Rroxscaffold_7G00158380

phosphatase 2A 55 kDa regulatory subunit B

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
1855024 .. 1861073
6050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00158380.1

Sequence Viewer

Length: 1602 bp
ATGAACGGCGGCGGAGAGGGGCTCGCGGCTCCGGCGACGTCTGGAGCGGCGACGGCGACGGCGACGGCGCCGCTTGACTGGAAGTTTTCTCAGGTTTTCGGAGAACGGACCGCCGGCGAGGAAGTTCAGGAAGTTGATATAATATCTGCTATAGAATTCGACAGAACTGGGGACCACCTTGCCACTGGAGATCGTGGAGGGAGGGTGGTGTTATTTGAAAGAACTGATGCCAAGGAGAATGGTGCACATCGGAAAGATCTGGAAAGAATGGATTATTCCATGAGCAAGCATCCTGAGTTTCGATATAAAACTGAGTTCCAGAGTCATGAACCCGAGTTTGATTATCTGAAGAGCTTGGAAATCGAGGAAAAAATCAACAAGATTCGATGGTGTCAGACAGCTAATGGCGCACTGTTTCTTCTCTCGACTAATGACAAAACCATCAAATTCTGGAAGGTAGCAAAGACCGTTTCCATATGCAACGTTTTGATGATTTTCTTCCACATATTCCTTCAGTTACTTTTAAGGGCATTAGTTGCATTGCCTTCTCAATTTATAGCTTACTCCAATGCTGAGCAGGTCCAAGAGAAGAAGGTAAAGAAATTATCTGAGATGAATGTGGATCAGTCTAAATCTTCGGGGAATGGTCCAGTTGTTGACAGTACGCCAGAAATTTCCAAACCATATCTTGCAAATGGAGTGACCAGTCCTGAGACAAGTCTTCTGGCTAGATGTCGAAGAGTCTATGCCCATGCTCATGACTATCATATTAATTCCATTTCAAATAATAGTGATGGCGAAACTTTTATATCAGCCGATGACCTGCGAATTAATCTATGGAACTTAGAGATTAGCAGTCAAAGTTTCAATATCGTTGATGTGAAACCTACAAACATGGAGGATCTAACTGAGGTGATAACTTCAGCAGAATTCCACCCTACTCACTGTAACACATTGGCATACAGTAGCTCAAAAGGCTCAATTCGTCTTATTGATCTGCGGCAGTCAGCTTTATGTGACAATCATAGCAAATTGTTTGAAGAACAAGAAGCACCCGGTTCAAGATCTTTTTTCACTGAGATAATAGCCTCAATTTCAGATATTAAGTTTGCTAAGAATGGAAGACATATACTTAGCCGTGATTACATGACTCTTAAGCTGTGGGACATCAATATGGATTCTGGCCCAGTTGCCAGTTTCCAGGTTCATGAATATCTAAGACCTAAGCTGTGTGATTTGTATGAAAACGATTCTATCTTCGATAAATTTGAGTGCTGTCTAAGTGGAGATGGAGTTCGAGTGGCAACAGGTTCTTACAGCAATCTGTTTCGAGTGTTTGGTTGTTCTGAAGGGAGCACAGAAGCAACGACATTGGAGGCCAGCAAAAACCCCATGAGGAGACAAGTCCAAACACCATCAAGGCCTGCTAGATCTTTGGGTAATCTTCCTCGTGTTCTGAGGCGTGGTGCGGATAATTCTGGAGCTGATACAAATGGAAATGGTTTCGATTTCACGACAAAGTTGCTACATCTTGCATGGCATCCTACTGAGAATTCACTTGCATGTGCTGCTTCAAATAGCCTTTACATGTATTATGCGTAA

Protein Analysis

533

Amino Acids

59.45

Weight (kDa)

5.81

Isoelectric Point (pI)

