Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006500

Physical Location & Seq

Genomic Coordinates Reverse (-)

61243673 .. 61247365

Gene Structure 3693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51366

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGAGCATGTCCTTCTTGGTCAAGCCTAGTAACTGTCACCACTTATCTTTAACTGCCATGGCAATGTCCTCGAGCTTCTGCCCTCATATTCCTAACCACTTGAGAAGTAGACCCATTTGCTCATTCCCTACAAAACCTCTTTCTCTCTCTCTCAAGGCCTTCTCTTCCCAACCATCCAATGCTTCATTCACAGATGAATTGCCAGCACGTGTGGGTTTCCTTGGTCTTGGAATTATGGGTTCTCCAATGGCACAGAACCTTATAAAATCTGGGTGTGACGTGACTGTTTGGAATAGGACGAAGAGCAAATGTGATCCACTCATCAGCTTAGGTGCAAAATATAAACCCTCTCCTGCAGAAGTAGCTGCATCTTGTGATGTCACATTTGCTATGCTTGCCGATCCTGAAAGTGCTGTTGATGTTGCCCTTGGGGAGCATGGAGCTGTTAGTGGAATGAGTACAGGAAAAGGGTATGTGGATGTTTCAACTGTTGATGTTGAAACTTCTAAACTGATTAATGGTCATATCAAAGCTACTGGGGCATTATTTTTGGAGGCTCCAGTTTCGGGCTCAAAGAAACCAGCAGAAGATGGGCAACTAATATTTCTTACTGCAGGCATGCAATCTTGTTCTTTCCTTTACGTTCATATACTTTTGGGTGACAAATCTTTGTATGAAATAGCAGCACCGCTTTTGGACATCATGGGGAAGTCAAGATTTTACCTTGGAGAGGTTGGATACGGTGCTGCCATGAAACTTGTTGTCAACATGATCATGGGAAGTATGATGGCATCATTCTCGGAAGGGTTGGTTCTCACTGAGAAAATAGGACTGGACCCCAAAGTACTAGTTGAGGTGGTCTCACAGGGTGCCATTAGCGCACCAATGTACTCACTCAAAGGCCCATCAATGATTCAATCTCTCTACCCTACCGCGTTTCCCTTGAAGCATCAACAAAAGGACATGAGGCTTGCTCTGGGATTAGCAGAATCTGTTTCCCAATCTACGCCGATTGCAGCAGCTGCAAATGAACTATACAAGGTAGCAAAGTCACATGGCCTTAGCGACGAGGACTTTTCAGCAGTCATTGAAGCATTGAAACCGAAGTTGAAGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016491 GO:0016614 GO:0016616 GO:0030267 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00630 ko00650 ko01100 ko01120 ko01200 map00630 map00650 map01100 map01120 map01200

Pfam Domains

Protein Families

NAD_binding_11 NAD_binding_2

Protein Analysis

372

Amino Acids

39.45

Weight (kDa)

7.62

Isoelectric Point (pI)

