Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0006500

Physical Location & Seq

Genomic Coordinates Reverse (-)

58562038 .. 58565906

Gene Structure 3869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G035510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCAATGTCCTCGAGCTTCTGCCCTCAGATTCCTAGCCACTTGAGAAGTAGACCCATTTGCTCATTCCCTACAAAACCTCTCTCTCTCTCTCTCAAGGCCTTCTCTTCCCAGCCATCCAATGCTTCATTCACAGATGAATTGCCAGCACGTGTGGGTTTCCTTGGTCTTGGAATTATGGGTTCTCCAATGGCACAGAACCTTATAAAATCTGGGTGTGACGTGACTGTTTGGAATAGGACGAAGAGCAAATGTGATCCACTCATCAGCTTAGGTGCAAAATATAAACCCTCTCCTGCAGAAGTAGCTGCATCTTGTGATGTCACATTTGCTATGCTTGCCGACCCTGAAAGTGCTGTTGATGTTGCCCTTGGGGAGCATGGAGCTGTTAGTGGAATGAGTACAGGAAAAGGGTATGTGGATGTTTCAACTGTTGATGTTGAAACTTCAAAACTGATTAATGGTCATATCAAAGCTACTGGGGCATTATTTTTGGAGGCTCCAGTTTCGGGCTCAAAGAAACCAGCAGAAGATGGGCAACTAATATTTCTTACTGCAGGTGACAAATCTTTGTATGAAATAGCAGCACCGCTTTTGGACATCATGGGGAAGTCAAGATTTTACCTTGGAGAGGTTGGATACGGTGCTGCCATGAAACTTGTTGTCAACATGATCATGGGAAGTATGATGGCATCATTCTCGGAAGGGTTGGTTCTCACTGAGAAAATAGGACTGGACCCAAAAGTACTAGTTGAGGTGGTCTCACAGGGTGCCATTAGCGCACCAATGTACTCACTCAAAGGCCCATCAATGATTCAATCTCTCTACCCTACCGCGTTTCCCTTGAAGCATCAACAAAAGGACATGAGGCTTGCTCTGGGATTAGCAGAATCTGTTTCCCAATCTACGCCGATTGCAGCAGCTGCAAATGAACTATACAAGGTAGCAAAGTCACATGGCCTTAGCGACGAGGACTTTTCAGCAGTCATTGAAGCATTGAAACCGAAGTTGAAGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016491 GO:0016614 GO:0016616 GO:0030267 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00630 ko00650 ko01100 ko01120 ko01200 map00630 map00650 map01100 map01120 map01200

Pfam Domains

Protein Families

NAD_binding_11 NAD_binding_2

Protein Analysis

339

Amino Acids

35.74

Weight (kDa)

7.0

Isoelectric Point (pI)