44.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 41
Acc36I ACCTGC 2 cut(s) 568, 831
AccB1I GGYRCC 1 cut(s) 67
AccBSI CCGCTC 1 cut(s) 47
AccII CGCG 1 cut(s) 26
AciI CCGC 8 cut(s) 9, 12, 26, 47, 71, 111, 1000, 1469
AclI AACGTT 1 cut(s) 483
AclWI GGATC 2 cut(s) 630, 909
AcsI RAATTY 6 cut(s) 155, 446, 672, 929, 1265, 1552
AcuI CTGAAG 4 cut(s) 368, 497, 906, 1368
AcyI GRCGYC 2 cut(s) 38, 68
AfaI GTAC 1 cut(s) 664
AflII CTTAAG 1 cut(s) 1154
AflIII ACRYGT 1 cut(s) 1587
AgsI TTSAA 6 cut(s) 218, 783, 868, 1040, 1062, 1575
AjnI CCWGG 1 cut(s) 1200
AloI GAACNNNNNNTCC 2 cut(s) 1278, 1310
AluBI AGCT 8 cut(s) 354, 401, 560, 969, 1010, 1159, 1228, 1484
AluI AGCT 8 cut(s) 354, 401, 560, 969, 1010, 1159, 1228, 1484
Alw21I GWGCWC 2 cut(s) 247, 1358
Alw26I GTCTC 2 cut(s) 707, 1393
Alw44I GTGCAC 1 cut(s) 243
AlwI GGATC 2 cut(s) 630, 909
Ama87I CYCGRG 1 cut(s) 332
AoxI GGCC 3 cut(s) 1183, 1377, 1421
ApaLI GTGCAC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 1568
ApoI RAATTY 6 cut(s) 155, 446, 672, 929, 1265, 1552
AseI ATTAAT 2 cut(s) 771, 831
AspLEI GCGC 2 cut(s) 70, 410
AspS9I GGNCC 5 cut(s) 108, 172, 580, 647, 1184
AsuC2I CCSGG 1 cut(s) 1056
AsuHPI GGTGA 1 cut(s) 925
AvaI CYCGRG 1 cut(s) 332
AvaII GGWCC 4 cut(s) 108, 172, 580, 647
BaeGI GKGCMC 1 cut(s) 247
BanI GGYRCC 1 cut(s) 67
BanII GRGCYC 1 cut(s) 24
BauI CACGAG 1 cut(s) 1449
BbsI GAAGAC 2 cut(s) 713, 1129
Bbv12I GWGCWC 2 cut(s) 247, 1358
BbvI GCAGC 1 cut(s) 1555
BccI CCATC 5 cut(s) 381, 449, 788, 1283, 1423
BceAI ACGGC 5 cut(s) 22, 69, 75, 81, 1122
BcgI CGANNNNNNTGC 2 cut(s) 1504, 1538
BciT130I CCWGG 1 cut(s) 1202
BcnI CCSGG 1 cut(s) 1056
BcoDI GTCTC 2 cut(s) 707, 1393
BfaI CTAG 2 cut(s) 729, 1428
BfmI CTRYAG 1 cut(s) 150
BfoI RGCGCY 1 cut(s) 71
BfrI CTTAAG 1 cut(s) 1154
BfuAI ACCTGC 2 cut(s) 568, 831
BglII AGATCT 3 cut(s) 256, 1064, 1430
BisI GCNGC 6 cut(s) 10, 27, 48, 71, 1001, 1569
BlpI GCTNAGC 1 cut(s) 573
BlsI GCNGC 6 cut(s) 11, 28, 49, 72, 1002, 1570
Bme1390I CCNGG 2 cut(s) 1056, 1202
Bme18I GGWCC 4 cut(s) 108, 172, 580, 647
BmeT110I CYCGRG 1 cut(s) 332
BmgT120I GGNCC 5 cut(s) 108, 172, 580, 647, 1184
BmiI GGNNCC 3 cut(s) 30, 69, 173
BmrFI CCNGG 2 cut(s) 1056, 1202
BmrI ACTGGG 2 cut(s) 177, 1181
