Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001642

Physical Location & Seq

Genomic Coordinates Forward (+)

52768529 .. 52774853

Gene Structure 6325 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0381900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3591 bp

ATGGAGCCGGACGTGAGCATCGAAACCAGCTCCATGATCCGCGTGGCGGTCCTCCCCATTGGCCACGTGCCCCCGGTCCTCCTGCGCGACTACCACTCCATGCTGCTCCGCCACCAGTCGATCCCTCTCTCCGCCGTCAGCTCCTTCTACACCGAGCACCAGAAGTCGCCCTTCGCTCACCAGCCCTGGGACTCCGGCAGCCTCCGCTTCAAGTTCGTCCTCGGCGGCGCCCCTCCCAGCCCCTGGGAGGACTTCCAGTCCAACCGCAAGACCCTTGCCGTCATCGGAATCTGCCACTGTCCTTCCTCCCCGGATCTCGGCTCCGTCATGGATCAATTCGATTCCGTCTGTAGAGCCTACCCTGCCGCACTCGTCGAACGCTGCTTTGCCTTCTGCCCCGCCGATTCTCAGTTGGAGGATGGGAGTAAGAAAGGGTGGAACCTGATGCTGTTCCCACCCGCGGATCGGGCCACACAGGAGTTTCACTTGCAAACGATGATGCAAGACATAGCGGCCTCATTGCTAATGGAGTTTGAGAAATGGGTGCTTAAGGCTGAGCCTGCGGGGACTATTGTCAAGACGCCTTTGGATTCTCAAGCTACTCTCAACTCAGAGGAGGTTATAAAGGCGAAGAAACGGAGGCTTGGGCGTGCACAGAAGACTATGGGTGATTATTGCTTGTTGGCAGGATCACCGGTTGATGCCAATCTTCATTACTCTACTGCACTGGAACTTGCTAGGTTGACCGGAGATTTTTTTTGGTATGCTGGTGCATTGGAGGGAAGCGTTTGTGCATTACTGATTGATCGAATGGGCCAAAAGGATACAGCCGTGGAAGAGGAAGTTAGATATCGGTATAGTAGTGTCATTTTGCACTACAGGAAGTCGTTCATACAAGAGAATGCTCAGAGAGTTTCACCCTTAACATTTGAACTTGAGGCTACTTTGAAATTGGCAAGGTTTCTTTGCAGACGTGAGCTGGCTAGGGAGGTAGTGGAGCTACTAACAAATGCAGCAGATGGTGCAAAATCTCTGATTGATGCCAGTGATAGACTTGTGCTTTATGTTGAAATAGCTCGTTTATATGGAACTCTCGGTTATCAGCGAAAAGCTGCCTTTTTCTCAAGGCAGGTAGCTCAGTTATATTTGCAACAAGATAATAGACTGGCTGCCATTAGTGCAATGCAAGTTCTTGCAATGACCACAAAAGCATATCGTGTTCAGAGTAAAGCTTCAACCTTGGAAGATTCTGTTCCCAAAGAAACTGGATCAAGTGTTGCTGAGGGTGGGAAAATGCTCCATCAGTCGGTAGTCTCTCTATTTGAGTCTCAGTGGAGCACATTACAGATGGTTGTACTAAGGGAAATCCTGCTATCTGCTGTCCGAGCAGGAGATCCTCTTGCTGCGTGGGGTGCAGCTGCAAGACTACTAAGATCATATTATCCTTTAATTACACCTGCTGGGCAAAATGGCCTTGCTAGTGCACTTTCCAATTCAGCGGATCGGTTGCCCTCAGGAACTCGCTGTGCTGACCCTGCCTTACCTTTCATTAGGTTGTATTCTTTTCCTCTCCATCCCTCACAAATGGACATTGTAAAGCGCAATCCTGCTAGAGAAGACTGGTGGGCTGGAGCTGCTAATACTGGGCCTTTTATTTATACACCATTCAGCAAGGGAGAGCCAAGCAATAACAGCAAACAGGAGCTGATTTGGATTGTTGGAGAACCAGTTCAGATTTTGGTGGAACTGGCAAACCCATGCGGCTTTGATTTGAGGGTCGATAGTATATATCTCTCTGTGCCTTCAGGAAATTTTGATGCTTTTCCAGTCACTGTAAATCTTCCACCCAATTCATCAAAGGTGGTCACTTTATCAGGGATCCCAACTTCAGTAGGGCCAGTGACAATTCCTGGGTGCACCGTCCACTGCTTTGGTGTTATTACTGAACACCTGTTTAAGGATGTTGACAATCTACTCCTTGGAGCTACACAAGGACTTGTTCTTTCTGACCCTTTCAGATGCTGTGGGTCTGCAAGGTTGAAAAATATATCTGTTCCAAGTATTTCTGTAGTACCGCCACTGCCATTACTGGTTTCACGTGTTGTTGGTGGTGATGGTGCAATCATTCTATACGAAGGTGAAATTCGTGATATATGGATAAGTCTGGCTAATGCTGGTACAGTTCCAGTTGAGCAAGTCCATGTATCGCTATCTGGAAAACACCAAGATTCTGTTCTCTTTATTGCATCTGAAACCTTAAAATCTGCCCTTCCCTTGAGGCCTGGAGCAGAAGTGACAATTCCTGTGACTTTAAAAGCTTGGCGAATTGTCTTAGCGGATGCAGATACTGCTGCTGGCAGGAGTGCCTCTAAGCACTCTAAGGATGGAAATAGCCCCACATTATTGATCCATTATGCAGGGACTCTGCCAAATACTGGAGATCCTTCAACAGAAAAGTCTGTTGTCCCACCTGGCAGACGCCTGGTTGTTCCTTTGCAGATTTGTGTTTTGCAAGGTTTGTCTTTTGTAAAGGCTCGTCTGCTCTCGATGGAGATTCCTGCACAAGTAGGTGAAAACCTTCCGAAGCCAGTTCATATTGACAATAGTCTTACTGAAGGAGCTGTGGGCACTCCAAATAAGATGGACAGATTGGTGAAAATTGATCCTTTTAGAGGAAGCTGGGGACTACGCTTCCTTGAACTTGAGTTGTCTAATCCAACTGATGTTGTCTTTGAAATTAGTGTTTCAGTCCAACTGGAGAACACCGATCATGAGCATAGCCTCTCCGTTGATCGAGATGCTACTGAGTATGGTTACCCTAAAACAAGAATTGATCGAGATTGTTCTGCGAGGGTACTGATACCACTGGAGCATTTTAAATTGCCTGTTCTTGATGATTCTTTTTTTGTAAAAGATAATCAAGCTGATGGGAGTGGCAGAAGTTATAGCTTTTCAGAAAGGAATACGAAAGCTGAACTTAATGCCTCTATCAAGAACCTTATATCTAGAATAAAGGTTAGGTGGCAATCAGGGCGAAACAGCACTGGAGAATTAAATATCAAGGATGCTGTACAGGCTGCCCTTCAGACATCTGTTATGGATGTACTGCTGCCAGACCCATTAACATTTTGCTTCAGGCTTTCCAGAAATGGCCCTGGACCTGAAAATATTGATTCCCATGTAGAATCCAATGATCAAGTTGACTCTTCTGCTTCTAAAGGTTCTGTGATGGCGCATGAAATGACTCCAATGGAAGTTATGGTTCGTAACAACACAAAGGAATTAATCAAGATGAGTCTTAACGTTGTGTGCAGAGATGTTGCGGGAGAGGATTGTGTAGAGTGTGCAAATGCAACTGTCTTATGTTCTGGTGTTTTGGGTGGGATAACCATGGAGGTTCCACCGCTTGAAGAAATCAACCATTCTTTCTCTTTGTATTTTCTCGTCCCCGGGGAGTACACACTAATAGCGGCTGCCATGATCGAAGATGCTAATGATATCCTCAGGGCTCGTGCAAGAACCAAATCCTCTGATGAGCCGATCTTCTGTCGTGGCCCTCCATATCATGTCCGGGTTGTTGGCACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000159 GO:0000278 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008287 GO:0009987 GO:0010921 GO:0016311 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0032502 GO:0032991 GO:0035303 GO:0035304 GO:0036211 GO:0043170 GO:0043412 GO:0043666 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0060255 GO:0065007 GO:0065009 GO:0070262 GO:0071704 GO:0080090 GO:0098772 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04151 ko04152 ko04261 ko04390 ko04391 ko04530 ko04728 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04151 map04152 map04261 map04390 map04391 map04530 map04728 map05142 map05160 map05165

