AT1G17720

phosphatase 2A 55 kDa regulatory subunit B

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
6093185 .. 6098443
5259 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G17720.2

Sequence Viewer

Length: 1506 bp
ATGAACGGTGGTGACGATGCCGCTACTAGTGGTCCTCCTCCGTCTTTAGAGTGGAGATTCTCTCAGGTCTTCGGTGAGCGAACCGCCGGAGAAGAAGTTCAGGAAGTTGACATCATTTCAGCCATCGAATTTGATAAAAGTGGAGACCATCTCGCAACTGGTGACCGTGGGGGCCGAGTAGTTCTTTTTGAAAGGACAGATACTAAAGATCATGGAGGGTCCAGGAAGGATCTTGAGCAGACGGATTACCCAGTTAGGCATCCTGAGTTTCGATATAAAACAGAATTTCAGAGTCATGAACCAGAGTTTGACTATCTCAAGAGTTTGGAGATAGAGGAGAAAATCAACAAAATCAGATGGTGTCAGCCAGCTAATGGTGCATTGTTTCTGCTTTCTACAAACGATAAAACCATCAAATATTGGAAGGTACAAGAGAAGAAGATCAAGAAAATTAGTGAAATGAATATTGATCCGTCAGAAAGTTCAAATATCCCTCCTCAATTAGTTACTAATGGATTACCTGCTGATAAAGGGCATGACTACCTGAGCAAGGACTTTTCTTTCCCGCCAGGAGGCATTCCATCTCTGCGTTTGCCTGTGGTAGTTACCAGCCAGGAGACTAACCTTGTGGCTAGATGCCGAAGAGTGTATGCCCATGCTCATGATTACCATATTAATTCAATCTCCAATAGCAGTGACGGAGAAACCTTTATTTCGGCTGATGATCTGCGAGTAAATCTCTGGAATTTGGAAATTAGCAACCAGAGTTTCAATATTGTTGATGTTAAGCCCACAAACATGGAGGACTTAACTGAGGTTATTACATCAGCTGAGTTTCATCCTATCCATTGTAATATGCTCGCATATAGTAGTTCAAAAGGCTCCATTCGTTTGATTGATATGCGTCAATCAGCTCTGTGTGATTCTCATACGAAATTATTTGAAGAACCGGAAGCACCTGGTTCAAGATCATTTTTCACAGAGATAATTGCCTCAATTTCAGATATTAAATTCTCAAAGGATGGGAGATACATACTTAGTCGCGATTACATGACGCTCAAGCTGTGGGACATAAACATGGATTCTGGTCCGGTCGCATCTTACCAGGTTCATGAACATCTGAGACCCAGGCTATGCGATCTATATGAAAATGACTCCATCTTTGATAAATTTGAGTGTTGTCTGAGTGGCGATGGATTGAGGGTAGCAACAGGTTCTTACAGCAATCTATTCCGCGTATTTGGAGCGTCTCAAGGAAGTACTGAAGCTGCGACTTTGGAAGCTAGCAAAAACCCGATGAGGAGGCAAATCCAGACACCTGCAAGACCATCCAGATCTATAGGCAGTATGACACGCGTGGTTAGACGAGGATCAGAGAGTCCCGGAACAGAGGCAAATGGGAACGCCTACGATTTCACAACAAAGTTGCTGCATATGGCTTGGCACCCAACAGAGAACTCAATTGCTTGTGCAGCAGCAAACAGCTTGTACATGTACTATGCATGA

Protein Analysis

501

Amino Acids

56.27

Weight (kDa)

5.52

Isoelectric Point (pI)

