Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006500

Physical Location & Seq

Genomic Coordinates Reverse (-)

60559299 .. 60562402

Gene Structure 3104 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020047

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCAATGTCCTCAAGCTTTTGCCCTCATATCCCAAACCACTTAAGAGGTAGACCCATTTGCTCATTCCCCACAAAACCTCTCTCTCTTTCTCTCAAGGCTTTTTCTTCTCAACCATCCAATGCTTCATCCACAGATGAATTGCCAGCACGTGTGGGTTTCCTTGGTCTTGGAATTATGGGTTCTCCGATGGCACAGAACCTTATAAAATCGGGGTGTGATGTGACTGTTTGGAATAGGACGAAGAGCAAATGTGATCCACTCATCAGCTTAGGTGCAAAATATAAACCCTCTCCTGCAGAAGTAGCTGCATCTTGTGATGTCACATTTGCTATGCTCGCCGACCCTGAAAGTGCTGTTGACGTTGCCCTTGGGAAGCATGGAGCTGCTAGTGGAATGAGTTCAGGAAAAGGGTATGTGGATGTTTCAACTGTTGATGGTGAAACTTCTAAACTGATTGGTGGTCATATCAAAGCTACTGGGGCATTATTTTTGGAGGCTCCAGTTTCAGGCTCAAAAAAACCAGCAGAAGATGGGCAACTAATATTTCTTACCGCAGGTGACAAATCTTTGTATGAAATAGCAGCACCGCTTTTGGACATCATGGGGAAGTCAAGATTTTACCTTGGAGAGGTTGGAAACGGTGCTGCCATGAAACTTGTTGTCAACATGATCATGGGAAGTATGATGGCATCATTTTCAGAAGGGTTGGTTCTCACTGAGAAAATAGGACTGGACCCACAAGTACTAGTTGAGGTGGTCTCACAGGGTGCCATTAGCGCACCAATGTACTCACTCAAAGGCCCGTCAATGATTCAATCTCTCTACCCTACCGCATTTCCCTTGAAGCATCAACAAAAGGACATGAGGCTTGCTCTGGGATTAGCAGAATCTGTTTCCCAATCTACGCCGATTGCAGCAGCTGCAAATGAACTATACAAGGTAGCAAAGTCACATGGCCTTAGCGACGAGGACTTTTCAGCAGTCATTGAAGCATTGAAACCGAAGTTGAAGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016491 GO:0016614 GO:0016616 GO:0030267 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00630 ko00650 ko01100 ko01120 ko01200 map00630 map00650 map01100 map01120 map01200

Pfam Domains

Protein Families

NAD_binding_11 NAD_binding_2

Protein Analysis

340

Amino Acids

35.49

Weight (kDa)

7.64

Isoelectric Point (pI)

