGCCATGCTTGCCGACCCTGAAAGTGCTGTTGCTGTTGCTTTGGGGAAGCATGGAGCTGCCAATGGAATGAGTTCAGGAAAAGGGTATGTGGATGTTTCAACTGTTGATGTTGCAACTTCTAAATTGATTGGCGGAAATATCAAAGCTACTGGGGCATCGTTTTTAGAGGCAAGCTGCTTTTGTGACAAATCTCTGTATGAAACAGTAGCATCCCTTTTGGATATCATGGGGAAGTCAAGATTTTACCTTGGGGAGGTCGGAAATGGTGCTGCTATGAAACTTGTTGTCAACATGATTATGGGAAGTATGATGGCATCCTTTTCTGAGGGCTTGCTTCTCACTGAGAAAATAGGACTGGACCCGAAAGTACTAGTTGAGGTCGTCTCACAGGGAGCCATTAGTGCACCAATGTACTCAATGAAAGGCCCATCAATGATTCAATCCGTCTATCCTACCGCATTTCCCTTGAAGCATCAACAGAAGGACATGAGGCTTGCTCTGGCATTAGCAGAATCTGTTTCCCAATCTACACCGATTGCAGCAGCTGCAAATGAACTATACAAGGTCGCAAAATCACACGGCCTCAGCGACGAGGACTTTTCAGCGGTCATTGAAGCATTGAAACCGAAATTGAAGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016491 GO:0016614 GO:0016616 GO:0030267 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00630 ko00650 ko01100 ko01120 ko01200 map00630 map00650 map01100 map01120 map01200

Pfam Domains

Protein Families

NAD_binding_11 NAD_binding_2

Protein Analysis

337

Amino Acids

35.35

Weight (kDa)

8.79

Isoelectric Point (pI)