Pfam Domains

Protein Families

WD40

Protein Analysis

1196

Amino Acids

130.81

Weight (kDa)

5.98

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAPPC9-Trs120	PF08626	9 - 184	2.9e-17	Trs120/TRAPPC9, N-terminal domain
TRAPPC9-Trs120	PF08626	203 - 268	1.1e-10	Trs120/TRAPPC9, N-terminal domain
TPR_TRAPPC9-Trs120	PF26251	330 - 498	8.1e-12	Trs120/TRAPPC9 TPR
Ig_TRAPPC9-Trs120_1st	PF26254	546 - 645	4.2e-20	Trs120/TRAPPC9, first Ig-like domain
Ig_TRAPPC9-Trs120_3rd	PF26282	883 - 1036	4.1e-12	Trs120/TRAPPC9, third Ig-like domain
Ig_TRAPPC9-Trs120_4th	PF26283	1061 - 1192	5.3e-13	Trs120/TRAPPC9, fourth Ig-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17720 AT1G17720 AT1G51690 AT1G51690 AT1G51690 AT1G51690 AT1G51690
fragaria_vesca	FvH4_2g32090 FvH4_2g32090 FvH4_2g32090 FvH4_2g32090 FvH4_2g32090 FvH4_2g32090 FvH4_6g33020 FvH4_6g33020 FvH4_6g33020 FvH4_6g33020
malus_domestica	MD08G1043800.v1.1 MD08G1043900.v1.1 MD08G1044000.v1.1 MD09G1195400.v1.1 MD15G1061300.v1.1 MD17G1176000.v1.1
prunus_persica	Prupe.1G414000_v2.0.a1 Prupe.1G414000_v2.0.a1 Prupe.3G052100_v2.0.a1 Prupe.3G052100_v2.0.a1
pyrus_communis	pycom08g03540 pycom15g05740 pycom17g18330
rosa_chinensis	RchiOBHm_Chr2g0142561 RchiOBHm_Chr6g0310651
rosa_laevigata	RLG00000010469 RLG00000019967
rosa_multiflora	Rmu_co8494963.1_g000001 Rmu_sc0000482.1_g000004 Rmu_sc0007390.1_g000003
rosa_roxburghii	Rroxscaffold_2G00102520 Rroxscaffold_7G00158380
rosa_rugosa	Rorug02G0373900 Rorug02G0374000 Rorug06G0381900 Rorug06G0381900 Rorug06G0381900
rosa_samantha	Rh2BG435300 Rh2DG445300 Rh6BG505400
rosa_wichuraiana	Rw2G034890 Rw6G043120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	623
AarI	CACCTGC	1 cut(s)	1465
Acc36I	ACCTGC	2 cut(s)	1120, 1465
AccB1I	GGYRCC	1 cut(s)	227
AccB7I	CCANNNNNTGG	2 cut(s)	243, 2435
AccII	CGCG	3 cut(s)	42, 87, 461
AclI	AACGTT	1 cut(s)	3303
AcoI	YGGCCR	1 cut(s)	61
AcsI	RAATTY	2 cut(s)	1810, 2142
AcuI	CTGAAG	5 cut(s)	1788, 1872, 2634, 3068, 3118
AcvI	CACGTG	2 cut(s)	67, 2099
AcyI	GRCGYC	3 cut(s)	228, 581, 2479
AfaI	GTAC	7 cut(s)	1356, 2073, 2179, 2856, 3072, 3105, 3458
AflII	CTTAAG	1 cut(s)	548
AflIII	ACRYGT	1 cut(s)	2098
AgeI	ACCGGT	1 cut(s)	694
AhdI	GACNNNNNGTC	1 cut(s)	256
AjiI	CACGTC	2 cut(s)	13, 974
AjnI	CCWGG	7 cut(s)	185, 242, 1909, 2281, 2470, 2481, 3154
AjuI	GAANNNNNNNTTGG	2 cut(s)	2217, 2249
AloI	GAACNNNNNNTCC	2 cut(s)	1713, 1745