39.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	70 - 209	7.6e-39	NAD binding domain of 6-phosphogluconate dehydrogenase
NAD_binding_11	PF14833	246 - 365	3.6e-27	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17650 AT1G17650
fragaria_vesca	FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660
malus_domestica	MD09G1191900.v1.1
prunus_persica	Prupe.3G048100_v2.0.a1 Prupe.3G048100_v2.0.a1
pyrus_communis	pycom09g10840
rosa_chinensis	RchiOBHm_Chr2g0143571
rosa_laevigata	RLG00000020047
rosa_multiflora	Rmu_co8457181.1_g000001 Rmu_sc0005308.1_g000001 Rmu_ssc0000231.1_g000008 Rmu_ssc0000231.1_g000012
rosa_roxburghii	Rroxscaffold_2G00101650
rosa_rugosa	Rorug02G0383900
rosa_samantha	Rh2AG435800 Rh2BG443400 Rh2CG421900 Rh2DG453800
rosa_wichuraiana	Rw2G035510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	263
AccB1I	GGYRCC	1 cut(s)	869
AccI	GTMKAC	1 cut(s)	109
AccII	CGCG	1 cut(s)	935
AciI	CCGC	2 cut(s)	689, 933
AclWI	GGATC	2 cut(s)	308, 395
AcvI	CACGTG	1 cut(s)	209
AdeI	CACNNNGTG	1 cut(s)	869
AfaI	GTAC	3 cut(s)	460, 846, 890
AfiI	CCNNNNNNNGG	2 cut(s)	566, 730
AflIII	ACRYGT	1 cut(s)	208
AgsI	TTSAA	7 cut(s)	486, 500, 917, 946, 1091, 1099, 1111
AhlI	ACTAGT	1 cut(s)	847
AjiI	CACGTC	1 cut(s)	280
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AluBI	AGCT	6 cut(s)	75, 327, 365, 443, 533, 1022
AluI	AGCT	6 cut(s)	75, 327, 365, 443, 533, 1022
Alw26I	GTCTC	1 cut(s)	865
AlwI	GGATC	2 cut(s)	308, 395
AlwNI	CAGNNNCTG	2 cut(s)	992, 1022
Ama87I	CYCGRG	1 cut(s)	70
AoxI	GGCC	3 cut(s)	156, 901, 1057
ApeKI	GCWGC	6 cut(s)	365, 683, 746, 1016, 1019, 1022
AseI	ATTAAT	1 cut(s)	516
AspLEI	GCGC	1 cut(s)	881
AspS9I	GGNCC	2 cut(s)	835, 902
AsuHPI	GGTGA	2 cut(s)	29, 671
AvaI	CYCGRG	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	835
BanI	GGYRCC	1 cut(s)	869
BanII	GRGCYC	1 cut(s)	572
BbrPI	CACGTG	1 cut(s)	209
BbvI	GCAGC	6 cut(s)	352, 695, 733, 1009, 1028, 1031
BccI	CCATC	4 cut(s)	181, 584, 781, 913
BcgI	CGANNNNNNTGC	4 cut(s)	51, 85, 780, 814
BciVI	GTATCC	1 cut(s)	731
BclI	TGATCA	1 cut(s)	771
BcoDI	GTCTC	1 cut(s)	865
BcuI	ACTAGT	1 cut(s)	847
BfaI	CTAG	3 cut(s)	27, 848, 1117
BfmI	CTRYAG	2 cut(s)	354, 612
BfuI	GTATCC	1 cut(s)	731
BisI	GCNGC	6 cut(s)	366, 684, 747, 1017, 1020, 1023
BlsI	GCNGC	6 cut(s)	367, 685, 748, 1018, 1021, 1024
BmcAI	AGTACT	1 cut(s)	846
Bme18I	GGWCC	1 cut(s)	835
BmeT110I	CYCGRG	1 cut(s)	70
BmgBI	CACGTC	1 cut(s)	280
BmgT120I	GGNCC	2 cut(s)	835, 902
