Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006500

Physical Location & Seq

Genomic Coordinates Reverse (-)

57647297 .. 57650892

Gene Structure 3596 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG421900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGAGCCTGTCCTTCTTGGTCAAGCCTAGTAACTGTCACCACTTATCTTTAACTGCCATGGCAATGTCCTCGAGCTTCTGCCCTCATATTCCTAACCACTTGAGAAGTAGACCCATTTGCTCATTCCCTACAAAACCTCATTCTCTCTCTCTCAAGGCCTTCTCTTCCCAACCATCCAATGCTTCATTCACAGATGAATTGCCAGCACGTGTGGGTTTCCTTGGTCTTGGAATTATGGGTTCTCCAATGGCACAGAACCTTATAAAATCTGGGTGTGATGTGACTGTTTGGAATAGGACGAAGAGCAAATGTGATCCACTCATCAGCTTAGGTGCAAAATATAAACCCTCTCCTGCAGAAGTAGCTGCATCTTGTGATGTCACATTTGCTATGCTTGCCGACCCTGAAAGTGCTGTTGATGTTGCCCTTGGGGAGCATGGAGCTGTTAGTGGAATGAGTACAGGAAAAGGGTATGTGGATGTTTCAACTGTTGATGTTGAAACTTCTAAACTGATTAATGGTCATATCAAAGCTACTGGGGCATTATTTTTGGAGGCTCCAGTTTCGGGCTCAAAGAAACCAGCAGAAGATGGGCAACTAATATTTCTTACTGCAGGTGACAAATCTTTGTATGAAATAGCAGCACCGCTTTTGGACATCATGGGGAAGTCAAGATTTTACCTTGGAGAGGTTGGATACGGTGCTGCCATGAAACTTGTTGTCAACATGATCATGGGAAGTATGATGGCATCATTCTCGGAAGGGTTGGTTCTCACTGAGAAAATAGGACTGGACCCAAAAGTACTAGTTGAGGTGGTCTCACAGGGTGCCATTAGTGCACCAATGTACTCACTCAAAGGCCCATCAATGATTCAATCTCTCTACCCTACCGCGTTTCCCTTGAAGCATCAACAAAAGGACATGAGGCTTGCTCTGGGATTAGCAGAATCTGTTTCCCAATCTACGCCGATTGCAGCAGCTGCAAATGAACTATACAAGGTAGCAAAGTCACATGGCCTTAGCGACGAGGACTTTTCAGCAGTCATTGAAGCATTGAAACCGAAGTTGAAGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016491 GO:0016614 GO:0016616 GO:0030267 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00630 ko00650 ko01100 ko01120 ko01200 map00630 map00650 map01100 map01120 map01200

Pfam Domains

Protein Families

NAD_binding_11 NAD_binding_2

Protein Analysis

358

Amino Acids

37.86

Weight (kDa)

7.65

Isoelectric Point (pI)

