Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006500

Physical Location & Seq

Genomic Coordinates Forward (+)

17032262 .. 17036614

Gene Structure 4353 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1191900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGTCCTTGTTGGTAAAGACCACCAACTGTTCCCGTTTATCTTCAACCGCCATGGCAGTGTGCTCAAGCTTTTGCCCTCACATTCCAACCCGCCTTACAAAATCATTCCCTGCAAAGCCACACTCTCTCTCTTTCAAGGCTTTCTCTTCTCAAGCATCCAATGCTTCATCCAAAGATGAGTTGCCAGCACGCGTGGGGTTCCTAGGCCTCGGAATTATGGGTTCTCCAATGGCACAGAACCTCATAAAATCTGGGTGTGATGTGACTGTTTGGAATAGGACCAAAAGCAAATGTGATCCACTTATCAGCTTAGGTGCAAAATATAAACCCTCTCCTGAGGAAGTGGCTGCATCTTGTGATGTCACATTTGCCATGCTTGCCGACCCTGAAAGTGCTGTTGCTGTTGCTTTGGGGAAGCATGGAGCTGCCAATGGAATGAGTTCAGGAAAAGGGTATGTGGATGTTTCAACTGTTGATGTTGCAACTTCTAAATTGATTGGCGGAAATATCAAAGCTACCGGGGCATCGTTTTTAGAGGCAAGCTGCTTTTTTTCAGGTTCAAAAAAACCAGCTGAAGATGGGCAACTAATATTTCTTACTGCAGGAGACAAATCTCTGTATGAAACAGTAGCATCCCTTTTGGATATCATGGGGAAGTCAAGATTTTACCTTGGGGAGGTCGGAAATGGTGCTGCTATGAAACTTGTTGTCAACATGATTATGGGAAGTATGATGGCATCCTTTTCTGAGGGCTTGCTTCTCACTGAGAAAATAGGACTGGACCCGAAAGTACTAGTTGAGGTCGTCTCACAGGGAGCCATTAGTGCACCAATGTACTCAATGAAAGGCCCATCAATGATTCAATCCGTCTATCCTACCGCATTTCCCTTGAAGCATCAACAGAAGGACATGAGGCTTGCTCTGGGATTAGCAGAATCTGTTTCCCAATCTACGCCGATTGCAGCAGCTGCAAATGAACTATACAAGGTCGCAAAATCACACGGCCTCAGCGACGAGGACTTTTCAGCAGTCATTGAAGCATTGAAACCGAAGTTGAAGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016491 GO:0016614 GO:0016616 GO:0030267 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00630 ko00650 ko01100 ko01120 ko01200 map00630 map00650 map01100 map01120 map01200

Pfam Domains

Protein Families

NAD_binding_11 NAD_binding_2

Protein Analysis

355

Amino Acids

37.14

Weight (kDa)

8.82

Isoelectric Point (pI)

