Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011275

Physical Location & Seq

Genomic Coordinates Forward (+)

6177481 .. 6179289

Gene Structure 1809 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G17950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGATGTGTAGTCGAGGCCATTGGAGACCTGCAGAAGACGAGAAGCTAAGAGAACTCGTCGAACAATTTGGTCCTCATAATTGGAACGCCATAGCTCAGAAGCTCTCTGGTCGATCTGGTAAGAGTTGTAGATTGAGATGGTTTAATCAATTGGATCCTAGGATTAACCGAAACCCTTTCACGGAGGAAGAAGAAGAAAGGCTTTTAGCGTCTCATCGGATCCATGGGAACAGATGGTCTGTGATCGCTAGATTTTTTCCCGGTCGAACTGATAACGCTGTTAAAAACCATTGGCACGTCATCATGGCTCGTCGTGGCCGAGAACGGTCCAAGCTCCGTCCACGAGGCCTTGGCCATGATGGCACGGTGGCTGCGACTGGGATGATTGGTAATTATAAAGACTGCGATAAGGAGAGAAGATTGGCAACCACAACCGCTATCAATTTTCCTTATCAATTCTCTCATATTAATCATTTTCAAGTCCTCAAAGAGTTCTTGACCGGAAAGATCGGGTTCAGAAATAGTACTACTCCAATACAAGAAGGAGCAATAGACCAAACTAAACGACCGATGGAGTTCTACAATTTTCTTCAAGTAAACACGGATTCGAAGATACACGAATTGATAGATAATTCAAGAAAAGACGAAGAAGAAGATGTCGATCAAAACAACCGAATTCCTAACGAGAATTGTGTTCCATTTTTCGACTTTTTGTCTGTTGGAAACTCTGCCTCTCAGGGTTTATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009832 GO:0009834 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901347 GO:1901348 GO:1901363 GO:1901700 GO:1902074 GO:1903338 GO:1903339 GO:1903340 GO:1903506 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

249

Amino Acids

28.93

Weight (kDa)

9.02

Isoelectric Point (pI)