Alw21I	GWGCWC	5 cut(s)	159, 655, 1340, 1486, 1919
Alw26I	GTCTC	2 cut(s)	1318, 1332
Alw44I	GTGCAC	3 cut(s)	651, 1482, 1915
AlwNI	CAGNNNCTG	5 cut(s)	243, 1705, 1832, 2022, 2348
Ama87I	CYCGRG	1 cut(s)	3449
ApaLI	GTGCAC	3 cut(s)	651, 1482, 1915
ApoI	RAATTY	2 cut(s)	1810, 2142
AseI	ATTAAT	1 cut(s)	3284
AsiGI	ACCGGT	1 cut(s)	694
Asp700I	GAANNNNTTC	3 cut(s)	887, 1728, 2577
AspLEI	GCGC	4 cut(s)	87, 230, 1602, 3235
AspS9I	GGNCC	9 cut(s)	49, 76, 468, 814, 1646, 1895, 3152, 3158, 3554
AsuC2I	CCSGG	5 cut(s)	74, 311, 3450, 3451, 3572
AsuHPI	GGTGA	8 cut(s)	170, 680, 684, 909, 2123, 2150, 2582, 2665
AvaI	CYCGRG	1 cut(s)	3449
AvaII	GGWCC	3 cut(s)	49, 76, 3158
AxyI	CCTNAGG	2 cut(s)	1513, 3503
BaeGI	GKGCMC	5 cut(s)	72, 655, 1486, 1919, 2630
BaeI	ACNNNNGTAYC	2 cut(s)	816, 849
BalI	TGGCCA	1 cut(s)	63
BamHI	GGATCC	1 cut(s)	1878
BanI	GGYRCC	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	3511
BauI	CACGAG	1 cut(s)	3510
BbrPI	CACGTG	2 cut(s)	67, 2099
BbsI	GAAGAC	2 cut(s)	665, 1623
Bbv12I	GWGCWC	5 cut(s)	159, 655, 1340, 1486, 1919
BbvCI	CCTCAGC	1 cut(s)	1281
BceAI	ACGGC	3 cut(s)	119, 263, 815
BciT130I	CCWGG	7 cut(s)	187, 244, 1911, 2283, 2472, 2483, 3156
BciVI	GTATCC	1 cut(s)	817
BclI	TGATCA	1 cut(s)	3193
BcnI	CCSGG	5 cut(s)	74, 311, 3450, 3451, 3572
BcoDI	GTCTC	2 cut(s)	1318, 1332
BfaI	CTAG	5 cut(s)	738, 984, 1479, 1611, 3006
BfmI	CTRYAG	3 cut(s)	349, 877, 2067
BfoI	RGCGCY	1 cut(s)	231
BfrI	CTTAAG	1 cut(s)	548
BfuAI	ACCTGC	2 cut(s)	1120, 1465
BfuI	GTATCC	1 cut(s)	817
BlpI	GCTNAGC	1 cut(s)	555
Bme18I	GGWCC	3 cut(s)	49, 76, 3158
BmeRI	GACNNNNNGTC	1 cut(s)	256
BmeT110I	CYCGRG	1 cut(s)	3449
BmgBI	CACGTC	2 cut(s)	13, 974
BmgT120I	GGNCC	9 cut(s)	49, 76, 468, 814, 1646, 1895, 3152, 3158, 3554
BmiI	GGNNCC	6 cut(s)	6, 229, 322, 440, 1880, 3399
BmrI	ACTGGG	1 cut(s)	1653
BmuI	ACTGGG	1 cut(s)	1653
BoxI	GACNNNNGTC	2 cut(s)	572, 2604
BpiI	GAAGAC	2 cut(s)	665, 1623
BpmI	CTGGAG	6 cut(s)	1650, 2304, 2457, 2777, 2888, 3066
Bpu10I	CCTNAGC	1 cut(s)	1281
Bpu1102I	GCTNAGC	1 cut(s)	555
BpuEI	CTTGAG	5 cut(s)	579, 956, 1108, 2296, 2723
BpuMI	CCSGG	5 cut(s)	74, 311, 3450, 3451, 3572
BsaAI	YACGTR	2 cut(s)	67, 2099
BsaBI	GATNNNNATC	1 cut(s)	705
BsaHI	GRCGYC	3 cut(s)	228, 581, 2479
BsaWI	WCCGGW	2 cut(s)	694, 746
BsaXI	ACNNNNNCTCC	6 cut(s)	80, 110, 1713, 1743, 2277, 2307
Bse118I	RCCGGY	1 cut(s)	694
Bse21I	CCTNAGG	2 cut(s)	1513, 3503
