Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005308.1

Orthogroup ID

OG0006500

Physical Location & Seq

Genomic Coordinates Reverse (-)

2279 .. 3580

Gene Structure 1302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005308.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ctgcaggctccagtttcgggctcaaagaaaccagcagaagatgggcaactaatatttcttactgcaggtgacaaatctttgtatgaaatagcagcaccgcttttggacatcatggggaagtcaagattttaccttggagaggttggatacggtgctgccatgaaacttgttgtcaacatgatcatgggaagtatgatggcatcattctcggaagggttggttctcactgagaaaataggactggacccaaaagtactagttgaggtggtctcacagggtgccattagcgcaccaatgtactcactcaaaggcccatcaatgattcaatctctctaccctaccgcgtttcccttgaagcatcaacaaaaggacatgaggcttgctctgggattagcagaatctgtttcccaatctacgccgattgcagcagctgcaaatgaactatacaaggtagcaaagtcacatggccttagcgacgaggacttttcagcagtcattgaagcattgaaaccgaagttgaagcactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016491 GO:0016614 GO:0016616 GO:0030267 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00630 ko00650 ko01100 ko01120 ko01200 map00630 map00650 map01100 map01120 map01200

Pfam Domains

Protein Families

NAD_binding_11 NAD_binding_2

Protein Analysis

175

Amino Acids

18.64

Weight (kDa)

7.03

Isoelectric Point (pI)