45.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	5 - 51	8.2e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	8 - 68	1.8e-18	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	57 - 99	8.1e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	60 - 104	1.2e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17950 AT1G73410 AT1G73410
fragaria_vesca	FvH4_5g17970
malus_domestica	MD06G1235300.v1.1 MD14G1242300.v1.1
prunus_persica	Prupe.5G240000_v2.0.a1
pyrus_communis	pycom06g21020 pycom14g20370
rosa_chinensis	RchiOBHm_Chr7g0177631
rosa_laevigata	RLG00000005518
rosa_multiflora	Rmu_ssc0000330.1_g000016
rosa_roxburghii	Rroxscaffold_3G00275710
rosa_rugosa	Rorug06G0408100 Rorug06G0408200
rosa_samantha	Rh7AG007400 Rh7BG007400 Rh7CG007900 Rh7DG007600
rosa_wichuraiana	Rw7G000630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	396
Acc36I	ACCTGC	1 cut(s)	37
AciI	CCGC	1 cut(s)	435
AclWI	GGATC	4 cut(s)	149, 162, 214, 227
AcoI	YGGCCR	2 cut(s)	316, 352
AcsI	RAATTY	1 cut(s)	675
AfaI	GTAC	1 cut(s)	526
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	3 cut(s)	479, 593, 636
AhdI	GACNNNNNGTC	1 cut(s)	712
AjiI	CACGTC	1 cut(s)	298
AluBI	AGCT	4 cut(s)	46, 95, 103, 334
AluI	AGCT	4 cut(s)	46, 95, 103, 334
Alw26I	GTCTC	2 cut(s)	19, 216
AlwI	GGATC	4 cut(s)	149, 162, 214, 227
AoxI	GGCC	4 cut(s)	16, 316, 346, 352
ApeKI	GCWGC	1 cut(s)	371
ApoI	RAATTY	1 cut(s)	675
AseI	ATTAAT	1 cut(s)	468
AspA2I	CCTAGG	1 cut(s)	158
AspS9I	GGNCC	2 cut(s)	71, 327
AsuC2I	CCSGG	1 cut(s)	261
AsuII	TTCGAA	1 cut(s)	608
AvaII	GGWCC	2 cut(s)	71, 327
AvrII	CCTAGG	1 cut(s)	158
BalI	TGGCCA	1 cut(s)	354
BamHI	GGATCC	2 cut(s)	154, 219
BauI	CACGAG	1 cut(s)	342
BbsI	GAAGAC	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	358
BccI	CCATC	4 cut(s)	132, 228, 353, 565
BcnI	CCSGG	1 cut(s)	261
BcoDI	GTCTC	2 cut(s)	19, 216
BfaI	CTAG	2 cut(s)	159, 249
BfmI	CTRYAG	1 cut(s)	30
BfuAI	ACCTGC	1 cut(s)	37
BglI	GCCNNNNNGGC	1 cut(s)	360
BisI	GCNGC	1 cut(s)	372
BlnI	CCTAGG	1 cut(s)	158
BlsI	GCNGC	1 cut(s)	373
BmcAI	AGTACT	1 cut(s)	526
Bme1390I	CCNGG	1 cut(s)	261
Bme18I	GGWCC	2 cut(s)	71, 327
BmeRI	GACNNNNNGTC	1 cut(s)	712
BmgBI	CACGTC	1 cut(s)	298
BmgT120I	GGNCC	2 cut(s)	71, 327
BmiI	GGNNCC	2 cut(s)	156, 221
BmrFI	CCNGG	1 cut(s)	261
BmrI	ACTGGG	1 cut(s)	387
BmuI	ACTGGG	1 cut(s)	387
BpiI	GAAGAC	1 cut(s)	42
Bpu14I	TTCGAA	1 cut(s)	608
BpuMI	CCSGG	1 cut(s)	261
BsaBI	GATNNNNATC	1 cut(s)	660
BsaI	GGTCTC	1 cut(s)	19
BsaJI	CCNNGG	3 cut(s)	158, 223, 349
BsaWI	WCCGGW	1 cut(s)	500
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse1I	ACTGG	1 cut(s)	382
Bse8I	GATNNNNATC	1 cut(s)	660
BseDI	CCNNGG	3 cut(s)	158, 223, 349
BseGI	GGATG	1 cut(s)	387
BseJI	GATNNNNATC	1 cut(s)	660
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	2 cut(s)	110, 749