BmsI GCATC 3 cut(s) 217, 298, 1549
BmuI ACTGGG 2 cut(s) 177, 1181
BpiI GAAGAC 2 cut(s) 713, 1129
BplI GAGNNNNNCTC 1 cut(s) 38
BpmI CTGGAG 3 cut(s) 63, 207, 1500
Bpu10I CCTNAGC 1 cut(s) 1224
Bpu1102I GCTNAGC 1 cut(s) 573
BpuMI CCSGG 1 cut(s) 1056
BsaHI GRCGYC 2 cut(s) 38, 68
BsaJI CCNNGG 1 cut(s) 231
BsaXI ACNNNNNCTCC 6 cut(s) 189, 219, 1278, 1284, 1308, 1314
Bse118I RCCGGY 1 cut(s) 113
Bse1I ACTGG 7 cut(s) 83, 172, 190, 650, 705, 1187, 1194
Bse3DI GCAATG 1 cut(s) 539
BseBI CCWGG 1 cut(s) 1202
BseDI CCNNGG 1 cut(s) 231
BseGI GGATG 2 cut(s) 289, 1540
BseMI GCAATG 1 cut(s) 539
BseNI ACTGG 7 cut(s) 83, 172, 190, 650, 705, 1187, 1194
BseRI GAGGAG 1 cut(s) 1411
BseSI GKGCMC 1 cut(s) 247
BseXI GCAGC 1 cut(s) 1555
Bsh1236I CGCG 1 cut(s) 26
BshFI GGCC 3 cut(s) 1185, 1379, 1423
BshNI GGYRCC 1 cut(s) 67
BsiHKAI GWGCWC 2 cut(s) 247, 1358
BsiHKCI CYCGRG 1 cut(s) 332
BsiSI CCGG 3 cut(s) 32, 114, 1056
BslFI GGGAC 2 cut(s) 185, 1178
BsmAI GTCTC 2 cut(s) 707, 1393
BsmFI GGGAC 2 cut(s) 185, 1178
BsnI GGCC 3 cut(s) 1185, 1379, 1423
BsoBI CYCGRG 1 cut(s) 332
Bsp1286I GDGCHC 3 cut(s) 24, 247, 1358
Bsp143I GATC 7 cut(s) 190, 256, 622, 901, 994, 1064, 1430
Bsp1720I GCTNAGC 1 cut(s) 573
BspACI CCGC 8 cut(s) 9, 12, 26, 47, 71, 111, 1000, 1469
BspANI GGCC 3 cut(s) 1185, 1379, 1423
BspFNI CGCG 1 cut(s) 26
BspHI TCATGA 3 cut(s) 325, 757, 1207
BspLI GGNNCC 3 cut(s) 30, 69, 173
BspMI ACCTGC 2 cut(s) 568, 831
BspPI GGATC 2 cut(s) 630, 909
BspQI GCTCTTC 1 cut(s) 344
BspT107I GGYRCC 1 cut(s) 67
BspTI CTTAAG 1 cut(s) 1154
BsrBI CCGCTC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 539
BsrFI RCCGGY 1 cut(s) 113
BsrI ACTGG 7 cut(s) 83, 172, 190, 650, 705, 1187, 1194
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 7 cut(s) 190, 256, 622, 901, 994, 1064, 1430
BssNI GRCGYC 2 cut(s) 38, 68
BssSI CACGAG 1 cut(s) 1449
BssT1I CCWWGG 1 cut(s) 231
Bst2BI CACGAG 1 cut(s) 1449
Bst2UI CCWGG 1 cut(s) 1202
Bst4CI ACNGT 5 cut(s) 414, 469, 662, 947, 965
Bst6I CTCTTC 2 cut(s) 344, 733
BstACI GRCGYC 2 cut(s) 38, 68
BstAFI CTTAAG 1 cut(s) 1154
BstAPI GCANNNNNTGC 2 cut(s) 536, 1568
BstC8I GCNNGC 5 cut(s) 24, 115, 287, 1381, 1425
BstF5I GGATG 2 cut(s) 289, 1540
BstFNI CGCG 1 cut(s) 26
