Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8494963.1

Orthogroup ID

OG0001642

Physical Location & Seq

Genomic Coordinates Reverse (-)

904 .. 2136

Gene Structure 1233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8494963.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atggagttcgagtggcaacaggttcttacagggagcacagaagcaacgacattggaggccagcaaaaaccccatgaggagacaagtccaaacaccatcaaggcctgctagatctttgggtaatcttcctcgtgttctgaggcgtggtgcggataattctggagctgatacaaatggaaatggttttgatttcaccacaaagttgctacatcttgcatggcatcctactgagaattcacttgcatctagcgatgtgaagctgcatccttataacctctgcaaaccattacctaactgtgcgacatcaggaaacctttctgctgatacaaattttttcaacaagaagaaattagtctcaaattcaggcgctacattgctgtttatgctatatcataaagcggatggtttgtccaaattatgtaccattagtggaagagatgtgatattagctcacctgcctactgtgaaagagaactgggttgttattgctgctacagtggaaagcagtcaggtcctatcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000159 GO:0000278 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008287 GO:0009987 GO:0010921 GO:0016311 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0032502 GO:0032991 GO:0035303 GO:0035304 GO:0036211 GO:0043170 GO:0043412 GO:0043666 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0060255 GO:0065007 GO:0065009 GO:0070262 GO:0071704 GO:0080090 GO:0098772 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04151 ko04152 ko04261 ko04390 ko04391 ko04530 ko04728 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04151 map04152 map04261 map04390 map04391 map04530 map04728 map05142 map05160 map05165

Pfam Domains

Protein Families

WD40

Protein Analysis

173

Amino Acids

18.9

Weight (kDa)

9.1

Isoelectric Point (pI)