34.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	51 - 210	2.5e-44	NAD binding domain of 6-phosphogluconate dehydrogenase
NAD_binding_11	PF14833	213 - 332	3e-27	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17650 AT1G17650
fragaria_vesca	FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660
malus_domestica	MD09G1191900.v1.1
prunus_persica	Prupe.3G048100_v2.0.a1 Prupe.3G048100_v2.0.a1
pyrus_communis	pycom09g10840
rosa_chinensis	RchiOBHm_Chr2g0143571
rosa_laevigata	RLG00000020047
rosa_multiflora	Rmu_co8457181.1_g000001 Rmu_sc0005308.1_g000001 Rmu_ssc0000231.1_g000008 Rmu_ssc0000231.1_g000012
rosa_roxburghii	Rroxscaffold_2G00101650
rosa_rugosa	Rorug02G0383900
rosa_samantha	Rh2AG435800 Rh2BG443400 Rh2CG421900 Rh2DG453800
rosa_wichuraiana	Rw2G035510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	206
AarI	CACCTGC	1 cut(s)	548
Acc36I	ACCTGC	1 cut(s)	548
AccB1I	GGYRCC	1 cut(s)	770
AccI	GTMKAC	1 cut(s)	52
AccII	CGCG	1 cut(s)	836
AciI	CCGC	2 cut(s)	590, 834
AclWI	GGATC	1 cut(s)	251
AcvI	CACGTG	1 cut(s)	152
AdeI	CACNNNGTG	1 cut(s)	770
AfaI	GTAC	3 cut(s)	403, 747, 791
AfiI	CCNNNNNNNGG	2 cut(s)	509, 631
AflIII	ACRYGT	1 cut(s)	151
AgsI	TTSAA	8 cut(s)	429, 443, 450, 818, 847, 992, 1000, 1012
AhlI	ACTAGT	1 cut(s)	748
AjiI	CACGTC	1 cut(s)	223
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
AluBI	AGCT	6 cut(s)	18, 270, 308, 386, 476, 923
AluI	AGCT	6 cut(s)	18, 270, 308, 386, 476, 923
Alw26I	GTCTC	1 cut(s)	766
AlwI	GGATC	1 cut(s)	251
AlwNI	CAGNNNCTG	2 cut(s)	893, 923
Ama87I	CYCGRG	1 cut(s)	13
AoxI	GGCC	3 cut(s)	99, 802, 958
ApeKI	GCWGC	6 cut(s)	308, 584, 647, 917, 920, 923
AseI	ATTAAT	1 cut(s)	459
AspLEI	GCGC	1 cut(s)	782
AspS9I	GGNCC	2 cut(s)	736, 803
AsuHPI	GGTGA	1 cut(s)	572
AvaI	CYCGRG	1 cut(s)	13
AvaII	GGWCC	1 cut(s)	736
BanI	GGYRCC	1 cut(s)	770
BanII	GRGCYC	1 cut(s)	515
BbrPI	CACGTG	1 cut(s)	152
BbvI	GCAGC	6 cut(s)	295, 596, 634, 910, 929, 932
BccI	CCATC	4 cut(s)	124, 527, 682, 814
BcgI	CGANNNNNNTGC	3 cut(s)	28, 681, 715
BciVI	GTATCC	1 cut(s)	632
BclI	TGATCA	1 cut(s)	672
BcoDI	GTCTC	1 cut(s)	766
BcuI	ACTAGT	1 cut(s)	748
BfaI	CTAG	2 cut(s)	36, 749
BfmI	CTRYAG	2 cut(s)	297, 555
BfuAI	ACCTGC	1 cut(s)	548
BfuI	GTATCC	1 cut(s)	632
BisI	GCNGC	6 cut(s)	309, 585, 648, 918, 921, 924
BlsI	GCNGC	6 cut(s)	310, 586, 649, 919, 922, 925
BmcAI	AGTACT	1 cut(s)	747
Bme18I	GGWCC	1 cut(s)	736
BmeT110I	CYCGRG	1 cut(s)	13
BmgBI	CACGTC	1 cut(s)	223