BseNI	ACTGG	1 cut(s)	382
BseXI	GCAGC	1 cut(s)	358
Bsh1285I	CGRYCG	2 cut(s)	265, 569
BshFI	GGCC	4 cut(s)	18, 318, 348, 354
BsiEI	CGRYCG	2 cut(s)	265, 569
BsiSI	CCGG	2 cut(s)	261, 501
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	2 cut(s)	19, 216
BsmBI	CGTCTC	1 cut(s)	216
BsnI	GGCC	4 cut(s)	18, 318, 348, 354
Bso31I	GGTCTC	1 cut(s)	19
Bsp119I	TTCGAA	1 cut(s)	608
Bsp143I	GATC	6 cut(s)	113, 154, 219, 243, 507, 661
Bsp19I	CCATGG	1 cut(s)	223
BspACI	CCGC	1 cut(s)	435
BspANI	GGCC	4 cut(s)	18, 318, 348, 354
BspCNI	CTCAG	2 cut(s)	109, 748
BspLI	GGNNCC	2 cut(s)	156, 221
BspMAI	CTGCAG	1 cut(s)	34
BspMI	ACCTGC	1 cut(s)	37
BspPI	GGATC	4 cut(s)	149, 162, 214, 227
BspT104I	TTCGAA	1 cut(s)	608
BspTNI	GGTCTC	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	382
BssECI	CCNNGG	3 cut(s)	158, 223, 349
BssMI	GATC	6 cut(s)	113, 154, 219, 243, 507, 661
BssSI	CACGAG	1 cut(s)	342
BssT1I	CCWWGG	3 cut(s)	158, 223, 349
Bst2BI	CACGAG	1 cut(s)	342
Bst4CI	ACNGT	2 cut(s)	327, 367
BstBI	TTCGAA	1 cut(s)	608
BstDEI	CTNAG	3 cut(s)	47, 96, 735
BstDSI	CCRYGG	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	387
BstKTI	GATC	6 cut(s)	116, 157, 222, 246, 510, 664
BstMAI	GTCTC	2 cut(s)	19, 216
BstMBI	GATC	6 cut(s)	113, 154, 219, 243, 507, 661
BstMCI	CGRYCG	2 cut(s)	265, 569
BstMWI	GCNNNNNNNGC	1 cut(s)	360
BstSCI	CCNGG	1 cut(s)	259
BstSFI	CTRYAG	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	358
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	2 cut(s)	154, 219
BstYI	RGATCY	2 cut(s)	154, 219
BsuRI	GGCC	4 cut(s)	18, 318, 348, 354
BtgI	CCRYGG	1 cut(s)	223
BtrI	CACGTC	1 cut(s)	298
BtsCI	GGATG	1 cut(s)	387
BveI	ACCTGC	1 cut(s)	37
Cfr13I	GGNCC	2 cut(s)	71, 327
CseI	GACGC	1 cut(s)	198
Csp6I	GTAC	1 cut(s)	525
CviAII	CATG	3 cut(s)	224, 304, 356
CviQI	GTAC	1 cut(s)	525
DdeI	CTNAG	3 cut(s)	47, 96, 735
DpnI	GATC	6 cut(s)	115, 156, 221, 245, 509, 663
DpnII	GATC	6 cut(s)	113, 154, 219, 243, 507, 661
DriI	GACNNNNNGTC	1 cut(s)	712
EaeI	YGGCCR	2 cut(s)	316, 352
Eam1105I	GACNNNNNGTC	1 cut(s)	712
Eco130I	CCWWGG	3 cut(s)	158, 223, 349
Eco147I	AGGCCT	1 cut(s)	348
Eco31I	GGTCTC	1 cut(s)	19
Eco47I	GGWCC	2 cut(s)	71, 327
EcoRI	GAATTC	1 cut(s)	675
EcoT14I	CCWWGG	3 cut(s)	158, 223, 349
ErhI	CCWWGG	3 cut(s)	158, 223, 349
Esp3I	CGTCTC	1 cut(s)	216
FaeI	CATG	3 cut(s)	227, 307, 359
FaiI	YATR	8 cut(s)	78, 92, 225, 305, 357, 396, 465, 745
FalI	AAGNNNNNCTT	2 cut(s)	186, 218
FatI	CATG	3 cut(s)	223, 303, 355
Fnu4HI	GCNGC	1 cut(s)	372
FokI	GGATG	1 cut(s)	394
Fsp4HI	GCNGC	1 cut(s)	372
FspBI	CTAG	2 cut(s)	159, 249
GluI	GCNGC	1 cut(s)	372
HaeIII	GGCC	4 cut(s)	18, 318, 348, 354
HapII	CCGG	2 cut(s)	261, 501
HgaI	GACGC	1 cut(s)	198
Hin1II	CATG	3 cut(s)	227, 307, 359
HinfI	GANTC	1 cut(s)	605
HpaII	CCGG	2 cut(s)	261, 501
Hpy166II	GTNNAC	2 cut(s)	341, 598