Bse3DI	GCAATG	3 cut(s)	518, 1188, 1203
Bse8I	GATNNNNATC	1 cut(s)	705
BseBI	CCWGG	7 cut(s)	187, 244, 1911, 2283, 2472, 2483, 3156
BseGI	GGATG	7 cut(s)	424, 1573, 1966, 2344, 2389, 3070, 3106
BseJI	GATNNNNATC	1 cut(s)	705
BseMI	GCAATG	3 cut(s)	518, 1188, 1203
BseRI	GAGGAG	1 cut(s)	629
BseSI	GKGCMC	5 cut(s)	72, 655, 1486, 1919, 2630
BseYI	CCCAGC	3 cut(s)	236, 1460, 2679
BsgI	GTGCAG	4 cut(s)	708, 1434, 2544, 3331
Bsh1236I	CGCG	3 cut(s)	42, 87, 461
BshNI	GGYRCC	1 cut(s)	227
BshTI	ACCGGT	1 cut(s)	694
BsiHKAI	GWGCWC	5 cut(s)	159, 655, 1340, 1486, 1919
BsiHKCI	CYCGRG	1 cut(s)	3449
BsiSI	CCGG	8 cut(s)	8, 74, 195, 311, 695, 747, 3450, 3571
BslFI	GGGAC	6 cut(s)	203, 580, 2434, 2450, 2697, 3431
BsmAI	GTCTC	2 cut(s)	1318, 1332
BsmFI	GGGAC	6 cut(s)	203, 580, 2434, 2450, 2697, 3431
BsmI	GAATGC	1 cut(s)	907
BsoBI	CYCGRG	1 cut(s)	3449
Bsp1286I	GDGCHC	8 cut(s)	72, 159, 655, 1340, 1486, 1919, 2630, 3511
Bsp1407I	TGTACA	1 cut(s)	3070
Bsp1720I	GCTNAGC	1 cut(s)	555
Bsp19I	CCATGG	1 cut(s)	3390
BspFNI	CGCG	3 cut(s)	42, 87, 461
BspHI	TCATGA	1 cut(s)	2770
BspLI	GGNNCC	6 cut(s)	6, 229, 322, 440, 1880, 3399
BspMI	ACCTGC	2 cut(s)	1120, 1465
BspT107I	GGYRCC	1 cut(s)	227
BspTI	CTTAAG	1 cut(s)	548
BsrDI	GCAATG	3 cut(s)	518, 1188, 1203
BsrFI	RCCGGY	1 cut(s)	694
BsrGI	TGTACA	1 cut(s)	3070
BssAI	RCCGGY	1 cut(s)	694
BssNI	GRCGYC	3 cut(s)	228, 581, 2479
BssSI	CACGAG	1 cut(s)	3510
BssT1I	CCWWGG	3 cut(s)	1239, 1978, 3390
Bst2BI	CACGAG	1 cut(s)	3510
Bst2UI	CCWGG	7 cut(s)	187, 244, 1911, 2283, 2472, 2483, 3156
Bst4CI	ACNGT	5 cut(s)	299, 1834, 1921, 2182, 3358
Bst6I	CTCTTC	2 cut(s)	831, 3211
BstACI	GRCGYC	3 cut(s)	228, 581, 2479
BstAFI	CTTAAG	1 cut(s)	548
BstAPI	GCANNNNNTGC	2 cut(s)	1022, 2348
BstAUI	TGTACA	1 cut(s)	3070
BstBAI	YACGTR	2 cut(s)	67, 2099
BstC8I	GCNNGC	4 cut(s)	561, 651, 981, 2356
BstDSI	CCRYGG	3 cut(s)	459, 831, 3390
BstEII	GGTNACC	1 cut(s)	2813
BstENI	CCTNNNNNAGG	2 cut(s)	1955, 2670
BstF5I	GGATG	7 cut(s)	424, 1573, 1966, 2344, 2389, 3070, 3106
BstFNI	CGCG	3 cut(s)	42, 87, 461
BstH2I	RGCGCY	1 cut(s)	231
BstHHI	GCGC	4 cut(s)	87, 230, 1602, 3235
BstMAI	GTCTC	2 cut(s)	1318, 1332
BstNI	CCWGG	7 cut(s)	187, 244, 1911, 2283, 2472, 2483, 3156
BstPAI	GACNNNNGTC	2 cut(s)	572, 2604
BstPI	GGTNACC	1 cut(s)	2813
BstSFI	CTRYAG	3 cut(s)	349, 877, 2067
BstSLI	GKGCMC	5 cut(s)	72, 655, 1486, 1919, 2630
BstUI	CGCG	3 cut(s)	42, 87, 461