24.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17720 AT1G17720 AT1G51690 AT1G51690 AT1G51690 AT1G51690 AT1G51690
fragaria_vesca	FvH4_2g32090 FvH4_2g32090 FvH4_2g32090 FvH4_2g32090 FvH4_2g32090 FvH4_2g32090 FvH4_6g33020 FvH4_6g33020 FvH4_6g33020 FvH4_6g33020
malus_domestica	MD08G1043800.v1.1 MD08G1043900.v1.1 MD08G1044000.v1.1 MD09G1195400.v1.1 MD15G1061300.v1.1 MD17G1176000.v1.1
prunus_persica	Prupe.1G414000_v2.0.a1 Prupe.1G414000_v2.0.a1 Prupe.3G052100_v2.0.a1 Prupe.3G052100_v2.0.a1
pyrus_communis	pycom08g03540 pycom15g05740 pycom17g18330
rosa_chinensis	RchiOBHm_Chr2g0142561 RchiOBHm_Chr6g0310651
rosa_laevigata	RLG00000010469 RLG00000019967
rosa_multiflora	Rmu_co8494963.1_g000001 Rmu_sc0000482.1_g000004 Rmu_sc0007390.1_g000003
rosa_roxburghii	Rroxscaffold_2G00102520 Rroxscaffold_7G00158380
rosa_rugosa	Rorug02G0373900 Rorug02G0374000 Rorug06G0381900 Rorug06G0381900 Rorug06G0381900
rosa_samantha	Rh2BG435300 Rh2DG445300 Rh6BG505400
rosa_wichuraiana	Rw2G034890 Rw6G043120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	270
AarI	CACCTGC	1 cut(s)	462
Acc36I	ACCTGC	1 cut(s)	462
AciI	CCGC	2 cut(s)	149, 398
AcsI	RAATTY	3 cut(s)	232, 328, 358
AfaI	GTAC	1 cut(s)	421
AgsI	TTSAA	1 cut(s)	337
AluBI	AGCT	3 cut(s)	164, 259, 449
AluI	AGCT	3 cut(s)	164, 259, 449
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	2 cut(s)	73, 358
AoxI	GGCC	2 cut(s)	57, 101
ApeKI	GCWGC	2 cut(s)	259, 488
ApoI	RAATTY	3 cut(s)	232, 328, 358
Asp700I	GAANNNNTTC	1 cut(s)	313
AspLEI	GCGC	1 cut(s)	368
AspS9I	GGNCC	1 cut(s)	511
AsuHPI	GGTGA	2 cut(s)	184, 443
AvaII	GGWCC	1 cut(s)	511
BauI	CACGAG	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	2 cut(s)	246, 475
BccI	CCATC	2 cut(s)	103, 395
BcoDI	GTCTC	2 cut(s)	73, 358
BfaI	CTAG	2 cut(s)	108, 246
BfmI	CTRYAG	1 cut(s)	492
BfoI	RGCGCY	1 cut(s)	369
BfuAI	ACCTGC	1 cut(s)	462
BglII	AGATCT	1 cut(s)	110
BisI	GCNGC	2 cut(s)	260, 489
BlsI	GCNGC	2 cut(s)	261, 490
Bme18I	GGWCC	1 cut(s)	511
BmgT120I	GGNCC	1 cut(s)	511
BmrI	ACTGGG	1 cut(s)	484
BmsI	GCATC	3 cut(s)	229, 251, 271
BmuI	ACTGGG	1 cut(s)	484
BpmI	CTGGAG	1 cut(s)	180
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	479
Bse3DI	GCAATG	1 cut(s)	371
BseGI	GGATG	3 cut(s)	220, 262, 406
BseMI	GCAATG	1 cut(s)	371
BseMII	CTCAG	2 cut(s)	128, 219
BseNI	ACTGG	1 cut(s)	479
BseRI	GAGGAG	1 cut(s)	91
BseXI	GCAGC	2 cut(s)	246, 475
BshFI	GGCC	2 cut(s)	59, 103
BsiHKAI	GWGCWC	1 cut(s)	38
BsmAI	GTCTC	2 cut(s)	73, 358
BsnI	GGCC	2 cut(s)	59, 103
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	110
BspACI	CCGC	2 cut(s)	149, 398
BspANI	GGCC	2 cut(s)	59, 103
BspCNI	CTCAG	2 cut(s)	129, 220
BspMI	ACCTGC	1 cut(s)	462
BsrDI	GCAATG	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	479
BssMI	GATC	1 cut(s)	110
BssSI	CACGAG	1 cut(s)	129
Bst2BI	CACGAG	1 cut(s)	129
Bst4CI	ACNGT	3 cut(s)	296, 463, 496
Bst6I	CTCTTC	1 cut(s)	427
BstC8I	GCNNGC	2 cut(s)	61, 105
BstDEI	CTNAG	2 cut(s)	137, 228
BstF5I	GGATG	3 cut(s)	220, 262, 406
BstH2I	RGCGCY	1 cut(s)	369
BstHHI	GCGC	1 cut(s)	368
BstKTI	GATC	1 cut(s)	113
BstMAI	GTCTC	2 cut(s)	73, 358
BstMBI	GATC	1 cut(s)	110
BstMWI	GCNNNNNNNGC	1 cut(s)	382
BstSFI	CTRYAG	1 cut(s)	492
