Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001642

Physical Location & Seq

Genomic Coordinates Reverse (-)

47672642 .. 47675622

Gene Structure 2981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0374000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGAGGGTTTTGAAGCTGATAGAGCGGCGGCGTTTGGCTCCGGTGACGCGAAACGACGTCGTTGATGAGAACGAAGGTGTACGGAGCAGGAGGAGGAGCGTAACTCACTCGTATAAGAAACTAGCTCCGTCGCCATTGCTCACGCTCTCCGTTCTGAAGCTCGACGGCTCTGTTTTCGAAATTCATGTTGGTAGGACAGCGACTGTAGCAGAGCTCAAACAAGCAGTAGAGGTGCTGTTTACTTCTTCTATCAGCAAGATTCCATGGTCACTAGTTTGGGGGCATTTCTGCTTGTGCCATGTAGGTAAGAAGCTAACTAATGACAGAGCGCATATTCGGAATTTTGGGATCAAGGATGGTGATCAAATTGAATTCATTAGGCATATGTCCATCAGCAACATGCCTTTGGAAAAAGGGTCTAAGAATGAGACTGTGCCATACAAACAGCACTTAATGTTGTCATATGGATCCAGTGGTCATGAGGAGGAAGTAGAGAATGGTTCAGAGGATTTCGACAATAATGTAAGTCAGGAGGACAACTCTGAGTATCCCAATAGAGCTGTGAAGGAAGGTCCTGTGCCTGGCTTTAAGTTGCCTCGTTTCTGGAAGGGGTGGCTCTCATACTCCAAGGTTGTTGAAGGTTTTAAGAGAGGGCAGGAATTATTGATTGAGATGCCTGAATTCCTCAGGAAGCGAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000159 GO:0000278 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008287 GO:0009987 GO:0010921 GO:0016311 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0032502 GO:0032991 GO:0035303 GO:0035304 GO:0036211 GO:0043170 GO:0043412 GO:0043666 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0060255 GO:0065007 GO:0065009 GO:0070262 GO:0071704 GO:0080090 GO:0098772 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04151 ko04152 ko04261 ko04390 ko04391 ko04530 ko04728 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04151 map04152 map04261 map04390 map04391 map04530 map04728 map05142 map05160 map05165

Pfam Domains

Protein Families

WD40

Protein Analysis

233

Amino Acids

26.7

Weight (kDa)

9.28

Isoelectric Point (pI)