BstV2I	GAAGAC	2 cut(s)	665, 1623
BstX2I	RGATCY	4 cut(s)	313, 1393, 1878, 2440
BstXI	CCANNNNNNTGG	1 cut(s)	1931
BstYI	RGATCY	4 cut(s)	313, 1393, 1878, 2440
Bsu36I	CCTNAGG	2 cut(s)	1513, 3503
BsuI	GTATCC	1 cut(s)	817
BtgI	CCRYGG	3 cut(s)	459, 831, 3390
BtrI	CACGTC	2 cut(s)	13, 974
BtsCI	GGATG	7 cut(s)	424, 1573, 1966, 2344, 2389, 3070, 3106
BtsI	GCAGTG	3 cut(s)	1924, 2078, 3582
BveI	ACCTGC	2 cut(s)	1120, 1465
Cac8I	GCNNGC	4 cut(s)	561, 651, 981, 2356
CaiI	CAGNNNCTG	5 cut(s)	243, 1705, 1832, 2022, 2348
CciI	TCATGA	1 cut(s)	2770
CfoI	GCGC	4 cut(s)	87, 230, 1602, 3235
Cfr10I	RCCGGY	1 cut(s)	694
Cfr13I	GGNCC	9 cut(s)	49, 76, 468, 814, 1646, 1895, 3152, 3158, 3554
Cfr42I	CCGCGG	1 cut(s)	462
Cfr9I	CCCGGG	1 cut(s)	3449
CseI	GACGC	2 cut(s)	589, 2487
Csp6I	GTAC	7 cut(s)	1355, 2072, 2178, 2855, 3071, 3104, 3457
CspAI	ACCGGT	1 cut(s)	694
CviQI	GTAC	7 cut(s)	1355, 2072, 2178, 2855, 3071, 3104, 3457
DinI	GGCGCC	1 cut(s)	229
DraI	TTTAAA	2 cut(s)	2313, 2878
DriI	GACNNNNNGTC	1 cut(s)	256
EaeI	YGGCCR	1 cut(s)	61
Eam1104I	CTCTTC	2 cut(s)	831, 3211
Eam1105I	GACNNNNNGTC	1 cut(s)	256
EarI	CTCTTC	2 cut(s)	831, 3211
EciI	GGCGGA	2 cut(s)	98, 121
Eco130I	CCWWGG	3 cut(s)	1239, 1978, 3390
Eco147I	AGGCCT	1 cut(s)	2281
Eco24I	GRGCYC	1 cut(s)	3511
Eco32I	GATATC	2 cut(s)	851, 3499
Eco47I	GGWCC	3 cut(s)	49, 76, 3158
Eco57I	CTGAAG	5 cut(s)	1788, 1872, 2634, 3068, 3118
Eco72I	CACGTG	2 cut(s)	67, 2099
Eco81I	CCTNAGG	2 cut(s)	1513, 3503
Eco88I	CYCGRG	1 cut(s)	3449
Eco91I	GGTNACC	1 cut(s)	2813
EcoNI	CCTNNNNNAGG	2 cut(s)	1955, 2670
EcoO65I	GGTNACC	1 cut(s)	2813
EcoRII	CCWGG	7 cut(s)	185, 242, 1909, 2281, 2470, 2481, 3154
EcoRV	GATATC	2 cut(s)	851, 3499
EcoT14I	CCWWGG	3 cut(s)	1239, 1978, 3390
EcoT38I	GRGCYC	1 cut(s)	3511
EgeI	GGCGCC	1 cut(s)	229
EheI	GGCGCC	1 cut(s)	229
ErhI	CCWWGG	3 cut(s)	1239, 1978, 3390
FalI	AAGNNNNNCTT	4 cut(s)	155, 187, 2961, 2993
FaqI	GGGAC	6 cut(s)	203, 580, 2434, 2450, 2697, 3431
FauI	CCCGC	4 cut(s)	406, 466, 556, 3316
FbaI	TGATCA	1 cut(s)	3193
FokI	GGATG	7 cut(s)	431, 1560, 1973, 2351, 2396, 3077, 3113
FriOI	GRGCYC	1 cut(s)	3511
FspBI	CTAG	5 cut(s)	738, 984, 1479, 1611, 3006
GlaI	GCGC	4 cut(s)	86, 229, 1601, 3234
GsaI	CCCAGC	3 cut(s)	240, 1464, 2683
GsuI	CTGGAG	6 cut(s)	1650, 2304, 2457, 2777, 2888, 3066
HaeII	RGCGCY	1 cut(s)	231
HapII	CCGG	8 cut(s)	8, 74, 195, 311, 695, 747, 3450, 3571
HgaI	GACGC	2 cut(s)	589, 2487