51.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1327
Acc36I ACCTGC 2 cut(s) 529, 1327
AccB1I GGYRCC 1 cut(s) 1443
AccB7I CCANNNNNTGG 1 cut(s) 374
AccII CGCG 3 cut(s) 1044, 1236, 1356
AciI CCGC 4 cut(s) 21, 84, 566, 1234
AclWI GGATC 3 cut(s) 237, 464, 1378
AcsI RAATTY 5 cut(s) 128, 284, 745, 1010, 1169
AcuI CTGAAG 1 cut(s) 1284
AfaI GTAC 4 cut(s) 429, 1261, 1490, 1496
AfiI CCNNNNNNNGG 3 cut(s) 374, 550, 572
AflIII ACRYGT 2 cut(s) 1354, 1491
AgsI TTSAA 7 cut(s) 191, 486, 681, 772, 876, 944, 966
AhlI ACTAGT 1 cut(s) 26
AjnI CCWGG 6 cut(s) 221, 568, 612, 958, 1104, 1127
AloI GAACNNNNNNTCC 2 cut(s) 81, 113
AluBI AGCT 7 cut(s) 371, 830, 914, 1063, 1268, 1283, 1485
AluI AGCT 7 cut(s) 371, 830, 914, 1063, 1268, 1283, 1485
Alw26I GTCTC 4 cut(s) 138, 611, 1117, 1254
AlwI GGATC 3 cut(s) 237, 464, 1378
AoxI GGCC 1 cut(s) 172
ApeKI GCWGC 4 cut(s) 1268, 1429, 1472, 1475
ApoI RAATTY 5 cut(s) 128, 284, 745, 1010, 1169
ArsI GACNNNNNNTTYG 2 cut(s) 1145, 1177
AseI ATTAAT 1 cut(s) 675
Asp700I GAANNNNTTC 1 cut(s) 96
AspS9I GGNCC 4 cut(s) 32, 172, 219, 1088
AsuC2I CCSGG 1 cut(s) 1383
AsuHPI GGTGA 3 cut(s) 23, 86, 173
AsuNHI GCTAGC 1 cut(s) 1283
AvaII GGWCC 3 cut(s) 32, 219, 1088
BanI GGYRCC 1 cut(s) 1443
BbsI GAAGAC 1 cut(s) 61
BbvI GCAGC 4 cut(s) 1255, 1416, 1484, 1487
BccI CCATC 9 cut(s) 131, 156, 351, 419, 589, 1016, 1166, 1187, 1336
BciT130I CCWGG 6 cut(s) 223, 570, 614, 960, 1106, 1129
BcnI CCSGG 1 cut(s) 1383
BcoDI GTCTC 4 cut(s) 138, 611, 1117, 1254
BcuI ACTAGT 1 cut(s) 26
BfaI CTAG 3 cut(s) 27, 633, 1284
BfmI CTRYAG 1 cut(s) 1338
BfuAI ACCTGC 2 cut(s) 529, 1327
BglII AGATCT 1 cut(s) 1334
BisI GCNGC 5 cut(s) 21, 1269, 1430, 1473, 1476
BlsI GCNGC 5 cut(s) 22, 1270, 1431, 1474, 1477
BmcAI AGTACT 1 cut(s) 1261
Bme1390I CCNGG 7 cut(s) 223, 570, 614, 960, 1106, 1129, 1383
Bme18I GGWCC 3 cut(s) 32, 219, 1088
BmgT120I GGNCC 4 cut(s) 32, 172, 219, 1088
BmiI GGNNCC 4 cut(s) 173, 220, 883, 1445
BmrFI CCNGG 7 cut(s) 223, 570, 614, 960, 1106, 1129, 1383
BmrI ACTGGG 1 cut(s) 245
BmsI GCATC 4 cut(s) 7, 268, 626, 1106
BmtI GCTAGC 1 cut(s) 1287
BmuI ACTGGG 1 cut(s) 245
BpiI GAAGAC 1 cut(s) 61
BplI GAGNNNNNCTC 6 cut(s) 46, 78, 135, 167, 723, 755