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 2 cut(s) 70, 410
BstKTI GATC 7 cut(s) 193, 259, 625, 904, 997, 1067, 1433
BstMAI GTCTC 2 cut(s) 707, 1393
BstMBI GATC 7 cut(s) 190, 256, 622, 901, 994, 1064, 1430
BstMWI GCNNNNNNNGC 6 cut(s) 32, 53, 407, 536, 975, 1568
BstNI CCWGG 1 cut(s) 1202
BstNSI RCATGY 2 cut(s) 1566, 1591
BstSCI CCNGG 2 cut(s) 1054, 1200
BstSFI CTRYAG 1 cut(s) 150
BstSLI GKGCMC 1 cut(s) 247
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 1 cut(s) 1555
BstV2I GAAGAC 2 cut(s) 713, 1129
BstX2I RGATCY 4 cut(s) 256, 901, 1064, 1430
BstYI RGATCY 4 cut(s) 256, 901, 1064, 1430
BsuRI GGCC 3 cut(s) 1185, 1379, 1423
BtsCI GGATG 2 cut(s) 289, 1540
BtsIMutI CAGTG 4 cut(s) 183, 410, 943, 1074
BveI ACCTGC 2 cut(s) 568, 831
Cac8I GCNNGC 5 cut(s) 24, 115, 287, 1381, 1425
CciI TCATGA 3 cut(s) 325, 757, 1207
CfoI GCGC 2 cut(s) 70, 410
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 5 cut(s) 108, 172, 580, 647, 1184
CpoI CGGWCCG 1 cut(s) 108
Csp6I GTAC 1 cut(s) 663
CspI CGGWCCG 1 cut(s) 108
CviQI GTAC 1 cut(s) 663
DinI GGCGCC 1 cut(s) 69
DpnI GATC 7 cut(s) 192, 258, 624, 903, 996, 1066, 1432
DpnII GATC 7 cut(s) 190, 256, 622, 901, 994, 1064, 1430
Eam1104I CTCTTC 2 cut(s) 344, 733
EarI CTCTTC 2 cut(s) 344, 733
EciI GGCGGA 1 cut(s) 27
Eco130I CCWWGG 1 cut(s) 231
Eco147I AGGCCT 1 cut(s) 1423
Eco24I GRGCYC 1 cut(s) 24
Eco47I GGWCC 4 cut(s) 108, 172, 580, 647
Eco57I CTGAAG 4 cut(s) 368, 497, 906, 1368
Eco88I CYCGRG 1 cut(s) 332
EcoRI GAATTC 3 cut(s) 155, 929, 1552
EcoRII CCWGG 1 cut(s) 1200
EcoT14I CCWWGG 1 cut(s) 231
EcoT38I GRGCYC 1 cut(s) 24
EgeI GGCGCC 1 cut(s) 69
EheI GGCGCC 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 231
FaqI GGGAC 2 cut(s) 185, 1178
FauNDI CATATG 1 cut(s) 476
Fnu4HI GCNGC 6 cut(s) 10, 27, 48, 71, 1001, 1569
FokI GGATG 2 cut(s) 276, 1527
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 6 cut(s) 10, 27, 48, 71, 1001, 1569
FspBI CTAG 2 cut(s) 729, 1428
GlaI GCGC 2 cut(s) 69, 409
GluI GCNGC 6 cut(s) 10, 27, 48, 71, 1001, 1569
GsuI CTGGAG 3 cut(s) 63, 207, 1500
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 3 cut(s) 1185, 1379, 1423
HapII CCGG 3 cut(s) 32, 114, 1056
HhaI GCGC 2 cut(s) 70, 410
Hin1I GRCGYC 2 cut(s) 38, 68