31.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	64 - 225	4.5e-39	NAD binding domain of 6-phosphogluconate dehydrogenase
NAD_binding_11	PF14833	228 - 347	6.8e-28	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17650 AT1G17650
fragaria_vesca	FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660
malus_domestica	MD09G1191900.v1.1
prunus_persica	Prupe.3G048100_v2.0.a1 Prupe.3G048100_v2.0.a1
pyrus_communis	pycom09g10840
rosa_chinensis	RchiOBHm_Chr2g0143571
rosa_laevigata	RLG00000020047
rosa_multiflora	Rmu_co8457181.1_g000001 Rmu_sc0005308.1_g000001 Rmu_ssc0000231.1_g000008 Rmu_ssc0000231.1_g000012
rosa_roxburghii	Rroxscaffold_2G00101650
rosa_rugosa	Rorug02G0383900
rosa_samantha	Rh2AG435800 Rh2BG443400 Rh2CG421900 Rh2DG453800
rosa_wichuraiana	Rw2G035510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	192
AciI	CCGC	4 cut(s)	48, 91, 501, 879
AclWI	GGATC	1 cut(s)	290
AcuI	CTGAAG	1 cut(s)	594
AfaI	GTAC	2 cut(s)	792, 836
AfiI	CCNNNNNNNGG	1 cut(s)	676
AflIII	ACRYGT	1 cut(s)	190
AgsI	TTSAA	9 cut(s)	45, 136, 468, 561, 863, 892, 1037, 1045, 1057
AhlI	ACTAGT	1 cut(s)	793
AluBI	AGCT	7 cut(s)	69, 309, 425, 515, 543, 572, 968
AluI	AGCT	7 cut(s)	69, 309, 425, 515, 543, 572, 968
Alw21I	GWGCWC	2 cut(s)	65, 829
Alw26I	GTCTC	2 cut(s)	600, 811
Alw44I	GTGCAC	1 cut(s)	825
AlwI	GGATC	1 cut(s)	290
AlwNI	CAGNNNCTG	2 cut(s)	938, 968
AoxI	GGCC	3 cut(s)	205, 847, 1003
ApaLI	GTGCAC	1 cut(s)	825
ApeKI	GCWGC	7 cut(s)	347, 425, 543, 692, 962, 965, 968
Asp700I	GAANNNNTTC	1 cut(s)	439
AspA2I	CCTAGG	1 cut(s)	202
AspS9I	GGNCC	3 cut(s)	279, 781, 848
AsuC2I	CCSGG	1 cut(s)	520
AvaII	GGWCC	2 cut(s)	279, 781
AvrII	CCTAGG	1 cut(s)	202
AxyI	CCTNAGG	1 cut(s)	336
BaeGI	GKGCMC	1 cut(s)	829
Bbv12I	GWGCWC	2 cut(s)	65, 829
BbvCI	CCTCAGC	1 cut(s)	1007
BbvI	GCAGC	7 cut(s)	334, 412, 530, 679, 955, 974, 977
BccI	CCATC	3 cut(s)	572, 727, 859
BceAI	ACGGC	1 cut(s)	1018
BcnI	CCSGG	1 cut(s)	520
BcoDI	GTCTC	2 cut(s)	600, 811
BcuI	ACTAGT	1 cut(s)	793
BfaI	CTAG	3 cut(s)	203, 794, 1063
BfmI	CTRYAG	1 cut(s)	600
BisI	GCNGC	7 cut(s)	348, 426, 544, 693, 963, 966, 969
BlnI	CCTAGG	1 cut(s)	202
BlsI	GCNGC	7 cut(s)	349, 427, 545, 694, 964, 967, 970
BmcAI	AGTACT	1 cut(s)	792
Bme1390I	CCNGG	1 cut(s)	520
Bme18I	GGWCC	2 cut(s)	279, 781
BmgT120I	GGNCC	3 cut(s)	279, 781, 848
BmiI	GGNNCC	3 cut(s)	200, 783, 817
BmrFI	CCNGG	1 cut(s)	520
BmsI	GCATC	6 cut(s)	164, 359, 533, 641, 746, 904
BplI	GAGNNNNNCTC	4 cut(s)	791, 823, 904, 936
Bpu10I	CCTNAGC	2 cut(s)	310, 1007
BpuEI	CTTGAG	2 cut(s)	49, 135
BpuMI	CCSGG	1 cut(s)	520
BsaJI	CCNNGG	5 cut(s)	51, 202, 208, 519, 670
Bsc4I	CCNNNNNNNGG	1 cut(s)	676
Bse1I	ACTGG	1 cut(s)	783
Bse21I	CCTNAGG	1 cut(s)	336
BseDI	CCNNGG	5 cut(s)	51, 202, 208, 519, 670
BseGI	GGATG	5 cut(s)	155, 167, 466, 632, 737
BseLI	CCNNNNNNNGG	1 cut(s)	676
BseMII	CTCAG	4 cut(s)	327, 738, 756, 1021
BseNI	ACTGG	1 cut(s)	783
BseSI	GKGCMC	1 cut(s)	829
BseXI	GCAGC	7 cut(s)	334, 412, 530, 679, 955, 974, 977
Bsh1236I	CGCG	1 cut(s)	192