Bpu10I CCTNAGC 1 cut(s) 545
BpuEI CTTGAG 4 cut(s) 254, 302, 1043, 1236
BpuMI CCSGG 1 cut(s) 1383
BsaI GGTCTC 2 cut(s) 138, 1117
BsaJI CCNNGG 2 cut(s) 166, 1127
BsaWI WCCGGW 2 cut(s) 949, 1090
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bsc4I CCNNNNNNNGG 3 cut(s) 374, 550, 572
Bse1I ACTGG 2 cut(s) 163, 251
BseBI CCWGG 6 cut(s) 223, 570, 614, 960, 1106, 1129
BseDI CCNNGG 2 cut(s) 166, 1127
BseGI GGATG 4 cut(s) 259, 838, 1027, 1328
BseLI CCNNNNNNNGG 3 cut(s) 374, 550, 572
BseMII CTCAG 7 cut(s) 77, 255, 536, 804, 822, 1112, 1175
BseNI ACTGG 2 cut(s) 163, 251
BseRI GAGGAG 4 cut(s) 27, 350, 486, 1315
BseXI GCAGC 4 cut(s) 1255, 1416, 1484, 1487
BsgI GTGCAG 1 cut(s) 1491
Bsh1236I CGCG 3 cut(s) 1044, 1236, 1356
Bsh1285I CGRYCG 1 cut(s) 1095
BshFI GGCC 1 cut(s) 174
BshNI GGYRCC 1 cut(s) 1443
BsiEI CGRYCG 1 cut(s) 1095
BsiSI CCGG 4 cut(s) 87, 950, 1091, 1383
BslFI GGGAC 2 cut(s) 1082, 1365
BslI CCNNNNNNNGG 3 cut(s) 374, 550, 572
BsmAI GTCTC 4 cut(s) 138, 611, 1117, 1254
BsmBI CGTCTC 1 cut(s) 1254
BsmFI GGGAC 2 cut(s) 1082, 1365
BsmI GAATGC 1 cut(s) 576
BsnI GGCC 1 cut(s) 174
Bso31I GGTCTC 2 cut(s) 138, 1117
Bsp1407I TGTACA 1 cut(s) 1488
Bsp143I GATC 9 cut(s) 208, 229, 441, 469, 724, 968, 1138, 1334, 1370
Bsp68I TCGCGA 1 cut(s) 1044
BspACI CCGC 4 cut(s) 21, 84, 566, 1234
BspANI GGCC 1 cut(s) 174
BspCNI CTCAG 7 cut(s) 76, 256, 537, 805, 823, 1113, 1176
BspFNI CGCG 3 cut(s) 1044, 1236, 1356
BspHI TCATGA 3 cut(s) 295, 661, 1111
BspLI GGNNCC 4 cut(s) 173, 220, 883, 1445
BspMI ACCTGC 2 cut(s) 529, 1327
BspOI GCTAGC 1 cut(s) 1287
BspPI GGATC 3 cut(s) 237, 464, 1378
BspT107I GGYRCC 1 cut(s) 1443
BspTNI GGTCTC 2 cut(s) 138, 1117
BsrGI TGTACA 1 cut(s) 1488
BsrI ACTGG 2 cut(s) 163, 251
BssECI CCNNGG 2 cut(s) 166, 1127
BssMI GATC 9 cut(s) 208, 229, 441, 469, 724, 968, 1138, 1334, 1370
Bst2UI CCWGG 6 cut(s) 223, 570, 614, 960, 1106, 1129
Bst4CI ACNGT 2 cut(s) 8, 167
Bst6I CTCTTC 1 cut(s) 637
BstAUI TGTACA 1 cut(s) 1488
BstC8I GCNNGC 3 cut(s) 369, 861, 1285
BstDEI CTNAG 8 cut(s) 63, 264, 545, 813, 831, 1037, 1121, 1184
BstDSI CCRYGG 1 cut(s) 166
BstEII GGTNACC 1 cut(s) 161
BstENI CCTNNNNNAGG 1 cut(s) 548
BstF5I GGATG 4 cut(s) 259, 838, 1027, 1328