Hin6I GCGC 2 cut(s) 68, 408
HinP1I GCGC 2 cut(s) 68, 408
HincII GTYRAC 1 cut(s) 658
HindII GTYRAC 1 cut(s) 658
HinfI GANTC 6 cut(s) 322, 382, 741, 1150, 1178, 1250
HpaII CCGG 3 cut(s) 32, 114, 1056
HphI GGTGA 1 cut(s) 925
Hpy166II GTNNAC 2 cut(s) 245, 658
Hpy188I TCNGA 8 cut(s) 101, 252, 348, 396, 610, 1099, 1348, 1458
Hpy8I GTNNAC 2 cut(s) 245, 658
Hpy99I CGWCG 4 cut(s) 40, 55, 61, 67
HpyAV CCTTC 5 cut(s) 448, 521, 555, 586, 1343
HpyCH4III ACNGT 5 cut(s) 414, 469, 662, 947, 965
HpyCH4IV ACGT 2 cut(s) 38, 483
HpyCH4V TGCA 6 cut(s) 245, 480, 539, 692, 1535, 1562
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 53, 407, 536, 975, 1568
HpySE526I ACGT 2 cut(s) 38, 483
Hsp92I GRCGYC 2 cut(s) 38, 68
HspAI GCGC 2 cut(s) 68, 408
KasI GGCGCC 1 cut(s) 67
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
Kzo9I GATC 7 cut(s) 190, 256, 622, 901, 994, 1064, 1430
LguI GCTCTTC 1 cut(s) 344
LmnI GCTCC 4 cut(s) 34, 44, 1353, 1481
Lsp1109I GCAGC 1 cut(s) 1555
LweI GCATC 3 cut(s) 217, 298, 1549
MaeI CTAG 2 cut(s) 729, 1428
MaeII ACGT 2 cut(s) 38, 483
MaeIII GTNAC 4 cut(s) 516, 700, 947, 1016
MalI GATC 7 cut(s) 192, 258, 624, 903, 996, 1066, 1432
MbiI CCGCTC 1 cut(s) 47
MboI GATC 7 cut(s) 190, 256, 622, 901, 994, 1064, 1430
MflI RGATCY 4 cut(s) 256, 901, 1064, 1430
MhlI GDGCHC 3 cut(s) 24, 247, 1358
Mly113I GGCGCC 1 cut(s) 68
MlyI GAGTC 3 cut(s) 331, 750, 1144
MreI CGCCGGCG 1 cut(s) 113
MroNI GCCGGC 1 cut(s) 113
MseI TTAA 5 cut(s) 524, 771, 831, 1104, 1155
MslI CAYNNNNRTG 3 cut(s) 756, 1172, 1561
MspCI CTTAAG 1 cut(s) 1154
MspI CCGG 3 cut(s) 32, 114, 1056
MspR9I CCNGG 2 cut(s) 1056, 1202
MvaI CCWGG 1 cut(s) 1202
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 6 cut(s) 32, 53, 407, 536, 975, 1568
NaeI GCCGGC 1 cut(s) 115
NarI GGCGCC 1 cut(s) 68
NciI CCSGG 1 cut(s) 1056
NdeI CATATG 1 cut(s) 476
NdeII GATC 7 cut(s) 190, 256, 622, 901, 994, 1064, 1430
NgoMIV GCCGGC 1 cut(s) 113
NlaIV GGNNCC 3 cut(s) 30, 69, 173
NmuCI GTSAC 2 cut(s) 700, 1016
NspI RCATGY 2 cut(s) 1566, 1591
PagI TCATGA 3 cut(s) 325, 757, 1207
PceI AGGCCT 1 cut(s) 1423
PciI ACATGT 1 cut(s) 1587
PciSI GCTCTTC 1 cut(s) 344
PcsI WCGNNNNNNNCGW 1 cut(s) 59
PdiI GCCGGC 1 cut(s) 115
PfeI GAWTC 3 cut(s) 382, 1178, 1250