30.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17650 AT1G17650
fragaria_vesca	FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660
malus_domestica	MD09G1191900.v1.1
prunus_persica	Prupe.3G048100_v2.0.a1 Prupe.3G048100_v2.0.a1
pyrus_communis	pycom09g10840
rosa_chinensis	RchiOBHm_Chr2g0143571
rosa_laevigata	RLG00000020047
rosa_multiflora	Rmu_co8457181.1_g000001 Rmu_sc0005308.1_g000001 Rmu_ssc0000231.1_g000008 Rmu_ssc0000231.1_g000012
rosa_roxburghii	Rroxscaffold_2G00101650
rosa_rugosa	Rorug02G0383900
rosa_samantha	Rh2AG435800 Rh2BG443400 Rh2CG421900 Rh2DG453800
rosa_wichuraiana	Rw2G035510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	56
Acc36I	ACCTGC	1 cut(s)	56
AccB1I	GGYRCC	1 cut(s)	278
AccII	CGCG	1 cut(s)	344
AciI	CCGC	2 cut(s)	98, 342
AdeI	CACNNNGTG	1 cut(s)	278
AfaI	GTAC	2 cut(s)	255, 299
AfiI	CCNNNNNNNGG	2 cut(s)	17, 139
AgsI	TTSAA	5 cut(s)	326, 355, 500, 508, 520
AhlI	ACTAGT	1 cut(s)	256
AluBI	AGCT	1 cut(s)	431
AluI	AGCT	1 cut(s)	431
Alw26I	GTCTC	1 cut(s)	274
AlwNI	CAGNNNCTG	2 cut(s)	401, 431
AoxI	GGCC	2 cut(s)	310, 466
ApeKI	GCWGC	5 cut(s)	92, 155, 425, 428, 431
AspLEI	GCGC	1 cut(s)	290
AspS9I	GGNCC	2 cut(s)	244, 311
AsuHPI	GGTGA	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	244
BanI	GGYRCC	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	23
BbvI	GCAGC	5 cut(s)	104, 142, 418, 437, 440
BccI	CCATC	3 cut(s)	35, 190, 322
BcgI	CGANNNNNNTGC	2 cut(s)	189, 223
BciVI	GTATCC	1 cut(s)	140
BclI	TGATCA	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	274
BcuI	ACTAGT	1 cut(s)	256
BfaI	CTAG	2 cut(s)	257, 526
BfmI	CTRYAG	2 cut(s)	2, 63
BfuAI	ACCTGC	1 cut(s)	56
BfuI	GTATCC	1 cut(s)	140
BisI	GCNGC	5 cut(s)	93, 156, 426, 429, 432
BlsI	GCNGC	5 cut(s)	94, 157, 427, 430, 433
BmcAI	AGTACT	1 cut(s)	255
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	2 cut(s)	244, 311
BmiI	GGNNCC	3 cut(s)	9, 246, 280
BmsI	GCATC	2 cut(s)	209, 367
BplI	GAGNNNNNCTC	4 cut(s)	254, 286, 367, 399
Bpu10I	CCTNAGC	1 cut(s)	470
BsaI	GGTCTC	1 cut(s)	274
BsaJI	CCNNGG	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 139
Bse1I	ACTGG	2 cut(s)	11, 246
BseDI	CCNNGG	1 cut(s)	133
BseLI	CCNNNNNNNGG	2 cut(s)	17, 139
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	2 cut(s)	11, 246
BseXI	GCAGC	5 cut(s)	104, 142, 418, 437, 440
Bsh1236I	CGCG	1 cut(s)	344
BshFI	GGCC	2 cut(s)	312, 468
BshNI	GGYRCC	1 cut(s)	278
BslI	CCNNNNNNNGG	2 cut(s)	17, 139
BsmAI	GTCTC	1 cut(s)	274
BsnI	GGCC	2 cut(s)	312, 468
Bso31I	GGTCTC	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp143I	GATC	1 cut(s)	180
BspACI	CCGC	2 cut(s)	98, 342
BspANI	GGCC	2 cut(s)	312, 468
BspCNI	CTCAG	1 cut(s)	220
BspFNI	CGCG	1 cut(s)	344
BspLI	GGNNCC	3 cut(s)	9, 246, 280
BspMAI	CTGCAG	2 cut(s)	6, 67
BspMI	ACCTGC	1 cut(s)	56
BspT107I	GGYRCC	1 cut(s)	278
BspTNI	GGTCTC	1 cut(s)	274
BsrI	ACTGG	2 cut(s)	11, 246
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	133
Bst4CI	ACNGT	1 cut(s)	152
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstC8I	GCNNGC	2 cut(s)	6, 381
BstDEI	CTNAG	2 cut(s)	228, 470
BstENI	CCTNNNNNAGG	1 cut(s)	137
BstFNI	CGCG	1 cut(s)	344
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	1 cut(s)	183
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	2 cut(s)	287, 431
BstSFI	CTRYAG	2 cut(s)	2, 63
BstUI	CGCG	1 cut(s)	344
BstV1I	GCAGC	5 cut(s)	104, 142, 418, 437, 440
BsuI	GTATCC	1 cut(s)	140
BsuRI	GGCC	2 cut(s)	312, 468
BtsIMutI	CAGTG	1 cut(s)	225
BveI	ACCTGC	1 cut(s)	56
Cac8I	GCNNGC	2 cut(s)	6, 381
CaiI	CAGNNNCTG	2 cut(s)	401, 431
CfoI	GCGC	1 cut(s)	290
Cfr13I	GGNCC	2 cut(s)	244, 311
