Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000231.1

Orthogroup ID

OG0006500

Physical Location & Seq

Genomic Coordinates Reverse (-)

86685 .. 87690

Gene Structure 1006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000231.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atggggaagtcaagattttaccttggagaggttggatacggtgctgccatgaaacttgttgtcaacatgatcatgggaagtatgatggcatcattctcggaagggttggttctcactgagaaaataggactggacccaaaagtactagttgaggtggtctcacagggtgccattagcgcaccaatgtactcactcaaaggcccatcaatgattcaatctctctaccctaccgcgtttcccttgaagcatcaacaaaaggacatgaggcttgctctgggattagcagaatctgtttcccaatctacgccgattgcagcagctgcaaatgaactatacaaggtagcaaagtcacatggccttagcgacgaggacttttcagcagtcattgaagcattgaaaccgaagttgaagcactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016491 GO:0016614 GO:0016616 GO:0030267 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00630 ko00650 ko01100 ko01120 ko01200 map00630 map00650 map01100 map01120 map01200

Pfam Domains

Protein Families

NAD_binding_11 NAD_binding_2

Protein Analysis

138

Amino Acids

14.79

Weight (kDa)

8.8

Isoelectric Point (pI)

27.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17650 AT1G17650
fragaria_vesca	FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660
malus_domestica	MD09G1191900.v1.1
prunus_persica	Prupe.3G048100_v2.0.a1 Prupe.3G048100_v2.0.a1
pyrus_communis	pycom09g10840
rosa_chinensis	RchiOBHm_Chr2g0143571
rosa_laevigata	RLG00000020047
rosa_multiflora	Rmu_co8457181.1_g000001 Rmu_sc0005308.1_g000001 Rmu_ssc0000231.1_g000008 Rmu_ssc0000231.1_g000012
rosa_roxburghii	Rroxscaffold_2G00101650
rosa_rugosa	Rorug02G0383900
rosa_samantha	Rh2AG435800 Rh2BG443400 Rh2CG421900 Rh2DG453800
rosa_wichuraiana	Rw2G035510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	167
AccII	CGCG	1 cut(s)	233
AciI	CCGC	1 cut(s)	231
AdeI	CACNNNGTG	1 cut(s)	167
AfaI	GTAC	2 cut(s)	144, 188
AfiI	CCNNNNNNNGG	1 cut(s)	28
AgsI	TTSAA	5 cut(s)	215, 244, 389, 397, 409
AhlI	ACTAGT	1 cut(s)	145
AluBI	AGCT	1 cut(s)	320
AluI	AGCT	1 cut(s)	320
Alw26I	GTCTC	1 cut(s)	163
AlwNI	CAGNNNCTG	2 cut(s)	290, 320
AoxI	GGCC	2 cut(s)	199, 355
ApeKI	GCWGC	4 cut(s)	44, 314, 317, 320
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	2 cut(s)	133, 200
AvaII	GGWCC	1 cut(s)	133
BanI	GGYRCC	1 cut(s)	167
BbvI	GCAGC	4 cut(s)	31, 307, 326, 329
BccI	CCATC	2 cut(s)	79, 211
BcgI	CGANNNNNNTGC	2 cut(s)	78, 112
BciVI	GTATCC	1 cut(s)	29
BclI	TGATCA	1 cut(s)	69
BcoDI	GTCTC	1 cut(s)	163
BcuI	ACTAGT	1 cut(s)	145
BfaI	CTAG	2 cut(s)	146, 415
BfuI	GTATCC	1 cut(s)	29
BisI	GCNGC	4 cut(s)	45, 315, 318, 321
BlsI	GCNGC	4 cut(s)	46, 316, 319, 322
BmcAI	AGTACT	1 cut(s)	144
Bme18I	GGWCC	1 cut(s)	133
BmgT120I	GGNCC	2 cut(s)	133, 200
BmiI	GGNNCC	2 cut(s)	135, 169
BmsI	GCATC	2 cut(s)	98, 256
BplI	GAGNNNNNCTC	4 cut(s)	143, 175, 256, 288
Bpu10I	CCTNAGC	1 cut(s)	359
BsaI	GGTCTC	1 cut(s)	163
BsaJI	CCNNGG	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	22
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	135
BseXI	GCAGC	4 cut(s)	31, 307, 326, 329
Bsh1236I	CGCG	1 cut(s)	233
BshFI	GGCC	2 cut(s)	201, 357
BshNI	GGYRCC	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmAI	GTCTC	1 cut(s)	163
BsnI	GGCC	2 cut(s)	201, 357
Bso31I	GGTCTC	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	69
BspACI	CCGC	1 cut(s)	231
BspANI	GGCC	2 cut(s)	201, 357
BspCNI	CTCAG	1 cut(s)	109
BspFNI	CGCG	1 cut(s)	233
BspLI	GGNNCC	2 cut(s)	135, 169
BspT107I	GGYRCC	1 cut(s)	167
BspTNI	GGTCTC	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	135
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	1 cut(s)	69
BssT1I	CCWWGG	1 cut(s)	22
Bst4CI	ACNGT	1 cut(s)	41