BmiI	GGNNCC	3 cut(s)	558, 837, 871
BmrI	ACTGGG	1 cut(s)	546
BmsI	GCATC	3 cut(s)	377, 800, 958
BmuI	ACTGGG	1 cut(s)	546
BplI	GAGNNNNNCTC	4 cut(s)	845, 877, 958, 990
BpmI	CTGGAG	1 cut(s)	543
Bpu10I	CCTNAGC	2 cut(s)	328, 1061
BpuEI	CTTGAG	2 cut(s)	121, 137
BsaAI	YACGTR	1 cut(s)	209
BsaI	GGTCTC	1 cut(s)	865
BsaJI	CCNNGG	4 cut(s)	57, 220, 427, 724
Bsc4I	CCNNNNNNNGG	2 cut(s)	566, 730
Bse1I	ACTGG	3 cut(s)	541, 560, 837
Bse3DI	GCAATG	1 cut(s)	69
BseDI	CCNNGG	4 cut(s)	57, 220, 427, 724
BseGI	GGATG	2 cut(s)	173, 484
BseLI	CCNNNNNNNGG	2 cut(s)	566, 730
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	1 cut(s)	810
BseNI	ACTGG	3 cut(s)	541, 560, 837
BseXI	GCAGC	6 cut(s)	352, 695, 733, 1009, 1028, 1031
Bsh1236I	CGCG	1 cut(s)	935
BshFI	GGCC	3 cut(s)	158, 903, 1059
BshNI	GGYRCC	1 cut(s)	869
BsiHKCI	CYCGRG	1 cut(s)	70
BslI	CCNNNNNNNGG	2 cut(s)	566, 730
BsmAI	GTCTC	1 cut(s)	865
BsnI	GGCC	3 cut(s)	158, 903, 1059
Bso31I	GGTCTC	1 cut(s)	865
BsoBI	CYCGRG	1 cut(s)	70
Bsp1286I	GDGCHC	1 cut(s)	572
Bsp143I	GATC	3 cut(s)	313, 400, 771
Bsp19I	CCATGG	1 cut(s)	57
BspACI	CCGC	2 cut(s)	689, 933
BspANI	GGCC	3 cut(s)	158, 903, 1059
BspCNI	CTCAG	1 cut(s)	811
BspFNI	CGCG	1 cut(s)	935
BspLI	GGNNCC	3 cut(s)	558, 837, 871
BspMAI	CTGCAG	2 cut(s)	358, 616
BspPI	GGATC	2 cut(s)	308, 395
BspQI	GCTCTTC	1 cut(s)	296
BspT107I	GGYRCC	1 cut(s)	869
BspTNI	GGTCTC	1 cut(s)	865
BsrDI	GCAATG	1 cut(s)	69
BsrI	ACTGG	3 cut(s)	541, 560, 837
BssECI	CCNNGG	4 cut(s)	57, 220, 427, 724
BssMI	GATC	3 cut(s)	313, 400, 771
BssT1I	CCWWGG	4 cut(s)	57, 220, 427, 724
Bst4CI	ACNGT	4 cut(s)	35, 286, 490, 743
Bst6I	CTCTTC	2 cut(s)	169, 296
BstAPI	GCANNNNNTGC	1 cut(s)	1022
BstBAI	YACGTR	1 cut(s)	209
BstC8I	GCNNGC	5 cut(s)	204, 396, 616, 620, 972
BstDEI	CTNAG	3 cut(s)	328, 819, 1061
BstDSI	CCRYGG	1 cut(s)	57
BstENI	CCTNNNNNAGG	1 cut(s)	728
BstF5I	GGATG	2 cut(s)	173, 484
BstFNI	CGCG	1 cut(s)	935
BstHHI	GCGC	1 cut(s)	881
BstKTI	GATC	3 cut(s)	316, 403, 774
BstMAI	GTCTC	1 cut(s)	865
BstMBI	GATC	3 cut(s)	313, 400, 771
BstMWI	GCNNNNNNNGC	5 cut(s)	362, 395, 539, 878, 1022
BstNSI	RCATGY	2 cut(s)	10, 622
BstSFI	CTRYAG	2 cut(s)	354, 612
BstUI	CGCG	1 cut(s)	935
BstV1I	GCAGC	6 cut(s)	352, 695, 733, 1009, 1028, 1031
BsuI	GTATCC	1 cut(s)	731
BsuRI	GGCC	3 cut(s)	158, 903, 1059
BtgI	CCRYGG	1 cut(s)	57
BtrI	CACGTC	1 cut(s)	280
BtsCI	GGATG	2 cut(s)	173, 484
BtsIMutI	CAGTG	1 cut(s)	816
Cac8I	GCNNGC	5 cut(s)	204, 396, 616, 620, 972