BstV1I	GCAGC	2 cut(s)	246, 475
BstX2I	RGATCY	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	110
BsuRI	GGCC	2 cut(s)	59, 103
BtgZI	GCGATG	1 cut(s)	264
BtsCI	GGATG	3 cut(s)	220, 262, 406
BtsIMutI	CAGTG	1 cut(s)	501
BveI	ACCTGC	1 cut(s)	462
Cac8I	GCNNGC	2 cut(s)	61, 105
CfoI	GCGC	1 cut(s)	368
Cfr13I	GGNCC	1 cut(s)	511
Csp6I	GTAC	1 cut(s)	420
CviAII	CATG	2 cut(s)	73, 216
CviJI	RGCY	5 cut(s)	59, 103, 164, 259, 449
CviKI_1	RGCY	5 cut(s)	59, 103, 164, 259, 449
CviQI	GTAC	1 cut(s)	420
DdeI	CTNAG	2 cut(s)	137, 228
DpnI	GATC	1 cut(s)	112
DpnII	GATC	1 cut(s)	110
Eam1104I	CTCTTC	1 cut(s)	427
EarI	CTCTTC	1 cut(s)	427
Eco147I	AGGCCT	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	511
EcoO109I	RGGNCCY	1 cut(s)	511
EcoRI	GAATTC	1 cut(s)	232
FaeI	CATG	2 cut(s)	76, 219
FaiI	YATR	7 cut(s)	74, 217, 270, 383, 388, 393, 418
FatI	CATG	2 cut(s)	72, 215
Fnu4HI	GCNGC	2 cut(s)	260, 489
FokI	GGATG	3 cut(s)	207, 249, 413
Fsp4HI	GCNGC	2 cut(s)	260, 489
FspBI	CTAG	2 cut(s)	108, 246
GlaI	GCGC	1 cut(s)	367
GluI	GCNGC	2 cut(s)	260, 489
GsuI	CTGGAG	1 cut(s)	180
HaeII	RGCGCY	1 cut(s)	369
HaeIII	GGCC	2 cut(s)	59, 103
HhaI	GCGC	1 cut(s)	368
Hin1II	CATG	2 cut(s)	76, 219
Hin6I	GCGC	1 cut(s)	366
HinP1I	GCGC	1 cut(s)	366
HphI	GGTGA	2 cut(s)	184, 443
Hpy188I	TCNGA	1 cut(s)	138
Hpy188III	TCNNGA	3 cut(s)	159, 306, 519
HpyCH4III	ACNGT	3 cut(s)	296, 463, 496
HpyCH4V	TGCA	4 cut(s)	215, 242, 262, 279
HpyF10VI	GCNNNNNNNGC	1 cut(s)	382
HpyF3I	CTNAG	2 cut(s)	137, 228
Hsp92II	CATG	2 cut(s)	76, 219
HspAI	GCGC	1 cut(s)	366
Kzo9I	GATC	1 cut(s)	110
LmnI	GCTCC	2 cut(s)	33, 161
Lsp1109I	GCAGC	2 cut(s)	246, 475
LweI	GCATC	3 cut(s)	229, 251, 271
MaeI	CTAG	2 cut(s)	108, 246
MalI	GATC	1 cut(s)	112
MboI	GATC	1 cut(s)	110
MboII	GAAGA	3 cut(s)	116, 355, 444
MflI	RGATCY	1 cut(s)	110
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	6 cut(s)	154, 232, 328, 347, 358, 413
MnlI	CCTC	5 cut(s)	49, 69, 132, 138, 284
MroXI	GAANNNNTTC	1 cut(s)	313
MwoI	GCNNNNNNNGC	1 cut(s)	382
NdeII	GATC	1 cut(s)	110
NlaIII	CATG	2 cut(s)	76, 219
PaqCI	CACCTGC	1 cut(s)	462
PceI	AGGCCT	1 cut(s)	103
PdmI	GAANNNNTTC	1 cut(s)	313
PkrI	GCNGC	2 cut(s)	261, 490
PpuMI	RGGWCCY	1 cut(s)	511
PsiI	TTATAA	1 cut(s)	270
Psp5II	RGGWCCY	1 cut(s)	511
PspPI	GGNCC	1 cut(s)	511
PspPPI	RGGWCCY	1 cut(s)	511
PsuI	RGATCY	1 cut(s)	110
RsaI	GTAC	1 cut(s)	421
RsaNI	GTAC	1 cut(s)	420
SatI	GCNGC	2 cut(s)	260, 489
Sau3AI	GATC	1 cut(s)	110
Sau96I	GGNCC	1 cut(s)	511
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	9 cut(s)	24, 166, 261, 276, 292, 315, 451, 456, 513
SfaNI	GCATC	3 cut(s)	229, 251, 271
SfcI	CTRYAG	1 cut(s)	492
SinI	GGWCC	1 cut(s)	511
Sse9I	AATT	6 cut(s)	154, 232, 328, 347, 358, 413
SseBI	AGGCCT	1 cut(s)	103
SsiI	CCGC	2 cut(s)	149, 398
SspMI	CTAG	2 cut(s)	108, 246
StuI	AGGCCT	1 cut(s)	103
TaaI	ACNGT	3 cut(s)	296, 463, 496
TaqI	TCGA	1 cut(s)	9
TasI	AATT	6 cut(s)	154, 232, 328, 347, 358, 413
TscAI	CASTG	1 cut(s)	501
TseI	GCWGC	2 cut(s)	259, 488
TspRI	CASTG	1 cut(s)	501
VpaK11BI	GGWCC	1 cut(s)	511
XapI	RAATTY	3 cut(s)	232, 328, 358
XmnI	GAANNNNTTC	1 cut(s)	313
XspI	CTAG	2 cut(s)	108, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.