BmgT120I	GGNCC	2 cut(s)	736, 803
BmiI	GGNNCC	3 cut(s)	501, 738, 772
BmrI	ACTGGG	1 cut(s)	489
BmsI	GCATC	3 cut(s)	320, 701, 859
BmuI	ACTGGG	1 cut(s)	489
BplI	GAGNNNNNCTC	4 cut(s)	746, 778, 859, 891
BpmI	CTGGAG	1 cut(s)	486
Bpu10I	CCTNAGC	2 cut(s)	271, 962
BpuEI	CTTGAG	2 cut(s)	64, 80
BsaAI	YACGTR	1 cut(s)	152
BsaI	GGTCTC	1 cut(s)	766
BsaJI	CCNNGG	3 cut(s)	163, 370, 625
Bsc4I	CCNNNNNNNGG	2 cut(s)	509, 631
Bse1I	ACTGG	3 cut(s)	484, 503, 738
Bse3DI	GCAATG	1 cut(s)	12
BseDI	CCNNGG	3 cut(s)	163, 370, 625
BseGI	GGATG	2 cut(s)	116, 427
BseLI	CCNNNNNNNGG	2 cut(s)	509, 631
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	2 cut(s)	41, 711
BseNI	ACTGG	3 cut(s)	484, 503, 738
BseXI	GCAGC	6 cut(s)	295, 596, 634, 910, 929, 932
BseYI	CCCAGC	1 cut(s)	111
Bsh1236I	CGCG	1 cut(s)	836
BshFI	GGCC	3 cut(s)	101, 804, 960
BshNI	GGYRCC	1 cut(s)	770
BsiHKCI	CYCGRG	1 cut(s)	13
BslI	CCNNNNNNNGG	2 cut(s)	509, 631
BsmAI	GTCTC	1 cut(s)	766
BsnI	GGCC	3 cut(s)	101, 804, 960
Bso31I	GGTCTC	1 cut(s)	766
BsoBI	CYCGRG	1 cut(s)	13
Bsp1286I	GDGCHC	1 cut(s)	515
Bsp143I	GATC	2 cut(s)	256, 672
BspACI	CCGC	2 cut(s)	590, 834
BspANI	GGCC	3 cut(s)	101, 804, 960
BspCNI	CTCAG	2 cut(s)	40, 712
BspFNI	CGCG	1 cut(s)	836
BspLI	GGNNCC	3 cut(s)	501, 738, 772
BspMAI	CTGCAG	2 cut(s)	301, 559
BspMI	ACCTGC	1 cut(s)	548
BspPI	GGATC	1 cut(s)	251
BspQI	GCTCTTC	1 cut(s)	239
BspT107I	GGYRCC	1 cut(s)	770
BspTNI	GGTCTC	1 cut(s)	766
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	3 cut(s)	484, 503, 738
BssECI	CCNNGG	3 cut(s)	163, 370, 625
BssMI	GATC	2 cut(s)	256, 672
BssT1I	CCWWGG	3 cut(s)	163, 370, 625
Bst4CI	ACNGT	3 cut(s)	229, 433, 644
Bst6I	CTCTTC	2 cut(s)	112, 239
BstAPI	GCANNNNNTGC	1 cut(s)	923
BstBAI	YACGTR	1 cut(s)	152
BstC8I	GCNNGC	3 cut(s)	147, 339, 873
BstDEI	CTNAG	4 cut(s)	27, 271, 720, 962
BstENI	CCTNNNNNAGG	1 cut(s)	629
BstF5I	GGATG	2 cut(s)	116, 427
BstFNI	CGCG	1 cut(s)	836
BstHHI	GCGC	1 cut(s)	782
BstKTI	GATC	2 cut(s)	259, 675
BstMAI	GTCTC	1 cut(s)	766
BstMBI	GATC	2 cut(s)	256, 672
BstMWI	GCNNNNNNNGC	5 cut(s)	305, 338, 482, 779, 923
BstSFI	CTRYAG	2 cut(s)	297, 555
BstUI	CGCG	1 cut(s)	836
BstV1I	GCAGC	6 cut(s)	295, 596, 634, 910, 929, 932
BsuI	GTATCC	1 cut(s)	632
BsuRI	GGCC	3 cut(s)	101, 804, 960
BtrI	CACGTC	1 cut(s)	223
BtsCI	GGATG	2 cut(s)	116, 427
BtsIMutI	CAGTG	1 cut(s)	717
BveI	ACCTGC	1 cut(s)	548
Cac8I	GCNNGC	3 cut(s)	147, 339, 873
CaiI	CAGNNNCTG	2 cut(s)	893, 923
CfoI	GCGC	1 cut(s)	782
Cfr13I	GGNCC	2 cut(s)	736, 803