55.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubiquitin_4	PF18036	47 - 128	3.7e-22	Ubiquitin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17720 AT1G17720 AT1G51690 AT1G51690 AT1G51690 AT1G51690 AT1G51690
fragaria_vesca	FvH4_2g32090 FvH4_2g32090 FvH4_2g32090 FvH4_2g32090 FvH4_2g32090 FvH4_2g32090 FvH4_6g33020 FvH4_6g33020 FvH4_6g33020 FvH4_6g33020
malus_domestica	MD08G1043800.v1.1 MD08G1043900.v1.1 MD08G1044000.v1.1 MD09G1195400.v1.1 MD15G1061300.v1.1 MD17G1176000.v1.1
prunus_persica	Prupe.1G414000_v2.0.a1 Prupe.1G414000_v2.0.a1 Prupe.3G052100_v2.0.a1 Prupe.3G052100_v2.0.a1
pyrus_communis	pycom08g03540 pycom15g05740 pycom17g18330
rosa_chinensis	RchiOBHm_Chr2g0142561 RchiOBHm_Chr6g0310651
rosa_laevigata	RLG00000010469 RLG00000019967
rosa_multiflora	Rmu_co8494963.1_g000001 Rmu_sc0000482.1_g000004 Rmu_sc0007390.1_g000003
rosa_roxburghii	Rroxscaffold_2G00102520 Rroxscaffold_7G00158380
rosa_rugosa	Rorug02G0373900 Rorug02G0374000 Rorug06G0381900 Rorug06G0381900 Rorug06G0381900
rosa_samantha	Rh2BG435300 Rh2DG445300 Rh6BG505400
rosa_wichuraiana	Rw2G034890 Rw6G043120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	60
AccBSI	CCGCTC	1 cut(s)	25
AccII	CGCG	1 cut(s)	49
AciI	CCGC	2 cut(s)	25, 28
AclWI	GGATC	3 cut(s)	356, 462, 475
AcsI	RAATTY	4 cut(s)	180, 340, 371, 680
AcuI	CTGAAG	1 cut(s)	176
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	1 cut(s)	81
AfiI	CCNNNNNNNGG	1 cut(s)	581
AgsI	TTSAA	3 cut(s)	13, 371, 638
AhlI	ACTAGT	1 cut(s)	271
AjnI	CCWGG	1 cut(s)	580
AjuI	GAANNNNNNNTTGG	2 cut(s)	171, 203
AluBI	AGCT	6 cut(s)	16, 125, 160, 214, 313, 560
AluI	AGCT	6 cut(s)	16, 125, 160, 214, 313, 560
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	1 cut(s)	422
AlwI	GGATC	3 cut(s)	356, 462, 475
AlwNI	CAGNNNCTG	1 cut(s)	203
ApoI	RAATTY	4 cut(s)	180, 340, 371, 680
AspLEI	GCGC	1 cut(s)	331
AspS9I	GGNCC	1 cut(s)	572
AsuHPI	GGTGA	2 cut(s)	55, 371
AsuII	TTCGAA	1 cut(s)	177
AvaII	GGWCC	1 cut(s)	572
AxyI	CCTNAGG	1 cut(s)	686
BamHI	GGATCC	1 cut(s)	467
BanII	GRGCYC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	216
BccI	CCATC	2 cut(s)	350, 398
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	582
BciVI	GTATCC	1 cut(s)	558
BclI	TGATCA	1 cut(s)	361
BcoDI	GTCTC	1 cut(s)	422
BcuI	ACTAGT	1 cut(s)	271
BfaI	CTAG	3 cut(s)	122, 272, 700
BfmI	CTRYAG	1 cut(s)	204
BfuI	GTATCC	1 cut(s)	558
BisI	GCNGC	2 cut(s)	26, 29
BlsI	GCNGC	2 cut(s)	27, 30
Bme1390I	CCNGG	1 cut(s)	582
Bme18I	GGWCC	1 cut(s)	572
BmgT120I	GGNCC	1 cut(s)	572
BmiI	GGNNCC	2 cut(s)	39, 469
BmrFI	CCNGG	1 cut(s)	582
BmsI	GCATC	1 cut(s)	663
BplI	GAGNNNNNCTC	4 cut(s)	88, 120, 524, 556
Bpu14I	TTCGAA	1 cut(s)	177
BsaBI	GATNNNNATC	1 cut(s)	360
BsaHI	GRCGYC	1 cut(s)	57
BsaJI	CCNNGG	2 cut(s)	263, 627
BsaWI	WCCGGW	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	1 cut(s)	581
Bse1I	ACTGG	1 cut(s)	471
Bse21I	CCTNAGG	1 cut(s)	686
Bse3DI	GCAATG	1 cut(s)	134
Bse8I	GATNNNNATC	1 cut(s)	360
BseBI	CCWGG	1 cut(s)	582
BseDI	CCNNGG	2 cut(s)	263, 627
BseGI	GGATG	1 cut(s)	361
BseJI	GATNNNNATC	1 cut(s)	360