35.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	51 - 210	4.3e-43	NAD binding domain of 6-phosphogluconate dehydrogenase
NAD_binding_11	PF14833	213 - 332	7.9e-28	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17650 AT1G17650
fragaria_vesca	FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660
malus_domestica	MD09G1191900.v1.1
prunus_persica	Prupe.3G048100_v2.0.a1 Prupe.3G048100_v2.0.a1
pyrus_communis	pycom09g10840
rosa_chinensis	RchiOBHm_Chr2g0143571
rosa_laevigata	RLG00000020047
rosa_multiflora	Rmu_co8457181.1_g000001 Rmu_sc0005308.1_g000001 Rmu_ssc0000231.1_g000008 Rmu_ssc0000231.1_g000012
rosa_roxburghii	Rroxscaffold_2G00101650
rosa_rugosa	Rorug02G0383900
rosa_samantha	Rh2AG435800 Rh2BG443400 Rh2CG421900 Rh2DG453800
rosa_wichuraiana	Rw2G035510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	206
AarI	CACCTGC	1 cut(s)	548
Acc36I	ACCTGC	1 cut(s)	548
AccB1I	GGYRCC	1 cut(s)	770
AccI	GTMKAC	1 cut(s)	52
AciI	CCGC	3 cut(s)	555, 590, 834
AclWI	GGATC	1 cut(s)	251
AcvI	CACGTG	1 cut(s)	152
AdeI	CACNNNGTG	1 cut(s)	770
AfaI	GTAC	2 cut(s)	747, 791
AfiI	CCNNNNNNNGG	2 cut(s)	509, 631
AflII	CTTAAG	1 cut(s)	43
AflIII	ACRYGT	1 cut(s)	151
AgsI	TTSAA	6 cut(s)	429, 818, 847, 992, 1000, 1012
AhlI	ACTAGT	1 cut(s)	748
AluBI	AGCT	6 cut(s)	18, 270, 308, 386, 476, 923
AluI	AGCT	6 cut(s)	18, 270, 308, 386, 476, 923
Alw26I	GTCTC	1 cut(s)	766
AlwI	GGATC	1 cut(s)	251
AlwNI	CAGNNNCTG	2 cut(s)	893, 923
AoxI	GGCC	2 cut(s)	802, 958
ApeKI	GCWGC	7 cut(s)	308, 386, 584, 647, 917, 920, 923
Asp700I	GAANNNNTTC	1 cut(s)	400
AspLEI	GCGC	1 cut(s)	782
AspS9I	GGNCC	2 cut(s)	736, 803
AsuHPI	GGTGA	2 cut(s)	452, 572
AvaII	GGWCC	1 cut(s)	736
BanI	GGYRCC	1 cut(s)	770
BbrPI	CACGTG	1 cut(s)	152
BbvI	GCAGC	7 cut(s)	295, 373, 596, 634, 910, 929, 932
BccI	CCATC	5 cut(s)	124, 184, 431, 527, 682
BclI	TGATCA	1 cut(s)	672
BcoDI	GTCTC	1 cut(s)	766
BcuI	ACTAGT	1 cut(s)	748
BfaI	CTAG	3 cut(s)	390, 749, 1018
BfmI	CTRYAG	1 cut(s)	297
BfrI	CTTAAG	1 cut(s)	43
BfuAI	ACCTGC	1 cut(s)	548
BisI	GCNGC	7 cut(s)	309, 387, 585, 648, 918, 921, 924
BlsI	GCNGC	7 cut(s)	310, 388, 586, 649, 919, 922, 925
BmcAI	AGTACT	1 cut(s)	747
Bme18I	GGWCC	1 cut(s)	736
BmgT120I	GGNCC	2 cut(s)	736, 803
BmiI	GGNNCC	3 cut(s)	501, 738, 772
BmrI	ACTGGG	1 cut(s)	489
BmsI	GCATC	3 cut(s)	320, 701, 859
BmuI	ACTGGG	1 cut(s)	489
BplI	GAGNNNNNCTC	4 cut(s)	746, 778, 859, 891
BpmI	CTGGAG	1 cut(s)	486
Bpu10I	CCTNAGC	2 cut(s)	271, 962
BpuEI	CTTGAG	1 cut(s)	80
BsaAI	YACGTR	1 cut(s)	152
BsaI	GGTCTC	1 cut(s)	766
BsaJI	CCNNGG	3 cut(s)	163, 370, 625
Bsc4I	CCNNNNNNNGG	2 cut(s)	509, 631
Bse1I	ACTGG	3 cut(s)	484, 503, 738
Bse3DI	GCAATG	1 cut(s)	12
BseDI	CCNNGG	3 cut(s)	163, 370, 625
BseGI	GGATG	3 cut(s)	116, 128, 427
BseLI	CCNNNNNNNGG	2 cut(s)	509, 631
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	711
BseNI	ACTGG	3 cut(s)	484, 503, 738
BseXI	GCAGC	7 cut(s)	295, 373, 596, 634, 910, 929, 932
BshFI	GGCC	2 cut(s)	804, 960