CaiI	CAGNNNCTG	2 cut(s)	992, 1022
CfoI	GCGC	1 cut(s)	881
Cfr13I	GGNCC	2 cut(s)	835, 902
Csp6I	GTAC	3 cut(s)	459, 845, 889
CviQI	GTAC	3 cut(s)	459, 845, 889
DdeI	CTNAG	3 cut(s)	328, 819, 1061
DpnI	GATC	3 cut(s)	315, 402, 773
DpnII	GATC	3 cut(s)	313, 400, 771
DraIII	CACNNNGTG	1 cut(s)	869
Eam1104I	CTCTTC	2 cut(s)	169, 296
EarI	CTCTTC	2 cut(s)	169, 296
Eco130I	CCWWGG	4 cut(s)	57, 220, 427, 724
Eco147I	AGGCCT	1 cut(s)	158
Eco24I	GRGCYC	1 cut(s)	572
Eco31I	GGTCTC	1 cut(s)	865
Eco47I	GGWCC	1 cut(s)	835
Eco72I	CACGTG	1 cut(s)	209
Eco88I	CYCGRG	1 cut(s)	70
EcoNI	CCTNNNNNAGG	1 cut(s)	728
EcoT14I	CCWWGG	4 cut(s)	57, 220, 427, 724
EcoT38I	GRGCYC	1 cut(s)	572
ErhI	CCWWGG	4 cut(s)	57, 220, 427, 724
FbaI	TGATCA	1 cut(s)	771
FblI	GTMKAC	1 cut(s)	109
Fnu4HI	GCNGC	6 cut(s)	366, 684, 747, 1017, 1020, 1023
FokI	GGATG	2 cut(s)	160, 491
FriOI	GRGCYC	1 cut(s)	572
Fsp4HI	GCNGC	6 cut(s)	366, 684, 747, 1017, 1020, 1023
FspBI	CTAG	3 cut(s)	27, 848, 1117
GlaI	GCGC	1 cut(s)	880
GluI	GCNGC	6 cut(s)	366, 684, 747, 1017, 1020, 1023
GsuI	CTGGAG	1 cut(s)	543
HaeIII	GGCC	3 cut(s)	158, 903, 1059
HhaI	GCGC	1 cut(s)	881
Hin6I	GCGC	1 cut(s)	879
HinP1I	GCGC	1 cut(s)	879
HincII	GTYRAC	1 cut(s)	766
HindII	GTYRAC	1 cut(s)	766
HinfI	GANTC	2 cut(s)	913, 989
HphI	GGTGA	2 cut(s)	29, 671
Hpy166II	GTNNAC	2 cut(s)	110, 766
Hpy188I	TCNGA	1 cut(s)	802
Hpy188III	TCNNGA	2 cut(s)	404, 714
Hpy8I	GTNNAC	2 cut(s)	110, 766
Hpy99I	CGWCG	1 cut(s)	1070
HpyAV	CCTTC	3 cut(s)	22, 169, 797
HpyCH4III	ACNGT	4 cut(s)	35, 286, 490, 743
HpyCH4IV	ACGT	3 cut(s)	208, 279, 642
HpyCH4V	TGCA	7 cut(s)	335, 356, 368, 614, 622, 1016, 1025
HpyF10VI	GCNNNNNNNGC	5 cut(s)	362, 395, 539, 878, 1022
HpyF3I	CTNAG	3 cut(s)	328, 819, 1061
HpySE526I	ACGT	3 cut(s)	208, 279, 642
HspAI	GCGC	1 cut(s)	879
Ksp22I	TGATCA	1 cut(s)	771
Kzo9I	GATC	3 cut(s)	313, 400, 771
LguI	GCTCTTC	1 cut(s)	296
LmnI	GCTCC	3 cut(s)	433, 440, 562
Lsp1109I	GCAGC	6 cut(s)	352, 695, 733, 1009, 1028, 1031
LweI	GCATC	3 cut(s)	377, 800, 958
MaeI	CTAG	3 cut(s)	27, 848, 1117
MaeII	ACGT	3 cut(s)	208, 279, 642
MaeIII	GTNAC	7 cut(s)	29, 35, 275, 280, 379, 659, 1050
MalI	GATC	3 cut(s)	315, 402, 773
MboI	GATC	3 cut(s)	313, 400, 771
MboII	GAAGA	3 cut(s)	156, 313, 599
MhlI	GDGCHC	1 cut(s)	572
MluCI	AATT	2 cut(s)	197, 231
MmeI	TCCRAC	1 cut(s)	715
MnlI	CCTC	9 cut(s)	79, 93, 147, 358, 547, 724, 847, 960, 1063
MseI	TTAA	2 cut(s)	50, 516
MslI	CAYNNNNRTG	2 cut(s)	62, 773
MspA1I	CMGCKG	1 cut(s)	1022