BshFI	GGCC	3 cut(s)	207, 849, 1005
BsiHKAI	GWGCWC	2 cut(s)	65, 829
BsiSI	CCGG	1 cut(s)	519
BslI	CCNNNNNNNGG	1 cut(s)	676
BsmAI	GTCTC	2 cut(s)	600, 811
BsmBI	CGTCTC	1 cut(s)	811
BsnI	GGCC	3 cut(s)	207, 849, 1005
Bsp1286I	GDGCHC	2 cut(s)	65, 829
Bsp143I	GATC	1 cut(s)	295
Bsp19I	CCATGG	1 cut(s)	51
BspACI	CCGC	4 cut(s)	48, 91, 501, 879
BspANI	GGCC	3 cut(s)	207, 849, 1005
BspCNI	CTCAG	4 cut(s)	328, 739, 757, 1020
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	3 cut(s)	200, 783, 817
BspMAI	CTGCAG	1 cut(s)	604
BspPI	GGATC	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	783
BssECI	CCNNGG	5 cut(s)	51, 202, 208, 519, 670
BssMI	GATC	1 cut(s)	295
BssT1I	CCWWGG	3 cut(s)	51, 202, 670
Bst4CI	ACNGT	4 cut(s)	29, 268, 472, 628
Bst6I	CTCTTC	1 cut(s)	151
BstAPI	GCANNNNNTGC	2 cut(s)	161, 968
BstC8I	GCNNGC	6 cut(s)	186, 190, 378, 541, 755, 918
BstDEI	CTNAG	5 cut(s)	310, 336, 747, 765, 1007
BstDSI	CCRYGG	1 cut(s)	51
BstENI	CCTNNNNNAGG	1 cut(s)	674
BstF5I	GGATG	5 cut(s)	155, 167, 466, 632, 737
BstFNI	CGCG	1 cut(s)	192
BstKTI	GATC	1 cut(s)	298
BstMAI	GTCTC	2 cut(s)	600, 811
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	5 cut(s)	161, 377, 521, 824, 968
BstSCI	CCNGG	1 cut(s)	518
BstSFI	CTRYAG	1 cut(s)	600
BstSLI	GKGCMC	1 cut(s)	829
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	7 cut(s)	334, 412, 530, 679, 955, 974, 977
Bsu36I	CCTNAGG	1 cut(s)	336
BsuRI	GGCC	3 cut(s)	207, 849, 1005
BtgI	CCRYGG	1 cut(s)	51
BtsCI	GGATG	5 cut(s)	155, 167, 466, 632, 737
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	2 cut(s)	63, 762
Cac8I	GCNNGC	6 cut(s)	186, 190, 378, 541, 755, 918
CaiI	CAGNNNCTG	2 cut(s)	938, 968
Cfr13I	GGNCC	3 cut(s)	279, 781, 848
Csp6I	GTAC	2 cut(s)	791, 835
CviAII	CATG	6 cut(s)	52, 373, 419, 649, 715, 910
CviQI	GTAC	2 cut(s)	791, 835
DdeI	CTNAG	5 cut(s)	310, 336, 747, 765, 1007
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
EciI	GGCGGA	1 cut(s)	516
Eco130I	CCWWGG	3 cut(s)	51, 202, 670
Eco147I	AGGCCT	1 cut(s)	207
Eco32I	GATATC	1 cut(s)	646
Eco47I	GGWCC	2 cut(s)	279, 781
Eco57I	CTGAAG	1 cut(s)	594
Eco81I	CCTNAGG	1 cut(s)	336
EcoNI	CCTNNNNNAGG	1 cut(s)	674
EcoRV	GATATC	1 cut(s)	646
EcoT14I	CCWWGG	3 cut(s)	51, 202, 670
ErhI	CCWWGG	3 cut(s)	51, 202, 670
Esp3I	CGTCTC	1 cut(s)	811
FaeI	CATG	6 cut(s)	55, 376, 422, 652, 718, 913
FatI	CATG	6 cut(s)	51, 372, 418, 648, 714, 909
FauI	CCCGC	1 cut(s)	98
Fnu4HI	GCNGC	7 cut(s)	348, 426, 544, 693, 963, 966, 969
FokI	GGATG	5 cut(s)	142, 154, 473, 619, 724
Fsp4HI	GCNGC	7 cut(s)	348, 426, 544, 693, 963, 966, 969
FspBI	CTAG	3 cut(s)	203, 794, 1063
GluI	GCNGC	7 cut(s)	348, 426, 544, 693, 963, 966, 969
HaeIII	GGCC	3 cut(s)	207, 849, 1005
HapII	CCGG	1 cut(s)	519
Hin1II	CATG	6 cut(s)	55, 376, 422, 652, 718, 913
HincII	GTYRAC	1 cut(s)	712
HindII	GTYRAC	1 cut(s)	712
HindIII	AAGCTT	1 cut(s)	67
HinfI	GANTC	2 cut(s)	859, 935
HpaII	CCGG	1 cut(s)	519
Hpy166II	GTNNAC	2 cut(s)	712, 827
Hpy188I	TCNGA	3 cut(s)	212, 683, 748