BshNI	GGYRCC	1 cut(s)	770
BslI	CCNNNNNNNGG	2 cut(s)	509, 631
BsmAI	GTCTC	1 cut(s)	766
BsnI	GGCC	2 cut(s)	804, 960
Bso31I	GGTCTC	1 cut(s)	766
Bsp143I	GATC	2 cut(s)	256, 672
BspACI	CCGC	3 cut(s)	555, 590, 834
BspANI	GGCC	2 cut(s)	804, 960
BspCNI	CTCAG	1 cut(s)	712
BspLI	GGNNCC	3 cut(s)	501, 738, 772
BspMAI	CTGCAG	1 cut(s)	301
BspMI	ACCTGC	1 cut(s)	548
BspPI	GGATC	1 cut(s)	251
BspQI	GCTCTTC	1 cut(s)	239
BspT107I	GGYRCC	1 cut(s)	770
BspTI	CTTAAG	1 cut(s)	43
BspTNI	GGTCTC	1 cut(s)	766
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	3 cut(s)	484, 503, 738
BssECI	CCNNGG	3 cut(s)	163, 370, 625
BssMI	GATC	2 cut(s)	256, 672
BssT1I	CCWWGG	3 cut(s)	163, 370, 625
Bst4CI	ACNGT	3 cut(s)	229, 433, 644
Bst6I	CTCTTC	1 cut(s)	239
BstAFI	CTTAAG	1 cut(s)	43
BstAPI	GCANNNNNTGC	1 cut(s)	923
BstBAI	YACGTR	1 cut(s)	152
BstC8I	GCNNGC	3 cut(s)	147, 339, 873
BstDEI	CTNAG	3 cut(s)	271, 720, 962
BstENI	CCTNNNNNAGG	1 cut(s)	629
BstF5I	GGATG	3 cut(s)	116, 128, 427
BstHHI	GCGC	1 cut(s)	782
BstKTI	GATC	2 cut(s)	259, 675
BstMAI	GTCTC	1 cut(s)	766
BstMBI	GATC	2 cut(s)	256, 672
BstMWI	GCNNNNNNNGC	5 cut(s)	305, 338, 482, 779, 923
BstSFI	CTRYAG	1 cut(s)	297
BstV1I	GCAGC	7 cut(s)	295, 373, 596, 634, 910, 929, 932
BsuRI	GGCC	2 cut(s)	804, 960
BtsCI	GGATG	3 cut(s)	116, 128, 427
BtsIMutI	CAGTG	1 cut(s)	717
BveI	ACCTGC	1 cut(s)	548
Cac8I	GCNNGC	3 cut(s)	147, 339, 873
CaiI	CAGNNNCTG	2 cut(s)	893, 923
CfoI	GCGC	1 cut(s)	782
Cfr13I	GGNCC	2 cut(s)	736, 803
Csp6I	GTAC	2 cut(s)	746, 790
CviAII	CATG	7 cut(s)	380, 604, 652, 670, 676, 865, 956
CviQI	GTAC	2 cut(s)	746, 790
DdeI	CTNAG	3 cut(s)	271, 720, 962
DpnI	GATC	2 cut(s)	258, 674
DpnII	GATC	2 cut(s)	256, 672
DraIII	CACNNNGTG	1 cut(s)	770
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Eco130I	CCWWGG	3 cut(s)	163, 370, 625
Eco31I	GGTCTC	1 cut(s)	766
Eco47I	GGWCC	1 cut(s)	736
Eco72I	CACGTG	1 cut(s)	152
EcoNI	CCTNNNNNAGG	1 cut(s)	629
EcoT14I	CCWWGG	3 cut(s)	163, 370, 625
ErhI	CCWWGG	3 cut(s)	163, 370, 625
FaeI	CATG	7 cut(s)	383, 607, 655, 673, 679, 868, 959
FatI	CATG	7 cut(s)	379, 603, 651, 669, 675, 864, 955
FbaI	TGATCA	1 cut(s)	672
FblI	GTMKAC	1 cut(s)	52
Fnu4HI	GCNGC	7 cut(s)	309, 387, 585, 648, 918, 921, 924
FokI	GGATG	3 cut(s)	103, 115, 434
Fsp4HI	GCNGC	7 cut(s)	309, 387, 585, 648, 918, 921, 924
FspBI	CTAG	3 cut(s)	390, 749, 1018
GlaI	GCGC	1 cut(s)	781
GluI	GCNGC	7 cut(s)	309, 387, 585, 648, 918, 921, 924
GsuI	CTGGAG	1 cut(s)	486
HaeIII	GGCC	2 cut(s)	804, 960
HhaI	GCGC	1 cut(s)	782
Hin1II	CATG	7 cut(s)	383, 607, 655, 673, 679, 868, 959
Hin6I	GCGC	1 cut(s)	780
HinP1I	GCGC	1 cut(s)	780
HincII	GTYRAC	2 cut(s)	361, 667
HindII	GTYRAC	2 cut(s)	361, 667
HindIII	AAGCTT	1 cut(s)	16
HinfI	GANTC	2 cut(s)	814, 890
HphI	GGTGA	2 cut(s)	452, 572
Hpy166II	GTNNAC	3 cut(s)	53, 361, 667
Hpy188I	TCNGA	2 cut(s)	189, 703
Hpy188III	TCNNGA	2 cut(s)	405, 615
Hpy8I	GTNNAC	3 cut(s)	53, 361, 667
Hpy99I	CGWCG	1 cut(s)	971
HpyAV	CCTTC	1 cut(s)	698
HpyCH4III	ACNGT	3 cut(s)	229, 433, 644