35.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	70 - 229	2.9e-44	NAD binding domain of 6-phosphogluconate dehydrogenase
NAD_binding_11	PF14833	232 - 351	3.3e-27	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17650 AT1G17650
fragaria_vesca	FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660
malus_domestica	MD09G1191900.v1.1
prunus_persica	Prupe.3G048100_v2.0.a1 Prupe.3G048100_v2.0.a1
pyrus_communis	pycom09g10840
rosa_chinensis	RchiOBHm_Chr2g0143571
rosa_laevigata	RLG00000020047
rosa_multiflora	Rmu_co8457181.1_g000001 Rmu_sc0005308.1_g000001 Rmu_ssc0000231.1_g000008 Rmu_ssc0000231.1_g000012
rosa_roxburghii	Rroxscaffold_2G00101650
rosa_rugosa	Rorug02G0383900
rosa_samantha	Rh2AG435800 Rh2BG443400 Rh2CG421900 Rh2DG453800
rosa_wichuraiana	Rw2G035510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	263
AarI	CACCTGC	1 cut(s)	605
Acc36I	ACCTGC	1 cut(s)	605
AccB1I	GGYRCC	1 cut(s)	827
AccI	GTMKAC	1 cut(s)	109
AccII	CGCG	1 cut(s)	893
AciI	CCGC	2 cut(s)	647, 891
AclWI	GGATC	1 cut(s)	308
AcvI	CACGTG	1 cut(s)	209
AdeI	CACNNNGTG	1 cut(s)	827
AfaI	GTAC	3 cut(s)	460, 804, 848
AfiI	CCNNNNNNNGG	2 cut(s)	566, 688
AflIII	ACRYGT	1 cut(s)	208
AgsI	TTSAA	7 cut(s)	486, 500, 875, 904, 1049, 1057, 1069
AhlI	ACTAGT	1 cut(s)	805
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AluBI	AGCT	6 cut(s)	75, 327, 365, 443, 533, 980
AluI	AGCT	6 cut(s)	75, 327, 365, 443, 533, 980
Alw21I	GWGCWC	1 cut(s)	841
Alw26I	GTCTC	1 cut(s)	823
Alw44I	GTGCAC	1 cut(s)	837
AlwI	GGATC	1 cut(s)	308
AlwNI	CAGNNNCTG	2 cut(s)	950, 980
Ama87I	CYCGRG	1 cut(s)	70
AoxI	GGCC	3 cut(s)	156, 859, 1015
ApaLI	GTGCAC	1 cut(s)	837
ApeKI	GCWGC	6 cut(s)	365, 641, 704, 974, 977, 980
AseI	ATTAAT	1 cut(s)	516
AspS9I	GGNCC	2 cut(s)	793, 860
AsuHPI	GGTGA	2 cut(s)	29, 629
AvaI	CYCGRG	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	793
BaeGI	GKGCMC	1 cut(s)	841
BanI	GGYRCC	1 cut(s)	827
BanII	GRGCYC	1 cut(s)	572
BbrPI	CACGTG	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	841
BbvI	GCAGC	6 cut(s)	352, 653, 691, 967, 986, 989
BccI	CCATC	4 cut(s)	181, 584, 739, 871
BcgI	CGANNNNNNTGC	4 cut(s)	51, 85, 738, 772
BciVI	GTATCC	1 cut(s)	689
BclI	TGATCA	1 cut(s)	729
BcoDI	GTCTC	1 cut(s)	823
BcuI	ACTAGT	1 cut(s)	805
BfaI	CTAG	3 cut(s)	27, 806, 1075
BfmI	CTRYAG	2 cut(s)	354, 612
BfuAI	ACCTGC	1 cut(s)	605
BfuI	GTATCC	1 cut(s)	689
BisI	GCNGC	6 cut(s)	366, 642, 705, 975, 978, 981
BlsI	GCNGC	6 cut(s)	367, 643, 706, 976, 979, 982
BmcAI	AGTACT	1 cut(s)	804