Hpy188III	TCNNGA	3 cut(s)	335, 444, 660
Hpy8I	GTNNAC	2 cut(s)	712, 827
Hpy99I	CGWCG	1 cut(s)	1016
HpyAV	CCTTC	1 cut(s)	898
HpyCH4III	ACNGT	4 cut(s)	29, 268, 472, 628
HpyCH4V	TGCA	8 cut(s)	113, 317, 350, 482, 602, 827, 962, 971
HpyF10VI	GCNNNNNNNGC	5 cut(s)	161, 377, 521, 824, 968
HpyF3I	CTNAG	5 cut(s)	310, 336, 747, 765, 1007
Hsp92II	CATG	6 cut(s)	55, 376, 422, 652, 718, 913
Kzo9I	GATC	1 cut(s)	295
LmnI	GCTCC	2 cut(s)	422, 815
Lsp1109I	GCAGC	7 cut(s)	334, 412, 530, 679, 955, 974, 977
LweI	GCATC	6 cut(s)	164, 359, 533, 641, 746, 904
MaeI	CTAG	3 cut(s)	203, 794, 1063
MaeIII	GTNAC	2 cut(s)	262, 361
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MboII	GAAGA	3 cut(s)	33, 138, 587
MhlI	GDGCHC	2 cut(s)	65, 829
MluCI	AATT	2 cut(s)	213, 491
MluI	ACGCGT	1 cut(s)	190
MmeI	TCCRAC	2 cut(s)	110, 661
MroXI	GAANNNNTTC	1 cut(s)	439
MslI	CAYNNNNRTG	2 cut(s)	56, 719
MspA1I	CMGCKG	2 cut(s)	572, 968
MspI	CCGG	1 cut(s)	519
MspR9I	CCNGG	1 cut(s)	520
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	5 cut(s)	161, 377, 521, 824, 968
NciI	CCSGG	1 cut(s)	520
NcoI	CCATGG	1 cut(s)	51
NdeII	GATC	1 cut(s)	295
NlaIII	CATG	6 cut(s)	55, 376, 422, 652, 718, 913
NlaIV	GGNNCC	3 cut(s)	200, 783, 817
NmuCI	GTSAC	2 cut(s)	262, 361
PceI	AGGCCT	1 cut(s)	207
PcsI	WCGNNNNNNNCGW	1 cut(s)	1008
PdmI	GAANNNNTTC	1 cut(s)	439
PfeI	GAWTC	2 cut(s)	859, 935
PkrI	GCNGC	7 cut(s)	349, 427, 545, 694, 964, 967, 970
PspN4I	GGNNCC	3 cut(s)	200, 783, 817
PspPI	GGNCC	3 cut(s)	279, 781, 848
PstI	CTGCAG	1 cut(s)	604
PstNI	CAGNNNCTG	2 cut(s)	938, 968
PvuII	CAGCTG	2 cut(s)	572, 968
RsaI	GTAC	2 cut(s)	792, 836
RsaNI	GTAC	2 cut(s)	791, 835
RseI	CAYNNNNRTG	2 cut(s)	56, 719
SatI	GCNGC	7 cut(s)	348, 426, 544, 693, 963, 966, 969
Sau3AI	GATC	1 cut(s)	295
Sau96I	GGNCC	3 cut(s)	279, 781, 848
ScaI	AGTACT	1 cut(s)	792
ScrFI	CCNGG	1 cut(s)	520
SduI	GDGCHC	2 cut(s)	65, 829
SfaNI	GCATC	6 cut(s)	164, 359, 533, 641, 746, 904
SfcI	CTRYAG	1 cut(s)	600
SinI	GGWCC	2 cut(s)	279, 781
SmiMI	CAYNNNNRTG	2 cut(s)	56, 719
SmlI	CTYRAG	2 cut(s)	64, 150
SmoI	CTYRAG	2 cut(s)	64, 150
SpeI	ACTAGT	1 cut(s)	793
Sse9I	AATT	2 cut(s)	213, 491
SseBI	AGGCCT	1 cut(s)	207
SsiI	CCGC	4 cut(s)	48, 91, 501, 879
SspI	AATATT	1 cut(s)	591
SspMI	CTAG	3 cut(s)	203, 794, 1063
StuI	AGGCCT	1 cut(s)	207
StyD4I	CCNGG	1 cut(s)	518
StyI	CCWWGG	3 cut(s)	51, 202, 670
TaaI	ACNGT	4 cut(s)	29, 268, 472, 628
TasI	AATT	2 cut(s)	213, 491
TatI	WGTACW	2 cut(s)	790, 834
TfiI	GAWTC	2 cut(s)	859, 935
TscAI	CASTG	2 cut(s)	63, 769
TseFI	GTSAC	2 cut(s)	262, 361
TseI	GCWGC	7 cut(s)	347, 425, 543, 692, 962, 965, 968
Tsp45I	GTSAC	2 cut(s)	262, 361
TspDTI	ATGAA	5 cut(s)	156, 636, 713, 857, 990
TspGWI	ACGGA	1 cut(s)	856
TspRI	CASTG	2 cut(s)	63, 769
VneI	GTGCAC	1 cut(s)	825
VpaK11BI	GGWCC	2 cut(s)	279, 781
XagI	CCTNNNNNAGG	1 cut(s)	674
XmaJI	CCTAGG	1 cut(s)	202
XmnI	GAANNNNTTC	1 cut(s)	439
XspI	CTAG	3 cut(s)	203, 794, 1063
ZrmI	AGTACT	1 cut(s)	792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.