HpyCH4IV	ACGT	2 cut(s)	151, 363
HpyCH4V	TGCA	5 cut(s)	278, 299, 311, 917, 926
HpyF10VI	GCNNNNNNNGC	5 cut(s)	305, 338, 482, 779, 923
HpyF3I	CTNAG	3 cut(s)	271, 720, 962
HpySE526I	ACGT	2 cut(s)	151, 363
Hsp92II	CATG	7 cut(s)	383, 607, 655, 673, 679, 868, 959
HspAI	GCGC	1 cut(s)	780
Ksp22I	TGATCA	1 cut(s)	672
Kzo9I	GATC	2 cut(s)	256, 672
LguI	GCTCTTC	1 cut(s)	239
LmnI	GCTCC	2 cut(s)	383, 505
Lsp1109I	GCAGC	7 cut(s)	295, 373, 596, 634, 910, 929, 932
LweI	GCATC	3 cut(s)	320, 701, 859
MaeI	CTAG	3 cut(s)	390, 749, 1018
MaeII	ACGT	2 cut(s)	151, 363
MaeIII	GTNAC	4 cut(s)	223, 322, 560, 951
MalI	GATC	2 cut(s)	258, 674
MboI	GATC	2 cut(s)	256, 672
MboII	GAAGA	3 cut(s)	99, 256, 542
MluCI	AATT	2 cut(s)	140, 174
MmeI	TCCRAC	1 cut(s)	616
MroXI	GAANNNNTTC	1 cut(s)	400
MseI	TTAA	1 cut(s)	44
MslI	CAYNNNNRTG	1 cut(s)	674
MspA1I	CMGCKG	1 cut(s)	923
MspCI	CTTAAG	1 cut(s)	43
MwoI	GCNNNNNNNGC	5 cut(s)	305, 338, 482, 779, 923
NdeII	GATC	2 cut(s)	256, 672
NlaIII	CATG	7 cut(s)	383, 607, 655, 673, 679, 868, 959
NlaIV	GGNNCC	3 cut(s)	501, 738, 772
NmuCI	GTSAC	4 cut(s)	223, 322, 560, 951
PaqCI	CACCTGC	1 cut(s)	548
PciSI	GCTCTTC	1 cut(s)	239
PdmI	GAANNNNTTC	1 cut(s)	400
PfeI	GAWTC	2 cut(s)	814, 890
PkrI	GCNGC	7 cut(s)	310, 388, 586, 649, 919, 922, 925
PmaCI	CACGTG	1 cut(s)	152
PmlI	CACGTG	1 cut(s)	152
Ppu21I	YACGTR	1 cut(s)	152
PsiI	TTATAA	1 cut(s)	206
PspCI	CACGTG	1 cut(s)	152
PspN4I	GGNNCC	3 cut(s)	501, 738, 772
PspPI	GGNCC	2 cut(s)	736, 803
PstI	CTGCAG	1 cut(s)	301
PstNI	CAGNNNCTG	2 cut(s)	893, 923
PvuII	CAGCTG	1 cut(s)	923
RsaI	GTAC	2 cut(s)	747, 791
RsaNI	GTAC	2 cut(s)	746, 790
RseI	CAYNNNNRTG	1 cut(s)	674
SapI	GCTCTTC	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	44
SatI	GCNGC	7 cut(s)	309, 387, 585, 648, 918, 921, 924
Sau3AI	GATC	2 cut(s)	256, 672
Sau96I	GGNCC	2 cut(s)	736, 803
ScaI	AGTACT	1 cut(s)	747
SfaNI	GCATC	3 cut(s)	320, 701, 859
SfcI	CTRYAG	1 cut(s)	297
SinI	GGWCC	1 cut(s)	736
SmiMI	CAYNNNNRTG	1 cut(s)	674
SmlI	CTYRAG	3 cut(s)	13, 43, 95
SmoI	CTYRAG	3 cut(s)	13, 43, 95
SpeI	ACTAGT	1 cut(s)	748
Sse9I	AATT	2 cut(s)	140, 174
SsiI	CCGC	3 cut(s)	555, 590, 834
SspI	AATATT	1 cut(s)	546
SspMI	CTAG	3 cut(s)	390, 749, 1018
StyI	CCWWGG	3 cut(s)	163, 370, 625
TaaI	ACNGT	3 cut(s)	229, 433, 644
TaiI	ACGT	2 cut(s)	154, 366
TasI	AATT	2 cut(s)	140, 174
TatI	WGTACW	2 cut(s)	745, 789
TfiI	GAWTC	2 cut(s)	814, 890
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TscAI	CASTG	1 cut(s)	724
TseFI	GTSAC	4 cut(s)	223, 322, 560, 951
TseI	GCWGC	7 cut(s)	308, 386, 584, 647, 917, 920, 923
Tsp45I	GTSAC	4 cut(s)	223, 322, 560, 951
TspDTI	ATGAA	5 cut(s)	117, 153, 591, 668, 945
TspRI	CASTG	1 cut(s)	724
Vha464I	CTTAAG	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	736
XagI	CCTNNNNNAGG	1 cut(s)	629
XmiI	GTMKAC	1 cut(s)	52
XmnI	GAANNNNTTC	1 cut(s)	400
XspI	CTAG	3 cut(s)	390, 749, 1018
ZrmI	AGTACT	1 cut(s)	747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.