Bme18I	GGWCC	1 cut(s)	793
BmeT110I	CYCGRG	1 cut(s)	70
BmgT120I	GGNCC	2 cut(s)	793, 860
BmiI	GGNNCC	3 cut(s)	558, 795, 829
BmrI	ACTGGG	1 cut(s)	546
BmsI	GCATC	3 cut(s)	377, 758, 916
BmuI	ACTGGG	1 cut(s)	546
BplI	GAGNNNNNCTC	4 cut(s)	803, 835, 916, 948
BpmI	CTGGAG	1 cut(s)	543
Bpu10I	CCTNAGC	2 cut(s)	328, 1019
BpuEI	CTTGAG	2 cut(s)	121, 137
BsaAI	YACGTR	1 cut(s)	209
BsaI	GGTCTC	1 cut(s)	823
BsaJI	CCNNGG	4 cut(s)	57, 220, 427, 682
Bsc4I	CCNNNNNNNGG	2 cut(s)	566, 688
Bse1I	ACTGG	3 cut(s)	541, 560, 795
Bse3DI	GCAATG	1 cut(s)	69
BseDI	CCNNGG	4 cut(s)	57, 220, 427, 682
BseGI	GGATG	2 cut(s)	173, 484
BseLI	CCNNNNNNNGG	2 cut(s)	566, 688
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	1 cut(s)	768
BseNI	ACTGG	3 cut(s)	541, 560, 795
BseSI	GKGCMC	1 cut(s)	841
BseXI	GCAGC	6 cut(s)	352, 653, 691, 967, 986, 989
Bsh1236I	CGCG	1 cut(s)	893
BshFI	GGCC	3 cut(s)	158, 861, 1017
BshNI	GGYRCC	1 cut(s)	827
BsiHKAI	GWGCWC	1 cut(s)	841
BsiHKCI	CYCGRG	1 cut(s)	70
BslI	CCNNNNNNNGG	2 cut(s)	566, 688
BsmAI	GTCTC	1 cut(s)	823
BsnI	GGCC	3 cut(s)	158, 861, 1017
Bso31I	GGTCTC	1 cut(s)	823
BsoBI	CYCGRG	1 cut(s)	70
Bsp1286I	GDGCHC	2 cut(s)	572, 841
Bsp143I	GATC	2 cut(s)	313, 729
Bsp19I	CCATGG	1 cut(s)	57
BspACI	CCGC	2 cut(s)	647, 891
BspANI	GGCC	3 cut(s)	158, 861, 1017
BspCNI	CTCAG	1 cut(s)	769
BspFNI	CGCG	1 cut(s)	893
BspLI	GGNNCC	3 cut(s)	558, 795, 829
BspMAI	CTGCAG	2 cut(s)	358, 616
BspMI	ACCTGC	1 cut(s)	605
BspPI	GGATC	1 cut(s)	308
BspQI	GCTCTTC	1 cut(s)	296
BspT107I	GGYRCC	1 cut(s)	827
BspTNI	GGTCTC	1 cut(s)	823
BsrDI	GCAATG	1 cut(s)	69
BsrI	ACTGG	3 cut(s)	541, 560, 795
BssECI	CCNNGG	4 cut(s)	57, 220, 427, 682
BssMI	GATC	2 cut(s)	313, 729
BssT1I	CCWWGG	4 cut(s)	57, 220, 427, 682
Bst4CI	ACNGT	4 cut(s)	35, 286, 490, 701
Bst6I	CTCTTC	2 cut(s)	169, 296
BstAPI	GCANNNNNTGC	1 cut(s)	980
BstBAI	YACGTR	1 cut(s)	209
BstC8I	GCNNGC	3 cut(s)	204, 396, 930
BstDEI	CTNAG	3 cut(s)	328, 777, 1019
BstDSI	CCRYGG	1 cut(s)	57
BstENI	CCTNNNNNAGG	1 cut(s)	686
BstF5I	GGATG	2 cut(s)	173, 484
BstFNI	CGCG	1 cut(s)	893
BstKTI	GATC	2 cut(s)	316, 732
BstMAI	GTCTC	1 cut(s)	823
BstMBI	GATC	2 cut(s)	313, 729
BstMWI	GCNNNNNNNGC	5 cut(s)	362, 395, 539, 836, 980
BstSFI	CTRYAG	2 cut(s)	354, 612
BstSLI	GKGCMC	1 cut(s)	841
BstUI	CGCG	1 cut(s)	893
BstV1I	GCAGC	6 cut(s)	352, 653, 691, 967, 986, 989
BsuI	GTATCC	1 cut(s)	689
BsuRI	GGCC	3 cut(s)	158, 861, 1017
BtgI	CCRYGG	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	173, 484
BtsIMutI	CAGTG	1 cut(s)	774