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	2 cut(s)	117, 359
BstENI	CCTNNNNNAGG	1 cut(s)	26
BstFNI	CGCG	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	1 cut(s)	72
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	69
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 320
BstUI	CGCG	1 cut(s)	233
BstV1I	GCAGC	4 cut(s)	31, 307, 326, 329
BsuI	GTATCC	1 cut(s)	29
BsuRI	GGCC	2 cut(s)	201, 357
BtsIMutI	CAGTG	1 cut(s)	114
Cac8I	GCNNGC	1 cut(s)	270
CaiI	CAGNNNCTG	2 cut(s)	290, 320
CfoI	GCGC	1 cut(s)	179
Cfr13I	GGNCC	2 cut(s)	133, 200
Csp6I	GTAC	2 cut(s)	143, 187
CviAII	CATG	5 cut(s)	49, 67, 73, 262, 353
CviJI	RGCY	4 cut(s)	201, 268, 320, 357
CviKI_1	RGCY	4 cut(s)	201, 268, 320, 357
CviQI	GTAC	2 cut(s)	143, 187
DdeI	CTNAG	2 cut(s)	117, 359
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
DraIII	CACNNNGTG	1 cut(s)	167
Eco130I	CCWWGG	1 cut(s)	22
Eco31I	GGTCTC	1 cut(s)	163
Eco47I	GGWCC	1 cut(s)	133
EcoNI	CCTNNNNNAGG	1 cut(s)	26
EcoT14I	CCWWGG	1 cut(s)	22
ErhI	CCWWGG	1 cut(s)	22
FaeI	CATG	5 cut(s)	52, 70, 76, 265, 356
FaiI	YATR	7 cut(s)	50, 68, 74, 83, 263, 334, 354
FatI	CATG	5 cut(s)	48, 66, 72, 261, 352
FbaI	TGATCA	1 cut(s)	69
Fnu4HI	GCNGC	4 cut(s)	45, 315, 318, 321
Fsp4HI	GCNGC	4 cut(s)	45, 315, 318, 321
FspBI	CTAG	2 cut(s)	146, 415
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	4 cut(s)	45, 315, 318, 321
HaeIII	GGCC	2 cut(s)	201, 357
HhaI	GCGC	1 cut(s)	179
Hin1II	CATG	5 cut(s)	52, 70, 76, 265, 356
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	2 cut(s)	211, 287
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	1 cut(s)	100
Hpy188III	TCNNGA	1 cut(s)	12
Hpy8I	GTNNAC	1 cut(s)	64
Hpy99I	CGWCG	1 cut(s)	368
HpyAV	CCTTC	1 cut(s)	95
HpyCH4III	ACNGT	1 cut(s)	41
HpyCH4V	TGCA	2 cut(s)	314, 323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 320
HpyF3I	CTNAG	2 cut(s)	117, 359
Hsp92II	CATG	5 cut(s)	52, 70, 76, 265, 356
HspAI	GCGC	1 cut(s)	177
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	1 cut(s)	69
LpnPI	CCDG	3 cut(s)	116, 149, 260
Lsp1109I	GCAGC	4 cut(s)	31, 307, 326, 329
LweI	GCATC	2 cut(s)	98, 256
MaeI	CTAG	2 cut(s)	146, 415
MaeIII	GTNAC	1 cut(s)	348
MalI	GATC	1 cut(s)	71
MboI	GATC	1 cut(s)	69
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	4 cut(s)	22, 145, 258, 361
MslI	CAYNNNNRTG	1 cut(s)	71
MspA1I	CMGCKG	1 cut(s)	320
MvnI	CGCG	1 cut(s)	233
MwoI	GCNNNNNNNGC	2 cut(s)	176, 320
NdeII	GATC	1 cut(s)	69
NlaIII	CATG	5 cut(s)	52, 70, 76, 265, 356
NlaIV	GGNNCC	2 cut(s)	135, 169
NmuCI	GTSAC	1 cut(s)	348
PfeI	GAWTC	2 cut(s)	211, 287
PkrI	GCNGC	4 cut(s)	46, 316, 319, 322
PspN4I	GGNNCC	2 cut(s)	135, 169
PspPI	GGNCC	2 cut(s)	133, 200
PstNI	CAGNNNCTG	2 cut(s)	290, 320
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	2 cut(s)	144, 188
RsaNI	GTAC	2 cut(s)	143, 187
RseI	CAYNNNNRTG	1 cut(s)	71
SatI	GCNGC	4 cut(s)	45, 315, 318, 321
Sau3AI	GATC	1 cut(s)	69
Sau96I	GGNCC	2 cut(s)	133, 200
ScaI	AGTACT	1 cut(s)	144
SetI	ASST	5 cut(s)	24, 33, 156, 322, 342
SfaNI	GCATC	2 cut(s)	98, 256
SinI	GGWCC	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	71
SpeI	ACTAGT	1 cut(s)	145
SsiI	CCGC	1 cut(s)	231
SspMI	CTAG	2 cut(s)	146, 415
StyI	CCWWGG	1 cut(s)	22
TaaI	ACNGT	1 cut(s)	41
TatI	WGTACW	2 cut(s)	142, 186
TfiI	GAWTC	2 cut(s)	211, 287
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	1 cut(s)	348
TseI	GCWGC	4 cut(s)	44, 314, 317, 320
Tsp45I	GTSAC	1 cut(s)	348
TspDTI	ATGAA	2 cut(s)	65, 342
TspRI	CASTG	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	133
XagI	CCTNNNNNAGG	1 cut(s)	26
XspI	CTAG	2 cut(s)	146, 415
ZrmI	AGTACT	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.