HhaI	GCGC	4 cut(s)	87, 230, 1602, 3235
Hin1I	GRCGYC	3 cut(s)	228, 581, 2479
Hin6I	GCGC	4 cut(s)	85, 228, 1600, 3233
HinP1I	GCGC	4 cut(s)	85, 228, 1600, 3233
HincII	GTYRAC	3 cut(s)	744, 1966, 3202
HindII	GTYRAC	3 cut(s)	744, 1966, 3202
HindIII	AAGCTT	2 cut(s)	1230, 2316
HpaII	CCGG	8 cut(s)	8, 74, 195, 311, 695, 747, 3450, 3571
HphI	GGTGA	8 cut(s)	170, 680, 684, 909, 2123, 2150, 2582, 2665
Hpy166II	GTNNAC	8 cut(s)	653, 744, 1484, 1917, 1924, 1966, 3202, 3459
Hpy8I	GTNNAC	8 cut(s)	653, 744, 1484, 1917, 1924, 1966, 3202, 3459
Hpy99I	CGWCG	1 cut(s)	377
HpyCH4III	ACNGT	5 cut(s)	299, 1834, 1921, 2182, 3358
HpyCH4IV	ACGT	5 cut(s)	12, 66, 973, 2098, 3303
HpySE526I	ACGT	5 cut(s)	12, 66, 973, 2098, 3303
Hsp92I	GRCGYC	3 cut(s)	228, 581, 2479
HspAI	GCGC	4 cut(s)	85, 228, 1600, 3233
KasI	GGCGCC	1 cut(s)	227
Ksp22I	TGATCA	1 cut(s)	3193
KspI	CCGCGG	1 cut(s)	462
MaeI	CTAG	5 cut(s)	738, 984, 1479, 1611, 3006
MaeII	ACGT	5 cut(s)	12, 66, 973, 2098, 3303
MaeIII	GTNAC	7 cut(s)	1828, 1864, 1900, 2293, 2305, 2813, 3266
MflI	RGATCY	4 cut(s)	313, 1393, 1878, 2440
MhlI	GDGCHC	8 cut(s)	72, 159, 655, 1340, 1486, 1919, 2630, 3511
MlsI	TGGCCA	1 cut(s)	63
MluNI	TGGCCA	1 cut(s)	63
Mly113I	GGCGCC	1 cut(s)	228
MlyI	GAGTC	6 cut(s)	185, 1334, 2416, 3197, 3238, 3304
MmeI	TCCRAC	5 cut(s)	285, 393, 1699, 2741, 2776
Mox20I	TGGCCA	1 cut(s)	63
MroXI	GAANNNNTTC	3 cut(s)	887, 1728, 2577
MscI	TGGCCA	1 cut(s)	63
Msp20I	TGGCCA	1 cut(s)	63
MspA1I	CMGCKG	3 cut(s)	461, 1418, 1499
MspCI	CTTAAG	1 cut(s)	548
MspI	CCGG	8 cut(s)	8, 74, 195, 311, 695, 747, 3450, 3571
Mva1269I	GAATGC	1 cut(s)	907
MvaI	CCWGG	7 cut(s)	187, 244, 1911, 2283, 2472, 2483, 3156
MvnI	CGCG	3 cut(s)	42, 87, 461
NarI	GGCGCC	1 cut(s)	228
NciI	CCSGG	5 cut(s)	74, 311, 3450, 3451, 3572
NcoI	CCATGG	1 cut(s)	3390
NlaIV	GGNNCC	6 cut(s)	6, 229, 322, 440, 1880, 3399
NmeAIII	GCCGAG	2 cut(s)	201, 297
NmuCI	GTSAC	5 cut(s)	1828, 1864, 1900, 2293, 2305
PagI	TCATGA	1 cut(s)	2770
PaqCI	CACCTGC	1 cut(s)	1465
PasI	CCCWGGG	2 cut(s)	186, 243
PceI	AGGCCT	1 cut(s)	2281
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PctI	GAATGC	1 cut(s)	907
PdmI	GAANNNNTTC	3 cut(s)	887, 1728, 2577
PflMI	CCANNNNNTGG	2 cut(s)	243, 2435
PinAI	ACCGGT	1 cut(s)	694
PleI	GAGTC	6 cut(s)	185, 1333, 2416, 3197, 3238, 3303
PluTI	GGCGCC	1 cut(s)	231
PmaCI	CACGTG	2 cut(s)	67, 2099
PmlI	CACGTG	2 cut(s)	67, 2099