32.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17650 AT1G17650
fragaria_vesca	FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660
malus_domestica	MD09G1191900.v1.1
prunus_persica	Prupe.3G048100_v2.0.a1 Prupe.3G048100_v2.0.a1
pyrus_communis	pycom09g10840
rosa_chinensis	RchiOBHm_Chr2g0143571
rosa_laevigata	RLG00000020047
rosa_multiflora	Rmu_co8457181.1_g000001 Rmu_sc0005308.1_g000001 Rmu_ssc0000231.1_g000008 Rmu_ssc0000231.1_g000012
rosa_roxburghii	Rroxscaffold_2G00101650
rosa_rugosa	Rorug02G0383900
rosa_samantha	Rh2AG435800 Rh2BG443400 Rh2CG421900 Rh2DG453800
rosa_wichuraiana	Rw2G035510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	192
AciI	CCGC	6 cut(s)	48, 91, 299, 501, 825, 974
AclWI	GGATC	1 cut(s)	290
AfaI	GTAC	2 cut(s)	738, 782
AfiI	CCNNNNNNNGG	1 cut(s)	622
AflIII	ACRYGT	1 cut(s)	190
AgsI	TTSAA	8 cut(s)	45, 136, 468, 809, 838, 983, 991, 1003
AhlI	ACTAGT	1 cut(s)	739
AluBI	AGCT	6 cut(s)	69, 309, 425, 515, 543, 914
AluI	AGCT	6 cut(s)	69, 309, 425, 515, 543, 914
Alw21I	GWGCWC	1 cut(s)	775
Alw26I	GTCTC	1 cut(s)	757
Alw44I	GTGCAC	1 cut(s)	771
AlwI	GGATC	1 cut(s)	290
AlwNI	CAGNNNCTG	2 cut(s)	884, 914
AoxI	GGCC	3 cut(s)	205, 793, 949
ApaLI	GTGCAC	1 cut(s)	771
ApeKI	GCWGC	7 cut(s)	347, 425, 543, 638, 908, 911, 914
Asp700I	GAANNNNTTC	1 cut(s)	439
AspA2I	CCTAGG	1 cut(s)	202
AspS9I	GGNCC	3 cut(s)	279, 727, 794
AvaII	GGWCC	2 cut(s)	279, 727
AvrII	CCTAGG	1 cut(s)	202
AxyI	CCTNAGG	1 cut(s)	336
BaeGI	GKGCMC	1 cut(s)	775
Bbv12I	GWGCWC	1 cut(s)	775
BbvCI	CCTCAGC	1 cut(s)	953
BbvI	GCAGC	7 cut(s)	334, 412, 530, 625, 901, 920, 923
BccI	CCATC	2 cut(s)	673, 805
BceAI	ACGGC	1 cut(s)	964
BcoDI	GTCTC	1 cut(s)	757
BcuI	ACTAGT	1 cut(s)	739
BfaI	CTAG	3 cut(s)	203, 740, 1009
BisI	GCNGC	7 cut(s)	348, 426, 544, 639, 909, 912, 915
BlnI	CCTAGG	1 cut(s)	202
BlsI	GCNGC	7 cut(s)	349, 427, 545, 640, 910, 913, 916
BmcAI	AGTACT	1 cut(s)	738
Bme18I	GGWCC	2 cut(s)	279, 727
BmgT120I	GGNCC	3 cut(s)	279, 727, 794
BmiI	GGNNCC	3 cut(s)	200, 729, 763
BmrI	ACTGGG	1 cut(s)	528
BmsI	GCATC	6 cut(s)	164, 359, 533, 587, 692, 850
BmuI	ACTGGG	1 cut(s)	528
BplI	GAGNNNNNCTC	4 cut(s)	737, 769, 850, 882
Bpu10I	CCTNAGC	2 cut(s)	310, 953
BpuEI	CTTGAG	2 cut(s)	85, 135
BsaJI	CCNNGG	4 cut(s)	51, 202, 208, 616
Bsc4I	CCNNNNNNNGG	1 cut(s)	622
Bse1I	ACTGG	2 cut(s)	523, 729
Bse21I	CCTNAGG	1 cut(s)	336
BseDI	CCNNGG	4 cut(s)	51, 202, 208, 616
BseGI	GGATG	5 cut(s)	155, 167, 466, 578, 683
BseLI	CCNNNNNNNGG	1 cut(s)	622
BseMII	CTCAG	4 cut(s)	327, 684, 702, 967
BseNI	ACTGG	2 cut(s)	523, 729
BseSI	GKGCMC	1 cut(s)	775
BseXI	GCAGC	7 cut(s)	334, 412, 530, 625, 901, 920, 923
Bsh1236I	CGCG	1 cut(s)	192
BshFI	GGCC	3 cut(s)	207, 795, 951
BsiHKAI	GWGCWC	1 cut(s)	775