MvnI	CGCG	1 cut(s)	935
MwoI	GCNNNNNNNGC	5 cut(s)	362, 395, 539, 878, 1022
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	3 cut(s)	313, 400, 771
NlaIV	GGNNCC	3 cut(s)	558, 837, 871
NmuCI	GTSAC	6 cut(s)	35, 275, 280, 379, 659, 1050
NspI	RCATGY	2 cut(s)	10, 622
PaeI	GCATGC	1 cut(s)	622
PaeR7I	CTCGAG	1 cut(s)	70
PceI	AGGCCT	1 cut(s)	158
PciSI	GCTCTTC	1 cut(s)	296
PfeI	GAWTC	2 cut(s)	913, 989
PkrI	GCNGC	6 cut(s)	367, 685, 748, 1018, 1021, 1024
PmaCI	CACGTG	1 cut(s)	209
PmlI	CACGTG	1 cut(s)	209
Ppu21I	YACGTR	1 cut(s)	209
PshBI	ATTAAT	1 cut(s)	516
PsiI	TTATAA	1 cut(s)	263
PspCI	CACGTG	1 cut(s)	209
PspN4I	GGNNCC	3 cut(s)	558, 837, 871
PspPI	GGNCC	2 cut(s)	835, 902
PspXI	VCTCGAGB	1 cut(s)	70
PstI	CTGCAG	2 cut(s)	358, 616
PstNI	CAGNNNCTG	2 cut(s)	992, 1022
PvuII	CAGCTG	1 cut(s)	1022
RsaI	GTAC	3 cut(s)	460, 846, 890
RsaNI	GTAC	3 cut(s)	459, 845, 889
RseI	CAYNNNNRTG	2 cut(s)	62, 773
SapI	GCTCTTC	1 cut(s)	296
SaqAI	TTAA	2 cut(s)	50, 516
SatI	GCNGC	6 cut(s)	366, 684, 747, 1017, 1020, 1023
Sau3AI	GATC	3 cut(s)	313, 400, 771
Sau96I	GGNCC	2 cut(s)	835, 902
ScaI	AGTACT	1 cut(s)	846
SduI	GDGCHC	1 cut(s)	572
SfaNI	GCATC	3 cut(s)	377, 800, 958
SfcI	CTRYAG	2 cut(s)	354, 612
Sfr274I	CTCGAG	1 cut(s)	70
SinI	GGWCC	1 cut(s)	835
SlaI	CTCGAG	1 cut(s)	70
SmiMI	CAYNNNNRTG	2 cut(s)	62, 773
SmlI	CTYRAG	3 cut(s)	70, 100, 152
SmoI	CTYRAG	3 cut(s)	70, 100, 152
SpeI	ACTAGT	1 cut(s)	847
SphI	GCATGC	1 cut(s)	622
Sse9I	AATT	2 cut(s)	197, 231
SseBI	AGGCCT	1 cut(s)	158
SsiI	CCGC	2 cut(s)	689, 933
SspI	AATATT	1 cut(s)	603
SspMI	CTAG	3 cut(s)	27, 848, 1117
StuI	AGGCCT	1 cut(s)	158
StyI	CCWWGG	4 cut(s)	57, 220, 427, 724
TaaI	ACNGT	4 cut(s)	35, 286, 490, 743
TaiI	ACGT	3 cut(s)	211, 282, 645
TaqI	TCGA	1 cut(s)	71
TasI	AATT	2 cut(s)	197, 231
TatI	WGTACW	3 cut(s)	458, 844, 888
TfiI	GAWTC	2 cut(s)	913, 989
Tru1I	TTAA	2 cut(s)	50, 516
Tru9I	TTAA	2 cut(s)	50, 516
TscAI	CASTG	1 cut(s)	823
TseFI	GTSAC	6 cut(s)	35, 275, 280, 379, 659, 1050
TseI	GCWGC	6 cut(s)	365, 683, 746, 1016, 1019, 1022
Tsp45I	GTSAC	6 cut(s)	35, 275, 280, 379, 659, 1050
TspDTI	ATGAA	6 cut(s)	174, 210, 635, 690, 767, 1044
TspRI	CASTG	1 cut(s)	823
VpaK11BI	GGWCC	1 cut(s)	835
VspI	ATTAAT	1 cut(s)	516
XagI	CCTNNNNNAGG	1 cut(s)	728
XceI	RCATGY	2 cut(s)	10, 622
XhoI	CTCGAG	1 cut(s)	70
XmiI	GTMKAC	1 cut(s)	109
XspI	CTAG	3 cut(s)	27, 848, 1117
ZrmI	AGTACT	1 cut(s)	846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.