Csp6I	GTAC	3 cut(s)	402, 746, 790
CviAII	CATG	7 cut(s)	380, 604, 652, 670, 676, 865, 956
CviQI	GTAC	3 cut(s)	402, 746, 790
DdeI	CTNAG	4 cut(s)	27, 271, 720, 962
DpnI	GATC	2 cut(s)	258, 674
DpnII	GATC	2 cut(s)	256, 672
DraIII	CACNNNGTG	1 cut(s)	770
Eam1104I	CTCTTC	2 cut(s)	112, 239
EarI	CTCTTC	2 cut(s)	112, 239
Eco130I	CCWWGG	3 cut(s)	163, 370, 625
Eco147I	AGGCCT	1 cut(s)	101
Eco24I	GRGCYC	1 cut(s)	515
Eco31I	GGTCTC	1 cut(s)	766
Eco47I	GGWCC	1 cut(s)	736
Eco72I	CACGTG	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	13
EcoNI	CCTNNNNNAGG	1 cut(s)	629
EcoT14I	CCWWGG	3 cut(s)	163, 370, 625
EcoT38I	GRGCYC	1 cut(s)	515
ErhI	CCWWGG	3 cut(s)	163, 370, 625
FaeI	CATG	7 cut(s)	383, 607, 655, 673, 679, 868, 959
FatI	CATG	7 cut(s)	379, 603, 651, 669, 675, 864, 955
FbaI	TGATCA	1 cut(s)	672
FblI	GTMKAC	1 cut(s)	52
Fnu4HI	GCNGC	6 cut(s)	309, 585, 648, 918, 921, 924
FokI	GGATG	2 cut(s)	103, 434
FriOI	GRGCYC	1 cut(s)	515
Fsp4HI	GCNGC	6 cut(s)	309, 585, 648, 918, 921, 924
FspBI	CTAG	2 cut(s)	36, 749
GlaI	GCGC	1 cut(s)	781
GluI	GCNGC	6 cut(s)	309, 585, 648, 918, 921, 924
GsaI	CCCAGC	1 cut(s)	115
GsuI	CTGGAG	1 cut(s)	486
HaeIII	GGCC	3 cut(s)	101, 804, 960
HhaI	GCGC	1 cut(s)	782
Hin1II	CATG	7 cut(s)	383, 607, 655, 673, 679, 868, 959
Hin6I	GCGC	1 cut(s)	780
HinP1I	GCGC	1 cut(s)	780
HincII	GTYRAC	1 cut(s)	667
HindII	GTYRAC	1 cut(s)	667
HinfI	GANTC	3 cut(s)	31, 814, 890
HphI	GGTGA	1 cut(s)	572
Hpy166II	GTNNAC	2 cut(s)	53, 667
Hpy188I	TCNGA	2 cut(s)	30, 703
Hpy188III	TCNNGA	1 cut(s)	615
Hpy8I	GTNNAC	2 cut(s)	53, 667
Hpy99I	CGWCG	1 cut(s)	971
HpyAV	CCTTC	2 cut(s)	112, 698
HpyCH4III	ACNGT	3 cut(s)	229, 433, 644
HpyCH4IV	ACGT	2 cut(s)	151, 222
HpyCH4V	TGCA	6 cut(s)	278, 299, 311, 557, 917, 926
HpyF10VI	GCNNNNNNNGC	5 cut(s)	305, 338, 482, 779, 923
HpyF3I	CTNAG	4 cut(s)	27, 271, 720, 962
HpySE526I	ACGT	2 cut(s)	151, 222
Hsp92II	CATG	7 cut(s)	383, 607, 655, 673, 679, 868, 959
HspAI	GCGC	1 cut(s)	780
Ksp22I	TGATCA	1 cut(s)	672
Kzo9I	GATC	2 cut(s)	256, 672
LguI	GCTCTTC	1 cut(s)	239
LmnI	GCTCC	3 cut(s)	376, 383, 505
Lsp1109I	GCAGC	6 cut(s)	295, 596, 634, 910, 929, 932
LweI	GCATC	3 cut(s)	320, 701, 859
MaeI	CTAG	2 cut(s)	36, 749
MaeII	ACGT	2 cut(s)	151, 222
MaeIII	GTNAC	5 cut(s)	218, 223, 322, 560, 951
MalI	GATC	2 cut(s)	258, 674
MboI	GATC	2 cut(s)	256, 672
MboII	GAAGA	3 cut(s)	99, 256, 542
MhlI	GDGCHC	1 cut(s)	515
MluCI	AATT	2 cut(s)	140, 174
MmeI	TCCRAC	1 cut(s)	616