Hpy188I	TCNGA	3 cut(s)	99, 219, 518
Hpy188III	TCNNGA	2 cut(s)	496, 636
Hpy8I	GTNNAC	2 cut(s)	341, 598
Hpy99I	CGWCG	2 cut(s)	62, 315
HpyAV	CCTTC	1 cut(s)	536
HpyCH4III	ACNGT	2 cut(s)	327, 367
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	1 cut(s)	32
HpyF10VI	GCNNNNNNNGC	1 cut(s)	360
HpyF3I	CTNAG	3 cut(s)	47, 96, 735
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	3 cut(s)	227, 307, 359
Kzo9I	GATC	6 cut(s)	113, 154, 219, 243, 507, 661
LmnI	GCTCC	2 cut(s)	339, 545
LpnPI	CCDG	7 cut(s)	42, 93, 102, 274, 363, 514, 722
Lsp1109I	GCAGC	1 cut(s)	358
MaeI	CTAG	2 cut(s)	159, 249
MaeII	ACGT	1 cut(s)	297
MalI	GATC	6 cut(s)	115, 156, 221, 245, 509, 663
MboI	GATC	6 cut(s)	113, 154, 219, 243, 507, 661
MfeI	CAATTG	1 cut(s)	149
MflI	RGATCY	2 cut(s)	154, 219
MlsI	TGGCCA	1 cut(s)	354
MluNI	TGGCCA	1 cut(s)	354
MmeI	TCCRAC	1 cut(s)	700
MnlI	CCTC	6 cut(s)	8, 84, 178, 338, 494, 742
Mox20I	TGGCCA	1 cut(s)	354
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	5 cut(s)	144, 165, 282, 468, 748
Msp20I	TGGCCA	1 cut(s)	354
MspI	CCGG	2 cut(s)	261, 501
MspR9I	CCNGG	1 cut(s)	261
MunI	CAATTG	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	360
NciI	CCSGG	1 cut(s)	261
NcoI	CCATGG	1 cut(s)	223
NdeII	GATC	6 cut(s)	113, 154, 219, 243, 507, 661
NlaIII	CATG	3 cut(s)	227, 307, 359
NlaIV	GGNNCC	2 cut(s)	156, 221
NmeAIII	GCCGAG	1 cut(s)	344
NspV	TTCGAA	1 cut(s)	608
PceI	AGGCCT	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	2 cut(s)	316, 371
PfeI	GAWTC	1 cut(s)	605
PkrI	GCNGC	1 cut(s)	373
PshBI	ATTAAT	1 cut(s)	468
PsiI	TTATAA	1 cut(s)	396
PspN4I	GGNNCC	2 cut(s)	156, 221
PspPI	GGNCC	2 cut(s)	71, 327
PstI	CTGCAG	1 cut(s)	34
PsuI	RGATCY	2 cut(s)	154, 219
RsaI	GTAC	1 cut(s)	526
RsaNI	GTAC	1 cut(s)	525
SaqAI	TTAA	5 cut(s)	144, 165, 282, 468, 748
SatI	GCNGC	1 cut(s)	372
Sau3AI	GATC	6 cut(s)	113, 154, 219, 243, 507, 661
Sau96I	GGNCC	2 cut(s)	71, 327
ScaI	AGTACT	1 cut(s)	526
ScrFI	CCNGG	1 cut(s)	261
SetI	ASST	6 cut(s)	31, 48, 97, 105, 300, 336
SfcI	CTRYAG	1 cut(s)	30
SfuI	TTCGAA	1 cut(s)	608
SinI	GGWCC	2 cut(s)	71, 327
SseBI	AGGCCT	1 cut(s)	348
SsiI	CCGC	1 cut(s)	435
SspMI	CTAG	2 cut(s)	159, 249
StuI	AGGCCT	1 cut(s)	348
StyD4I	CCNGG	1 cut(s)	259
StyI	CCWWGG	3 cut(s)	158, 223, 349
TaaI	ACNGT	2 cut(s)	327, 367
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	7 cut(s)	13, 60, 112, 265, 608, 660, 705
TaqII	GACCGA	1 cut(s)	583
TatI	WGTACW	1 cut(s)	524
TfiI	GAWTC	1 cut(s)	605
Tru1I	TTAA	5 cut(s)	144, 165, 282, 468, 748
Tru9I	TTAA	5 cut(s)	144, 165, 282, 468, 748
TseI	GCWGC	1 cut(s)	371
TspGWI	ACGGA	3 cut(s)	197, 326, 617
VpaK11BI	GGWCC	2 cut(s)	71, 327
VspI	ATTAAT	1 cut(s)	468
XapI	RAATTY	1 cut(s)	675
XmaJI	CCTAGG	1 cut(s)	158
XspI	CTAG	2 cut(s)	159, 249
ZrmI	AGTACT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.