PpsI	GAGTC	6 cut(s)	185, 1333, 2416, 3197, 3238, 3303
Ppu21I	YACGTR	2 cut(s)	67, 2099
PshAI	GACNNNNGTC	2 cut(s)	572, 2604
PshBI	ATTAAT	1 cut(s)	3284
PsiI	TTATAA	1 cut(s)	623
Psp1406I	AACGTT	1 cut(s)	3303
Psp6I	CCWGG	7 cut(s)	185, 242, 1909, 2281, 2470, 2481, 3154
PspCI	CACGTG	2 cut(s)	67, 2099
PspEI	GGTNACC	1 cut(s)	2813
PspFI	CCCAGC	3 cut(s)	236, 1460, 2679
PspGI	CCWGG	7 cut(s)	185, 242, 1909, 2281, 2470, 2481, 3154
PspN4I	GGNNCC	6 cut(s)	6, 229, 322, 440, 1880, 3399
PspPI	GGNCC	9 cut(s)	49, 76, 468, 814, 1646, 1895, 3152, 3158, 3554
PstNI	CAGNNNCTG	5 cut(s)	243, 1705, 1832, 2022, 2348
PsuI	RGATCY	4 cut(s)	313, 1393, 1878, 2440
PvuII	CAGCTG	1 cut(s)	1418
RsaI	GTAC	7 cut(s)	1356, 2073, 2179, 2856, 3072, 3105, 3458
RsaNI	GTAC	7 cut(s)	1355, 2072, 2178, 2855, 3071, 3104, 3457
SacII	CCGCGG	1 cut(s)	462
Sau96I	GGNCC	9 cut(s)	49, 76, 468, 814, 1646, 1895, 3152, 3158, 3554
SchI	GAGTC	6 cut(s)	185, 1334, 2416, 3197, 3238, 3304
SduI	GDGCHC	8 cut(s)	72, 159, 655, 1340, 1486, 1919, 2630, 3511
SfcI	CTRYAG	3 cut(s)	349, 877, 2067
SfoI	GGCGCC	1 cut(s)	229
Sfr303I	CCGCGG	1 cut(s)	462
SgrBI	CCGCGG	1 cut(s)	462
SinI	GGWCC	3 cut(s)	49, 76, 3158
SmaI	CCCGGG	1 cut(s)	3451
SmlI	CTYRAG	6 cut(s)	548, 594, 935, 1123, 2275, 2702
SmoI	CTYRAG	6 cut(s)	548, 594, 935, 1123, 2275, 2702
SseBI	AGGCCT	1 cut(s)	2281
SspDI	GGCGCC	1 cut(s)	227
SspI	AATATT	1 cut(s)	3169
SspMI	CTAG	5 cut(s)	738, 984, 1479, 1611, 3006
StuI	AGGCCT	1 cut(s)	2281
StyI	CCWWGG	3 cut(s)	1239, 1978, 3390
TaaI	ACNGT	5 cut(s)	299, 1834, 1921, 2182, 3358
TaiI	ACGT	5 cut(s)	15, 69, 976, 2101, 3306
TatI	WGTACW	4 cut(s)	1354, 3070, 3103, 3456
TauI	GCSGC	5 cut(s)	228, 368, 515, 1764, 3473
TseFI	GTSAC	5 cut(s)	1828, 1864, 1900, 2293, 2305
Tsp45I	GTSAC	5 cut(s)	1828, 1864, 1900, 2293, 2305
TspDTI	ATGAA	6 cut(s)	701, 880, 1537, 1842, 2582, 3252
TspGWI	ACGGA	4 cut(s)	313, 334, 652, 2776
TspMI	CCCGGG	1 cut(s)	3449
Van91I	CCANNNNNTGG	2 cut(s)	243, 2435
Vha464I	CTTAAG	1 cut(s)	548
VneI	GTGCAC	3 cut(s)	651, 1482, 1915
VpaK11BI	GGWCC	3 cut(s)	49, 76, 3158
VspI	ATTAAT	1 cut(s)	3284
XagI	CCTNNNNNAGG	2 cut(s)	1955, 2670
XapI	RAATTY	2 cut(s)	1810, 2142
XbaI	TCTAGA	1 cut(s)	3005
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XmaI	CCCGGG	1 cut(s)	3449
XmnI	GAANNNNTTC	3 cut(s)	887, 1728, 2577
XspI	CTAG	5 cut(s)	738, 984, 1479, 1611, 3006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.