MnlI	CCTC	9 cut(s)	22, 36, 90, 301, 490, 625, 748, 861, 964
MseI	TTAA	1 cut(s)	459
MslI	CAYNNNNRTG	1 cut(s)	674
MspA1I	CMGCKG	1 cut(s)	923
MvnI	CGCG	1 cut(s)	836
MwoI	GCNNNNNNNGC	5 cut(s)	305, 338, 482, 779, 923
NdeII	GATC	2 cut(s)	256, 672
NlaIII	CATG	7 cut(s)	383, 607, 655, 673, 679, 868, 959
NlaIV	GGNNCC	3 cut(s)	501, 738, 772
NmuCI	GTSAC	5 cut(s)	218, 223, 322, 560, 951
PaeR7I	CTCGAG	1 cut(s)	13
PaqCI	CACCTGC	1 cut(s)	548
PceI	AGGCCT	1 cut(s)	101
PciSI	GCTCTTC	1 cut(s)	239
PfeI	GAWTC	3 cut(s)	31, 814, 890
PkrI	GCNGC	6 cut(s)	310, 586, 649, 919, 922, 925
PmaCI	CACGTG	1 cut(s)	152
PmlI	CACGTG	1 cut(s)	152
Ppu21I	YACGTR	1 cut(s)	152
PshBI	ATTAAT	1 cut(s)	459
PsiI	TTATAA	1 cut(s)	206
PspCI	CACGTG	1 cut(s)	152
PspFI	CCCAGC	1 cut(s)	111
PspN4I	GGNNCC	3 cut(s)	501, 738, 772
PspPI	GGNCC	2 cut(s)	736, 803
PspXI	VCTCGAGB	1 cut(s)	13
PstI	CTGCAG	2 cut(s)	301, 559
PstNI	CAGNNNCTG	2 cut(s)	893, 923
PvuII	CAGCTG	1 cut(s)	923
RsaI	GTAC	3 cut(s)	403, 747, 791
RsaNI	GTAC	3 cut(s)	402, 746, 790
RseI	CAYNNNNRTG	1 cut(s)	674
SapI	GCTCTTC	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	6 cut(s)	309, 585, 648, 918, 921, 924
Sau3AI	GATC	2 cut(s)	256, 672
Sau96I	GGNCC	2 cut(s)	736, 803
ScaI	AGTACT	1 cut(s)	747
SduI	GDGCHC	1 cut(s)	515
SfaNI	GCATC	3 cut(s)	320, 701, 859
SfcI	CTRYAG	2 cut(s)	297, 555
Sfr274I	CTCGAG	1 cut(s)	13
SinI	GGWCC	1 cut(s)	736
SlaI	CTCGAG	1 cut(s)	13
SmiMI	CAYNNNNRTG	1 cut(s)	674
SmlI	CTYRAG	3 cut(s)	13, 43, 95
SmoI	CTYRAG	3 cut(s)	13, 43, 95
SpeI	ACTAGT	1 cut(s)	748
Sse9I	AATT	2 cut(s)	140, 174
SseBI	AGGCCT	1 cut(s)	101
SsiI	CCGC	2 cut(s)	590, 834
SspI	AATATT	1 cut(s)	546
SspMI	CTAG	2 cut(s)	36, 749
StuI	AGGCCT	1 cut(s)	101
StyI	CCWWGG	3 cut(s)	163, 370, 625
TaaI	ACNGT	3 cut(s)	229, 433, 644
TaiI	ACGT	2 cut(s)	154, 225
TaqI	TCGA	1 cut(s)	14
TasI	AATT	2 cut(s)	140, 174
TatI	WGTACW	3 cut(s)	401, 745, 789
TfiI	GAWTC	3 cut(s)	31, 814, 890
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TscAI	CASTG	1 cut(s)	724
TseFI	GTSAC	5 cut(s)	218, 223, 322, 560, 951
TseI	GCWGC	6 cut(s)	308, 584, 647, 917, 920, 923
Tsp45I	GTSAC	5 cut(s)	218, 223, 322, 560, 951
TspDTI	ATGAA	5 cut(s)	117, 153, 591, 668, 945
TspRI	CASTG	1 cut(s)	724
VpaK11BI	GGWCC	1 cut(s)	736
VspI	ATTAAT	1 cut(s)	459
XagI	CCTNNNNNAGG	1 cut(s)	629
XhoI	CTCGAG	1 cut(s)	13
XmiI	GTMKAC	1 cut(s)	52
XspI	CTAG	2 cut(s)	36, 749
ZrmI	AGTACT	1 cut(s)	747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.