BslI	CCNNNNNNNGG	1 cut(s)	622
BsmAI	GTCTC	1 cut(s)	757
BsmBI	CGTCTC	1 cut(s)	757
BsnI	GGCC	3 cut(s)	207, 795, 951
Bsp1286I	GDGCHC	1 cut(s)	775
Bsp143I	GATC	1 cut(s)	295
Bsp19I	CCATGG	1 cut(s)	51
BspACI	CCGC	6 cut(s)	48, 91, 299, 501, 825, 974
BspANI	GGCC	3 cut(s)	207, 795, 951
BspCNI	CTCAG	4 cut(s)	328, 685, 703, 966
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	3 cut(s)	200, 729, 763
BspPI	GGATC	1 cut(s)	290
BsrI	ACTGG	2 cut(s)	523, 729
BssECI	CCNNGG	4 cut(s)	51, 202, 208, 616
BssMI	GATC	1 cut(s)	295
BssT1I	CCWWGG	3 cut(s)	51, 202, 616
Bst4CI	ACNGT	4 cut(s)	29, 268, 472, 574
Bst6I	CTCTTC	1 cut(s)	151
BstAPI	GCANNNNNTGC	2 cut(s)	161, 914
BstC8I	GCNNGC	6 cut(s)	186, 190, 378, 541, 701, 864
BstDEI	CTNAG	5 cut(s)	310, 336, 693, 711, 953
BstDSI	CCRYGG	1 cut(s)	51
BstENI	CCTNNNNNAGG	1 cut(s)	620
BstF5I	GGATG	5 cut(s)	155, 167, 466, 578, 683
BstFNI	CGCG	1 cut(s)	192
BstKTI	GATC	1 cut(s)	298
BstMAI	GTCTC	1 cut(s)	757
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	5 cut(s)	161, 377, 521, 770, 914
BstSLI	GKGCMC	1 cut(s)	775
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	7 cut(s)	334, 412, 530, 625, 901, 920, 923
Bsu36I	CCTNAGG	1 cut(s)	336
BsuRI	GGCC	3 cut(s)	207, 795, 951
BtgI	CCRYGG	1 cut(s)	51
BtsCI	GGATG	5 cut(s)	155, 167, 466, 578, 683
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	2 cut(s)	63, 708
Cac8I	GCNNGC	6 cut(s)	186, 190, 378, 541, 701, 864
CaiI	CAGNNNCTG	2 cut(s)	884, 914
Cfr13I	GGNCC	3 cut(s)	279, 727, 794
Csp6I	GTAC	2 cut(s)	737, 781
CviAII	CATG	6 cut(s)	52, 373, 419, 595, 661, 856
CviQI	GTAC	2 cut(s)	737, 781
DdeI	CTNAG	5 cut(s)	310, 336, 693, 711, 953
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
EciI	GGCGGA	1 cut(s)	516
Eco130I	CCWWGG	3 cut(s)	51, 202, 616
Eco147I	AGGCCT	1 cut(s)	207
Eco32I	GATATC	1 cut(s)	592
Eco47I	GGWCC	2 cut(s)	279, 727
Eco81I	CCTNAGG	1 cut(s)	336
EcoNI	CCTNNNNNAGG	1 cut(s)	620
EcoRV	GATATC	1 cut(s)	592
EcoT14I	CCWWGG	3 cut(s)	51, 202, 616
ErhI	CCWWGG	3 cut(s)	51, 202, 616
Esp3I	CGTCTC	1 cut(s)	757
FaeI	CATG	6 cut(s)	55, 376, 422, 598, 664, 859
FatI	CATG	6 cut(s)	51, 372, 418, 594, 660, 855
FauI	CCCGC	1 cut(s)	98
Fnu4HI	GCNGC	7 cut(s)	348, 426, 544, 639, 909, 912, 915
FokI	GGATG	5 cut(s)	142, 154, 473, 565, 670
Fsp4HI	GCNGC	7 cut(s)	348, 426, 544, 639, 909, 912, 915
FspBI	CTAG	3 cut(s)	203, 740, 1009
GluI	GCNGC	7 cut(s)	348, 426, 544, 639, 909, 912, 915
HaeIII	GGCC	3 cut(s)	207, 795, 951
Hin1II	CATG	6 cut(s)	55, 376, 422, 598, 664, 859
HincII	GTYRAC	1 cut(s)	658
HindII	GTYRAC	1 cut(s)	658
HinfI	GANTC	2 cut(s)	805, 881
Hpy166II	GTNNAC	2 cut(s)	658, 773
Hpy188I	TCNGA	3 cut(s)	212, 629, 694
Hpy188III	TCNNGA	3 cut(s)	335, 444, 606
Hpy8I	GTNNAC	2 cut(s)	658, 773