Csp6I	GTAC	2 cut(s)	254, 298
CviAII	CATG	6 cut(s)	112, 160, 178, 184, 373, 464
CviJI	RGCY	6 cut(s)	8, 21, 312, 379, 431, 468
CviKI_1	RGCY	6 cut(s)	8, 21, 312, 379, 431, 468
CviQI	GTAC	2 cut(s)	254, 298
DdeI	CTNAG	2 cut(s)	228, 470
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
DraIII	CACNNNGTG	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	23
Eco31I	GGTCTC	1 cut(s)	274
Eco47I	GGWCC	1 cut(s)	244
EcoNI	CCTNNNNNAGG	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	133
EcoT38I	GRGCYC	1 cut(s)	23
ErhI	CCWWGG	1 cut(s)	133
FaeI	CATG	6 cut(s)	115, 163, 181, 187, 376, 467
FaiI	YATR	9 cut(s)	84, 113, 161, 179, 185, 194, 374, 445, 465
FatI	CATG	6 cut(s)	111, 159, 177, 183, 372, 463
FbaI	TGATCA	1 cut(s)	180
Fnu4HI	GCNGC	5 cut(s)	93, 156, 426, 429, 432
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	5 cut(s)	93, 156, 426, 429, 432
FspBI	CTAG	2 cut(s)	257, 526
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	5 cut(s)	93, 156, 426, 429, 432
HaeIII	GGCC	2 cut(s)	312, 468
HhaI	GCGC	1 cut(s)	290
Hin1II	CATG	6 cut(s)	115, 163, 181, 187, 376, 467
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	2 cut(s)	322, 398
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	1 cut(s)	123
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	1 cut(s)	479
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4V	TGCA	4 cut(s)	4, 65, 425, 434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	287, 431
HpyF3I	CTNAG	2 cut(s)	228, 470
Hsp92II	CATG	6 cut(s)	115, 163, 181, 187, 376, 467
HspAI	GCGC	1 cut(s)	288
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	6 cut(s)	24, 45, 51, 227, 260, 371
Lsp1109I	GCAGC	5 cut(s)	104, 142, 418, 437, 440
LweI	GCATC	2 cut(s)	209, 367
MaeI	CTAG	2 cut(s)	257, 526
MaeIII	GTNAC	2 cut(s)	68, 459
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	1 cut(s)	50
MhlI	GDGCHC	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	124
MnlI	CCTC	4 cut(s)	133, 256, 369, 472
MslI	CAYNNNNRTG	1 cut(s)	182
MspA1I	CMGCKG	1 cut(s)	431
MvnI	CGCG	1 cut(s)	344
MwoI	GCNNNNNNNGC	2 cut(s)	287, 431
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	6 cut(s)	115, 163, 181, 187, 376, 467
NlaIV	GGNNCC	3 cut(s)	9, 246, 280
NmuCI	GTSAC	2 cut(s)	68, 459
PaqCI	CACCTGC	1 cut(s)	56
PfeI	GAWTC	2 cut(s)	322, 398
PkrI	GCNGC	5 cut(s)	94, 157, 427, 430, 433
PspN4I	GGNNCC	3 cut(s)	9, 246, 280
PspPI	GGNCC	2 cut(s)	244, 311
PstI	CTGCAG	2 cut(s)	6, 67
PstNI	CAGNNNCTG	2 cut(s)	401, 431
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	2 cut(s)	255, 299
RsaNI	GTAC	2 cut(s)	254, 298
RseI	CAYNNNNRTG	1 cut(s)	182
SatI	GCNGC	5 cut(s)	93, 156, 426, 429, 432
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	2 cut(s)	244, 311
ScaI	AGTACT	1 cut(s)	255
SduI	GDGCHC	1 cut(s)	23
SetI	ASST	6 cut(s)	70, 135, 144, 267, 433, 453
SfaNI	GCATC	2 cut(s)	209, 367
SfcI	CTRYAG	2 cut(s)	2, 63
SinI	GGWCC	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	182
SpeI	ACTAGT	1 cut(s)	256
SsiI	CCGC	2 cut(s)	98, 342
SspI	AATATT	1 cut(s)	54
SspMI	CTAG	2 cut(s)	257, 526
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	1 cut(s)	152
TatI	WGTACW	2 cut(s)	253, 297
TfiI	GAWTC	2 cut(s)	322, 398
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	2 cut(s)	68, 459
TseI	GCWGC	5 cut(s)	92, 155, 425, 428, 431
Tsp45I	GTSAC	2 cut(s)	68, 459
TspDTI	ATGAA	3 cut(s)	99, 176, 453
TspRI	CASTG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	244
XagI	CCTNNNNNAGG	1 cut(s)	137
XspI	CTAG	2 cut(s)	257, 526
ZrmI	AGTACT	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.