PkrI GCNGC 6 cut(s) 11, 28, 49, 72, 1002, 1570
PleI GAGTC 3 cut(s) 330, 749, 1144
PluTI GGCGCC 1 cut(s) 71
PpsI GAGTC 3 cut(s) 330, 749, 1144
PscI ACATGT 1 cut(s) 1587
PshBI ATTAAT 2 cut(s) 771, 831
Psp1406I AACGTT 1 cut(s) 483
Psp6I CCWGG 1 cut(s) 1200
PspGI CCWGG 1 cut(s) 1200
PspN4I GGNNCC 3 cut(s) 30, 69, 173
PspPI GGNCC 5 cut(s) 108, 172, 580, 647, 1184
PsuI RGATCY 4 cut(s) 256, 901, 1064, 1430
RsaI GTAC 1 cut(s) 664
RsaNI GTAC 1 cut(s) 663
RseI CAYNNNNRTG 3 cut(s) 756, 1172, 1561
Rsr2I CGGWCCG 1 cut(s) 108
RsrII CGGWCCG 1 cut(s) 108
SapI GCTCTTC 1 cut(s) 344
SaqAI TTAA 5 cut(s) 524, 771, 831, 1104, 1155
SatI GCNGC 6 cut(s) 10, 27, 48, 71, 1001, 1569
Sau3AI GATC 7 cut(s) 190, 256, 622, 901, 994, 1064, 1430
Sau96I GGNCC 5 cut(s) 108, 172, 580, 647, 1184
SchI GAGTC 3 cut(s) 331, 750, 1144
ScrFI CCNGG 2 cut(s) 1056, 1202
SduI GDGCHC 3 cut(s) 24, 247, 1358
SfaNI GCATC 3 cut(s) 217, 298, 1549
SfcI CTRYAG 1 cut(s) 150
SfoI GGCGCC 1 cut(s) 69
SgrAI CRCCGGYG 1 cut(s) 113
SinI GGWCC 4 cut(s) 108, 172, 580, 647
SmiMI CAYNNNNRTG 3 cut(s) 756, 1172, 1561
SmlI CTYRAG 1 cut(s) 1154
SmoI CTYRAG 1 cut(s) 1154
SseBI AGGCCT 1 cut(s) 1423
SsiI CCGC 8 cut(s) 9, 12, 26, 47, 71, 111, 1000, 1469
SspDI GGCGCC 1 cut(s) 67
SspMI CTAG 2 cut(s) 729, 1428
StuI AGGCCT 1 cut(s) 1423
StyD4I CCNGG 2 cut(s) 1054, 1200
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 5 cut(s) 414, 469, 662, 947, 965
TaiI ACGT 2 cut(s) 41, 486
TauI GCSGC 5 cut(s) 12, 29, 50, 73, 1003
TfiI GAWTC 3 cut(s) 382, 1178, 1250
Tru1I TTAA 5 cut(s) 524, 771, 831, 1104, 1155
Tru9I TTAA 5 cut(s) 524, 771, 831, 1104, 1155
TscAI CASTG 4 cut(s) 190, 417, 950, 1081
TseFI GTSAC 2 cut(s) 700, 1016
TseI GCWGC 1 cut(s) 1568
Tsp45I GTSAC 2 cut(s) 700, 1016
TspDTI ATGAA 6 cut(s) 17, 342, 629, 1196, 1224, 1257
TspGWI ACGGA 1 cut(s) 121
TspRI CASTG 4 cut(s) 190, 417, 950, 1081
Vha464I CTTAAG 1 cut(s) 1154
VneI GTGCAC 1 cut(s) 243
VpaK11BI GGWCC 4 cut(s) 108, 172, 580, 647
VspI ATTAAT 2 cut(s) 771, 831
XapI RAATTY 6 cut(s) 155, 446, 672, 929, 1265, 1552
XceI RCATGY 2 cut(s) 1566, 1591
XcmI CCANNNNNNNNNTGG 1 cut(s) 182
XspI CTAG 2 cut(s) 729, 1428
ZraI GACGTC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.