BstFNI CGCG 3 cut(s) 1044, 1236, 1356
BstKTI GATC 9 cut(s) 211, 232, 444, 472, 727, 971, 1141, 1337, 1373
BstMAI GTCTC 4 cut(s) 138, 611, 1117, 1254
BstMBI GATC 9 cut(s) 208, 229, 441, 469, 724, 968, 1138, 1334, 1370
BstMCI CGRYCG 1 cut(s) 1095
BstMWI GCNNNNNNNGC 2 cut(s) 377, 1472
BstNI CCWGG 6 cut(s) 223, 570, 614, 960, 1106, 1129
BstNSI RCATGY 1 cut(s) 1495
BstPI GGTNACC 1 cut(s) 161
BstSCI CCNGG 7 cut(s) 221, 568, 612, 958, 1104, 1127, 1381
BstSFI CTRYAG 1 cut(s) 1338
BstUI CGCG 3 cut(s) 1044, 1236, 1356
BstV1I GCAGC 4 cut(s) 1255, 1416, 1484, 1487
BstV2I GAAGAC 1 cut(s) 61
BstX2I RGATCY 2 cut(s) 229, 1334
BstXI CCANNNNNNTGG 1 cut(s) 799
BstYI RGATCY 2 cut(s) 229, 1334
BsuRI GGCC 1 cut(s) 174
BtgI CCRYGG 1 cut(s) 166
BtgZI GCGATG 1 cut(s) 1206
BtsCI GGATG 4 cut(s) 259, 838, 1027, 1328
BtsI GCAGTG 1 cut(s) 700
BtsIMutI CAGTG 1 cut(s) 700
BtuMI TCGCGA 1 cut(s) 1044
BveI ACCTGC 2 cut(s) 529, 1327
Cac8I GCNNGC 3 cut(s) 369, 861, 1285
CciI TCATGA 3 cut(s) 295, 661, 1111
Cfr13I GGNCC 4 cut(s) 32, 172, 219, 1088
CseI GACGC 3 cut(s) 893, 1063, 1236
CsiI ACCWGGT 2 cut(s) 958, 1104
Csp6I GTAC 4 cut(s) 428, 1260, 1489, 1495
CviQI GTAC 4 cut(s) 428, 1260, 1489, 1495
DdeI CTNAG 8 cut(s) 63, 264, 545, 813, 831, 1037, 1121, 1184
DpnI GATC 9 cut(s) 210, 231, 443, 471, 726, 970, 1140, 1336, 1372
DpnII GATC 9 cut(s) 208, 229, 441, 469, 724, 968, 1138, 1334, 1370
Eam1104I CTCTTC 1 cut(s) 637
EarI CTCTTC 1 cut(s) 637
Eco31I GGTCTC 2 cut(s) 138, 1117
Eco47I GGWCC 3 cut(s) 32, 219, 1088
Eco57I CTGAAG 1 cut(s) 1284
Eco91I GGTNACC 1 cut(s) 161
EcoNI CCTNNNNNAGG 1 cut(s) 548
EcoO65I GGTNACC 1 cut(s) 161
EcoRII CCWGG 6 cut(s) 221, 568, 612, 958, 1104, 1127
EcoT22I ATGCAT 1 cut(s) 1504
Esp3I CGTCTC 1 cut(s) 1254
FaqI GGGAC 2 cut(s) 1082, 1365
FauI CCCGC 1 cut(s) 573
FauNDI CATATG 1 cut(s) 1434
Fnu4HI GCNGC 5 cut(s) 21, 1269, 1430, 1473, 1476
FokI GGATG 4 cut(s) 246, 825, 1034, 1315
Fsp4HI GCNGC 5 cut(s) 21, 1269, 1430, 1473, 1476
FspBI CTAG 3 cut(s) 27, 633, 1284
GluI GCNGC 5 cut(s) 21, 1269, 1430, 1473, 1476
HaeIII GGCC 1 cut(s) 174
HapII CCGG 4 cut(s) 87, 950, 1091, 1383
HgaI GACGC 3 cut(s) 893, 1063, 1236
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 6 cut(s) 57, 292, 923, 1082, 1154, 1378