BseLI	CCNNNNNNNGG	1 cut(s)	581
BseMI	GCAATG	1 cut(s)	134
BseMII	CTCAG	2 cut(s)	534, 700
BseNI	ACTGG	1 cut(s)	471
BseRI	GAGGAG	3 cut(s)	106, 109, 497
Bsh1236I	CGCG	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	216
BsiSI	CCGG	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	581
BsmAI	GTCTC	1 cut(s)	422
Bsp119I	TTCGAA	1 cut(s)	177
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	3 cut(s)	348, 361, 467
Bsp19I	CCATGG	1 cut(s)	263
BspACI	CCGC	2 cut(s)	25, 28
BspCNI	CTCAG	2 cut(s)	535, 699
BspFNI	CGCG	1 cut(s)	49
BspHI	TCATGA	1 cut(s)	478
BspLI	GGNNCC	2 cut(s)	39, 469
BspPI	GGATC	3 cut(s)	356, 462, 475
BspT104I	TTCGAA	1 cut(s)	177
BsrBI	CCGCTC	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	471
BssECI	CCNNGG	2 cut(s)	263, 627
BssMI	GATC	3 cut(s)	348, 361, 467
BssNI	GRCGYC	1 cut(s)	57
BssT1I	CCWWGG	2 cut(s)	263, 627
Bst2UI	CCWGG	1 cut(s)	582
Bst4CI	ACNGT	2 cut(s)	205, 433
BstACI	GRCGYC	1 cut(s)	57
BstBI	TTCGAA	1 cut(s)	177
BstDEI	CTNAG	3 cut(s)	420, 543, 686
BstDSI	CCRYGG	1 cut(s)	263
BstF5I	GGATG	1 cut(s)	361
BstFNI	CGCG	1 cut(s)	49
BstHHI	GCGC	1 cut(s)	331
BstKTI	GATC	3 cut(s)	351, 364, 470
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	3 cut(s)	348, 361, 467
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 206
BstNI	CCWGG	1 cut(s)	582
BstNSI	RCATGY	1 cut(s)	403
BstSCI	CCNGG	1 cut(s)	580
BstSFI	CTRYAG	1 cut(s)	204
BstUI	CGCG	1 cut(s)	49
BstX2I	RGATCY	1 cut(s)	467
BstYI	RGATCY	1 cut(s)	467
Bsu36I	CCTNAGG	1 cut(s)	686
BsuI	GTATCC	1 cut(s)	558
BtgI	CCRYGG	1 cut(s)	263
BtsCI	GGATG	1 cut(s)	361
BtsIMutI	CAGTG	1 cut(s)	478
CaiI	CAGNNNCTG	1 cut(s)	203
CciI	TCATGA	1 cut(s)	478
CfoI	GCGC	1 cut(s)	331
Cfr13I	GGNCC	1 cut(s)	572
CseI	GACGC	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	80
CviAII	CATG	5 cut(s)	185, 264, 299, 400, 479
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	3 cut(s)	420, 543, 686
DpnI	GATC	3 cut(s)	350, 363, 469
DpnII	GATC	3 cut(s)	348, 361, 467
Ecl136II	GAGCTC	1 cut(s)	214
Eco130I	CCWWGG	2 cut(s)	263, 627
Eco24I	GRGCYC	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	572
Eco53kI	GAGCTC	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	176
Eco81I	CCTNAGG	1 cut(s)	686
EcoICRI	GAGCTC	1 cut(s)	214
EcoO109I	RGGNCCY	1 cut(s)	572
EcoRI	GAATTC	2 cut(s)	371, 680
EcoRII	CCWGG	1 cut(s)	580
EcoT14I	CCWWGG	2 cut(s)	263, 627
EcoT38I	GRGCYC	1 cut(s)	216
ErhI	CCWWGG	2 cut(s)	263, 627
FaeI	CATG	5 cut(s)	188, 267, 302, 403, 482
FatI	CATG	5 cut(s)	184, 263, 298, 399, 478
FauNDI	CATATG	2 cut(s)	384, 463
FbaI	TGATCA	1 cut(s)	361
Fnu4HI	GCNGC	2 cut(s)	26, 29
FokI	GGATG	1 cut(s)	368
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	2 cut(s)	26, 29
FspBI	CTAG	3 cut(s)	122, 272, 700
GlaI	GCGC	1 cut(s)	330
GluI	GCNGC	2 cut(s)	26, 29
HapII	CCGG	1 cut(s)	41
HgaI	GACGC	1 cut(s)	55
HhaI	GCGC	1 cut(s)	331
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	5 cut(s)	188, 267, 302, 403, 482
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HinfI	GANTC	2 cut(s)	259, 696
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	2 cut(s)	55, 371