BveI	ACCTGC	1 cut(s)	605
Cac8I	GCNNGC	3 cut(s)	204, 396, 930
CaiI	CAGNNNCTG	2 cut(s)	950, 980
Cfr13I	GGNCC	2 cut(s)	793, 860
Csp6I	GTAC	3 cut(s)	459, 803, 847
CviAII	CATG	8 cut(s)	58, 437, 661, 709, 727, 733, 922, 1013
CviQI	GTAC	3 cut(s)	459, 803, 847
DdeI	CTNAG	3 cut(s)	328, 777, 1019
DpnI	GATC	2 cut(s)	315, 731
DpnII	GATC	2 cut(s)	313, 729
DraIII	CACNNNGTG	1 cut(s)	827
Eam1104I	CTCTTC	2 cut(s)	169, 296
EarI	CTCTTC	2 cut(s)	169, 296
Eco130I	CCWWGG	4 cut(s)	57, 220, 427, 682
Eco147I	AGGCCT	1 cut(s)	158
Eco24I	GRGCYC	1 cut(s)	572
Eco31I	GGTCTC	1 cut(s)	823
Eco47I	GGWCC	1 cut(s)	793
Eco72I	CACGTG	1 cut(s)	209
Eco88I	CYCGRG	1 cut(s)	70
EcoNI	CCTNNNNNAGG	1 cut(s)	686
EcoT14I	CCWWGG	4 cut(s)	57, 220, 427, 682
EcoT38I	GRGCYC	1 cut(s)	572
ErhI	CCWWGG	4 cut(s)	57, 220, 427, 682
FaeI	CATG	8 cut(s)	61, 440, 664, 712, 730, 736, 925, 1016
FatI	CATG	8 cut(s)	57, 436, 660, 708, 726, 732, 921, 1012
FbaI	TGATCA	1 cut(s)	729
FblI	GTMKAC	1 cut(s)	109
Fnu4HI	GCNGC	6 cut(s)	366, 642, 705, 975, 978, 981
FokI	GGATG	2 cut(s)	160, 491
FriOI	GRGCYC	1 cut(s)	572
Fsp4HI	GCNGC	6 cut(s)	366, 642, 705, 975, 978, 981
FspBI	CTAG	3 cut(s)	27, 806, 1075
GluI	GCNGC	6 cut(s)	366, 642, 705, 975, 978, 981
GsuI	CTGGAG	1 cut(s)	543
HaeIII	GGCC	3 cut(s)	158, 861, 1017
Hin1II	CATG	8 cut(s)	61, 440, 664, 712, 730, 736, 925, 1016
HincII	GTYRAC	1 cut(s)	724
HindII	GTYRAC	1 cut(s)	724
HinfI	GANTC	2 cut(s)	871, 947
HphI	GGTGA	2 cut(s)	29, 629
Hpy166II	GTNNAC	3 cut(s)	110, 724, 839
Hpy188I	TCNGA	1 cut(s)	760
Hpy188III	TCNNGA	1 cut(s)	672
Hpy8I	GTNNAC	3 cut(s)	110, 724, 839
Hpy99I	CGWCG	1 cut(s)	1028
HpyAV	CCTTC	3 cut(s)	22, 169, 755
HpyCH4III	ACNGT	4 cut(s)	35, 286, 490, 701
HpyCH4IV	ACGT	1 cut(s)	208
HpyCH4V	TGCA	7 cut(s)	335, 356, 368, 614, 839, 974, 983
HpyF10VI	GCNNNNNNNGC	5 cut(s)	362, 395, 539, 836, 980
HpyF3I	CTNAG	3 cut(s)	328, 777, 1019
HpySE526I	ACGT	1 cut(s)	208
Hsp92II	CATG	8 cut(s)	61, 440, 664, 712, 730, 736, 925, 1016
Ksp22I	TGATCA	1 cut(s)	729
Kzo9I	GATC	2 cut(s)	313, 729
LguI	GCTCTTC	1 cut(s)	296
LmnI	GCTCC	3 cut(s)	433, 440, 562
Lsp1109I	GCAGC	6 cut(s)	352, 653, 691, 967, 986, 989
LweI	GCATC	3 cut(s)	377, 758, 916
MaeI	CTAG	3 cut(s)	27, 806, 1075
MaeII	ACGT	1 cut(s)	208
MaeIII	GTNAC	6 cut(s)	29, 35, 280, 379, 617, 1008
MalI	GATC	2 cut(s)	315, 731
MboI	GATC	2 cut(s)	313, 729
MboII	GAAGA	3 cut(s)	156, 313, 599
MhlI	GDGCHC	2 cut(s)	572, 841
MluCI	AATT	2 cut(s)	197, 231
MmeI	TCCRAC	1 cut(s)	673
MnlI	CCTC	9 cut(s)	79, 93, 147, 358, 547, 682, 805, 918, 1021