HpaII CCGG 4 cut(s) 87, 950, 1091, 1383
HphI GGTGA 3 cut(s) 23, 86, 173
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 7 cut(s) 291, 356, 478, 1003, 1122, 1185, 1375
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 2 cut(s) 220, 418
HpyCH4III ACNGT 2 cut(s) 8, 167
HpyCH4V TGCA 5 cut(s) 380, 1322, 1432, 1472, 1502
HpyF10VI GCNNNNNNNGC 2 cut(s) 377, 1472
HpyF3I CTNAG 8 cut(s) 63, 264, 545, 813, 831, 1037, 1121, 1184
Kzo9I GATC 9 cut(s) 208, 229, 441, 469, 724, 968, 1138, 1334, 1370
LmnI GCTCC 2 cut(s) 887, 1244
Lsp1109I GCAGC 4 cut(s) 1255, 1416, 1484, 1487
LweI GCATC 4 cut(s) 7, 268, 626, 1106
MabI ACCWGGT 2 cut(s) 958, 1104
MaeI CTAG 3 cut(s) 27, 633, 1284
MaeIII GTNAC 5 cut(s) 11, 161, 505, 604, 695
MalI GATC 9 cut(s) 210, 231, 443, 471, 726, 970, 1140, 1336, 1372
MboI GATC 9 cut(s) 208, 229, 441, 469, 724, 968, 1138, 1334, 1370
MboII GAAGA 6 cut(s) 61, 104, 448, 451, 654, 956
MfeI CAATTG 1 cut(s) 1461
MflI RGATCY 2 cut(s) 229, 1334
MluI ACGCGT 1 cut(s) 1354
MlyI GAGTC 3 cut(s) 301, 1148, 1387
Mph1103I ATGCAT 1 cut(s) 1504
MroXI GAANNNNTTC 1 cut(s) 96
MseI TTAA 4 cut(s) 675, 786, 809, 1008
MslI CAYNNNNRTG 3 cut(s) 660, 797, 1076
MspA1I CMGCKG 1 cut(s) 830
MspI CCGG 4 cut(s) 87, 950, 1091, 1383
MspR9I CCNGG 7 cut(s) 223, 570, 614, 960, 1106, 1129, 1383
MunI CAATTG 1 cut(s) 1461
Mva1269I GAATGC 1 cut(s) 576
MvaI CCWGG 6 cut(s) 223, 570, 614, 960, 1106, 1129
MvnI CGCG 3 cut(s) 1044, 1236, 1356
MwoI GCNNNNNNNGC 2 cut(s) 377, 1472
NciI CCSGG 1 cut(s) 1383
NdeI CATATG 1 cut(s) 1434
NdeII GATC 9 cut(s) 208, 229, 441, 469, 724, 968, 1138, 1334, 1370
NheI GCTAGC 1 cut(s) 1283
NlaIV GGNNCC 4 cut(s) 173, 220, 883, 1445
NmeAIII GCCGAG 1 cut(s) 200
NmuCI GTSAC 3 cut(s) 11, 161, 695
NruI TCGCGA 1 cut(s) 1044
NsiI ATGCAT 1 cut(s) 1504
NspI RCATGY 1 cut(s) 1495
PagI TCATGA 3 cut(s) 295, 661, 1111
PaqCI CACCTGC 1 cut(s) 1327
PciI ACATGT 1 cut(s) 1491
PcsI WCGNNNNNNNCGW 1 cut(s) 12
PctI GAATGC 1 cut(s) 576
PdmI GAANNNNTTC 1 cut(s) 96
PfeI GAWTC 3 cut(s) 57, 923, 1082
PflMI CCANNNNNTGG 1 cut(s) 374
PfoI TCCNGGA 2 cut(s) 221, 1381
PkrI GCNGC 5 cut(s) 22, 1270, 1431, 1474, 1477
PleI GAGTC 3 cut(s) 300, 1148, 1386