Hpy166II	GTNNAC	2 cut(s)	80, 240
Hpy188I	TCNGA	4 cut(s)	156, 339, 505, 544
Hpy188III	TCNNGA	4 cut(s)	479, 530, 604, 688
Hpy8I	GTNNAC	2 cut(s)	80, 240
Hpy99I	CGWCG	4 cut(s)	59, 62, 133, 167
HpyAV	CCTTC	5 cut(s)	68, 559, 563, 601, 632
HpyCH4III	ACNGT	2 cut(s)	205, 433
HpyCH4IV	ACGT	1 cut(s)	57
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 206
HpyF3I	CTNAG	3 cut(s)	420, 543, 686
HpySE526I	ACGT	1 cut(s)	57
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	5 cut(s)	188, 267, 302, 403, 482
HspAI	GCGC	1 cut(s)	329
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	3 cut(s)	348, 361, 467
LmnI	GCTCC	4 cut(s)	43, 84, 96, 130
LweI	GCATC	1 cut(s)	663
MaeI	CTAG	3 cut(s)	122, 272, 700
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	3 cut(s)	43, 100, 267
MalI	GATC	3 cut(s)	350, 363, 469
MbiI	CCGCTC	1 cut(s)	25
MboI	GATC	3 cut(s)	348, 361, 467
MboII	GAAGA	1 cut(s)	237
MflI	RGATCY	1 cut(s)	467
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	6 cut(s)	180, 340, 366, 371, 659, 680
MseI	TTAA	3 cut(s)	452, 588, 645
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	582
MvaI	CCWGG	1 cut(s)	582
MvnI	CGCG	1 cut(s)	49
MwoI	GCNNNNNNNGC	2 cut(s)	22, 206
NcoI	CCATGG	1 cut(s)	263
NdeI	CATATG	2 cut(s)	384, 463
NdeII	GATC	3 cut(s)	348, 361, 467
NlaIII	CATG	5 cut(s)	188, 267, 302, 403, 482
NlaIV	GGNNCC	2 cut(s)	39, 469
NmuCI	GTSAC	2 cut(s)	43, 267
NspI	RCATGY	1 cut(s)	403
NspV	TTCGAA	1 cut(s)	177
PagI	TCATGA	1 cut(s)	478
PfeI	GAWTC	2 cut(s)	259, 696
PkrI	GCNGC	2 cut(s)	27, 30
PpuMI	RGGWCCY	1 cut(s)	572
Psp124BI	GAGCTC	1 cut(s)	216
Psp5II	RGGWCCY	1 cut(s)	572
Psp6I	CCWGG	1 cut(s)	580
PspGI	CCWGG	1 cut(s)	580
PspN4I	GGNNCC	2 cut(s)	39, 469
PspPI	GGNCC	1 cut(s)	572
PspPPI	RGGWCCY	1 cut(s)	572
PstNI	CAGNNNCTG	1 cut(s)	203
PsuI	RGATCY	1 cut(s)	467
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
SacI	GAGCTC	1 cut(s)	216
SaqAI	TTAA	3 cut(s)	452, 588, 645
SatI	GCNGC	2 cut(s)	26, 29
Sau3AI	GATC	3 cut(s)	348, 361, 467
Sau96I	GGNCC	1 cut(s)	572
ScrFI	CCNGG	1 cut(s)	582
SduI	GDGCHC	1 cut(s)	216
SfaNI	GCATC	1 cut(s)	663
SfcI	CTRYAG	1 cut(s)	204
SfuI	TTCGAA	1 cut(s)	177
SinI	GGWCC	1 cut(s)	572
SpeI	ACTAGT	1 cut(s)	271
Sse9I	AATT	6 cut(s)	180, 340, 366, 371, 659, 680
SsiI	CCGC	2 cut(s)	25, 28
SspMI	CTAG	3 cut(s)	122, 272, 700
SstI	GAGCTC	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	580
StyI	CCWWGG	2 cut(s)	263, 627
TaaI	ACNGT	2 cut(s)	205, 433
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	3 cut(s)	162, 177, 513
TasI	AATT	6 cut(s)	180, 340, 366, 371, 659, 680
TauI	GCSGC	2 cut(s)	28, 31
TfiI	GAWTC	2 cut(s)	259, 696
Tru1I	TTAA	3 cut(s)	452, 588, 645
Tru9I	TTAA	3 cut(s)	452, 588, 645
TscAI	CASTG	1 cut(s)	478
TseFI	GTSAC	2 cut(s)	43, 267
Tsp45I	GTSAC	2 cut(s)	43, 267
TspDTI	ATGAA	2 cut(s)	173, 364
TspGWI	ACGGA	3 cut(s)	97, 117, 139
TspRI	CASTG	1 cut(s)	478
VpaK11BI	GGWCC	1 cut(s)	572
XapI	RAATTY	4 cut(s)	180, 340, 371, 680
XceI	RCATGY	1 cut(s)	403
XspI	CTAG	3 cut(s)	122, 272, 700
ZraI	GACGTC	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.