MseI	TTAA	2 cut(s)	50, 516
MslI	CAYNNNNRTG	2 cut(s)	62, 731
MspA1I	CMGCKG	1 cut(s)	980
MvnI	CGCG	1 cut(s)	893
MwoI	GCNNNNNNNGC	5 cut(s)	362, 395, 539, 836, 980
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	2 cut(s)	313, 729
NlaIII	CATG	8 cut(s)	61, 440, 664, 712, 730, 736, 925, 1016
NlaIV	GGNNCC	3 cut(s)	558, 795, 829
NmuCI	GTSAC	5 cut(s)	35, 280, 379, 617, 1008
PaeR7I	CTCGAG	1 cut(s)	70
PaqCI	CACCTGC	1 cut(s)	605
PceI	AGGCCT	1 cut(s)	158
PciSI	GCTCTTC	1 cut(s)	296
PfeI	GAWTC	2 cut(s)	871, 947
PkrI	GCNGC	6 cut(s)	367, 643, 706, 976, 979, 982
PmaCI	CACGTG	1 cut(s)	209
PmlI	CACGTG	1 cut(s)	209
Ppu21I	YACGTR	1 cut(s)	209
PshBI	ATTAAT	1 cut(s)	516
PsiI	TTATAA	1 cut(s)	263
PspCI	CACGTG	1 cut(s)	209
PspN4I	GGNNCC	3 cut(s)	558, 795, 829
PspPI	GGNCC	2 cut(s)	793, 860
PspXI	VCTCGAGB	1 cut(s)	70
PstI	CTGCAG	2 cut(s)	358, 616
PstNI	CAGNNNCTG	2 cut(s)	950, 980
PvuII	CAGCTG	1 cut(s)	980
RsaI	GTAC	3 cut(s)	460, 804, 848
RsaNI	GTAC	3 cut(s)	459, 803, 847
RseI	CAYNNNNRTG	2 cut(s)	62, 731
SapI	GCTCTTC	1 cut(s)	296
SaqAI	TTAA	2 cut(s)	50, 516
SatI	GCNGC	6 cut(s)	366, 642, 705, 975, 978, 981
Sau3AI	GATC	2 cut(s)	313, 729
Sau96I	GGNCC	2 cut(s)	793, 860
ScaI	AGTACT	1 cut(s)	804
SduI	GDGCHC	2 cut(s)	572, 841
SfaNI	GCATC	3 cut(s)	377, 758, 916
SfcI	CTRYAG	2 cut(s)	354, 612
Sfr274I	CTCGAG	1 cut(s)	70
SinI	GGWCC	1 cut(s)	793
SlaI	CTCGAG	1 cut(s)	70
SmiMI	CAYNNNNRTG	2 cut(s)	62, 731
SmlI	CTYRAG	3 cut(s)	70, 100, 152
SmoI	CTYRAG	3 cut(s)	70, 100, 152
SpeI	ACTAGT	1 cut(s)	805
Sse9I	AATT	2 cut(s)	197, 231
SseBI	AGGCCT	1 cut(s)	158
SsiI	CCGC	2 cut(s)	647, 891
SspI	AATATT	1 cut(s)	603
SspMI	CTAG	3 cut(s)	27, 806, 1075
StuI	AGGCCT	1 cut(s)	158
StyI	CCWWGG	4 cut(s)	57, 220, 427, 682
TaaI	ACNGT	4 cut(s)	35, 286, 490, 701
TaiI	ACGT	1 cut(s)	211
TaqI	TCGA	1 cut(s)	71
TasI	AATT	2 cut(s)	197, 231
TatI	WGTACW	3 cut(s)	458, 802, 846
TfiI	GAWTC	2 cut(s)	871, 947
Tru1I	TTAA	2 cut(s)	50, 516
Tru9I	TTAA	2 cut(s)	50, 516
TscAI	CASTG	1 cut(s)	781
TseFI	GTSAC	5 cut(s)	35, 280, 379, 617, 1008
TseI	GCWGC	6 cut(s)	365, 641, 704, 974, 977, 980
Tsp45I	GTSAC	5 cut(s)	35, 280, 379, 617, 1008
TspDTI	ATGAA	5 cut(s)	174, 210, 648, 725, 1002
TspRI	CASTG	1 cut(s)	781
VneI	GTGCAC	1 cut(s)	837
VpaK11BI	GGWCC	1 cut(s)	793
VspI	ATTAAT	1 cut(s)	516
XagI	CCTNNNNNAGG	1 cut(s)	686
XhoI	CTCGAG	1 cut(s)	70
XmiI	GTMKAC	1 cut(s)	109
XspI	CTAG	3 cut(s)	27, 806, 1075
ZrmI	AGTACT	1 cut(s)	804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.