PpsI GAGTC 3 cut(s) 300, 1148, 1386
PscI ACATGT 1 cut(s) 1491
PshBI ATTAAT 1 cut(s) 675
Psp6I CCWGG 6 cut(s) 221, 568, 612, 958, 1104, 1127
PspEI GGTNACC 1 cut(s) 161
PspGI CCWGG 6 cut(s) 221, 568, 612, 958, 1104, 1127
PspN4I GGNNCC 4 cut(s) 173, 220, 883, 1445
PspPI GGNCC 4 cut(s) 32, 172, 219, 1088
PsuI RGATCY 2 cut(s) 229, 1334
PvuII CAGCTG 1 cut(s) 830
RruI TCGCGA 1 cut(s) 1044
RsaI GTAC 4 cut(s) 429, 1261, 1490, 1496
RsaNI GTAC 4 cut(s) 428, 1260, 1489, 1495
RseI CAYNNNNRTG 3 cut(s) 660, 797, 1076
SaqAI TTAA 4 cut(s) 675, 786, 809, 1008
SatI GCNGC 5 cut(s) 21, 1269, 1430, 1473, 1476
Sau3AI GATC 9 cut(s) 208, 229, 441, 469, 724, 968, 1138, 1334, 1370
Sau96I GGNCC 4 cut(s) 32, 172, 219, 1088
ScaI AGTACT 1 cut(s) 1261
SchI GAGTC 3 cut(s) 301, 1148, 1387
ScrFI CCNGG 7 cut(s) 223, 570, 614, 960, 1106, 1129, 1383
SexAI ACCWGGT 2 cut(s) 958, 1104
SfaNI GCATC 4 cut(s) 7, 268, 626, 1106
SfcI CTRYAG 1 cut(s) 1338
SinI GGWCC 3 cut(s) 32, 219, 1088
SmiMI CAYNNNNRTG 3 cut(s) 660, 797, 1076
SmlI CTYRAG 4 cut(s) 233, 317, 1058, 1251
SmoI CTYRAG 4 cut(s) 233, 317, 1058, 1251
SpeI ACTAGT 1 cut(s) 26
SsiI CCGC 4 cut(s) 21, 84, 566, 1234
SspI AATATT 3 cut(s) 419, 466, 775
SspMI CTAG 3 cut(s) 27, 633, 1284
StyD4I CCNGG 7 cut(s) 221, 568, 612, 958, 1104, 1127, 1381
TaaI ACNGT 2 cut(s) 8, 167
TaqI TCGA 2 cut(s) 126, 271
TatI WGTACW 3 cut(s) 1259, 1488, 1494
TauI GCSGC 1 cut(s) 23
TfiI GAWTC 3 cut(s) 57, 923, 1082
Tru1I TTAA 4 cut(s) 675, 786, 809, 1008
Tru9I TTAA 4 cut(s) 675, 786, 809, 1008
TscAI CASTG 1 cut(s) 700
TseFI GTSAC 3 cut(s) 11, 161, 695
TseI GCWGC 4 cut(s) 1268, 1429, 1472, 1475
Tsp45I GTSAC 3 cut(s) 11, 161, 695
TspDTI ATGAA 7 cut(s) 17, 312, 476, 827, 1100, 1128, 1161
TspGWI ACGGA 4 cut(s) 30, 257, 462, 714
TspRI CASTG 1 cut(s) 700
Van91I CCANNNNNTGG 1 cut(s) 374
VpaK11BI GGWCC 3 cut(s) 32, 219, 1088
VspI ATTAAT 1 cut(s) 675
XagI CCTNNNNNAGG 1 cut(s) 548
XapI RAATTY 5 cut(s) 128, 284, 745, 1010, 1169
XceI RCATGY 1 cut(s) 1495
XcmI CCANNNNNNNNNTGG 1 cut(s) 155
XmnI GAANNNNTTC 1 cut(s) 96
XspI CTAG 3 cut(s) 27, 633, 1284
ZrmI AGTACT 1 cut(s) 1261
Zsp2I ATGCAT 1 cut(s) 1504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.