Hpy99I	CGWCG	1 cut(s)	962
HpyAV	CCTTC	2 cut(s)	86, 844
HpyCH4III	ACNGT	4 cut(s)	29, 268, 472, 574
HpyCH4V	TGCA	7 cut(s)	113, 317, 350, 482, 773, 908, 917
HpyF10VI	GCNNNNNNNGC	5 cut(s)	161, 377, 521, 770, 914
HpyF3I	CTNAG	5 cut(s)	310, 336, 693, 711, 953
Hsp92II	CATG	6 cut(s)	55, 376, 422, 598, 664, 859
Kzo9I	GATC	1 cut(s)	295
LmnI	GCTCC	2 cut(s)	422, 761
Lsp1109I	GCAGC	7 cut(s)	334, 412, 530, 625, 901, 920, 923
LweI	GCATC	6 cut(s)	164, 359, 533, 587, 692, 850
MaeI	CTAG	3 cut(s)	203, 740, 1009
MaeIII	GTNAC	3 cut(s)	262, 361, 551
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MboII	GAAGA	2 cut(s)	33, 138
MhlI	GDGCHC	1 cut(s)	775
MluCI	AATT	3 cut(s)	213, 491, 998
MluI	ACGCGT	1 cut(s)	190
MmeI	TCCRAC	2 cut(s)	110, 607
MroXI	GAANNNNTTC	1 cut(s)	439
MslI	CAYNNNNRTG	2 cut(s)	56, 665
MspA1I	CMGCKG	2 cut(s)	914, 974
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	5 cut(s)	161, 377, 521, 770, 914
NcoI	CCATGG	1 cut(s)	51
NdeII	GATC	1 cut(s)	295
NlaIII	CATG	6 cut(s)	55, 376, 422, 598, 664, 859
NlaIV	GGNNCC	3 cut(s)	200, 729, 763
NmuCI	GTSAC	3 cut(s)	262, 361, 551
PceI	AGGCCT	1 cut(s)	207
PcsI	WCGNNNNNNNCGW	1 cut(s)	954
PdmI	GAANNNNTTC	1 cut(s)	439
PfeI	GAWTC	2 cut(s)	805, 881
PkrI	GCNGC	7 cut(s)	349, 427, 545, 640, 910, 913, 916
PspN4I	GGNNCC	3 cut(s)	200, 729, 763
PspPI	GGNCC	3 cut(s)	279, 727, 794
PstNI	CAGNNNCTG	2 cut(s)	884, 914
PvuII	CAGCTG	1 cut(s)	914
RsaI	GTAC	2 cut(s)	738, 782
RsaNI	GTAC	2 cut(s)	737, 781
RseI	CAYNNNNRTG	2 cut(s)	56, 665
SatI	GCNGC	7 cut(s)	348, 426, 544, 639, 909, 912, 915
Sau3AI	GATC	1 cut(s)	295
Sau96I	GGNCC	3 cut(s)	279, 727, 794
ScaI	AGTACT	1 cut(s)	738
SduI	GDGCHC	1 cut(s)	775
SfaNI	GCATC	6 cut(s)	164, 359, 533, 587, 692, 850
SinI	GGWCC	2 cut(s)	279, 727
SmiMI	CAYNNNNRTG	2 cut(s)	56, 665
SmlI	CTYRAG	2 cut(s)	64, 150
SmoI	CTYRAG	2 cut(s)	64, 150
SpeI	ACTAGT	1 cut(s)	739
Sse9I	AATT	3 cut(s)	213, 491, 998
SseBI	AGGCCT	1 cut(s)	207
SsiI	CCGC	6 cut(s)	48, 91, 299, 501, 825, 974
SspMI	CTAG	3 cut(s)	203, 740, 1009
StuI	AGGCCT	1 cut(s)	207
StyI	CCWWGG	3 cut(s)	51, 202, 616
TaaI	ACNGT	4 cut(s)	29, 268, 472, 574
TasI	AATT	3 cut(s)	213, 491, 998
TatI	WGTACW	2 cut(s)	736, 780
TfiI	GAWTC	2 cut(s)	805, 881
TscAI	CASTG	2 cut(s)	63, 715
TseFI	GTSAC	3 cut(s)	262, 361, 551
TseI	GCWGC	7 cut(s)	347, 425, 543, 638, 908, 911, 914
Tsp45I	GTSAC	3 cut(s)	262, 361, 551
TspDTI	ATGAA	5 cut(s)	156, 582, 659, 803, 936
TspGWI	ACGGA	1 cut(s)	802
TspRI	CASTG	2 cut(s)	63, 715
VneI	GTGCAC	1 cut(s)	771
VpaK11BI	GGWCC	2 cut(s)	279, 727
XagI	CCTNNNNNAGG	1 cut(s)	620
XmaJI	CCTAGG	1 cut(s)	202
XmnI	GAANNNNTTC	1 cut(s)	439
XspI	CTAG	3 cut(s)	203, 740, 1009
ZrmI	AGTACT	1 cut(s)	738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.