FvH4_5g17970
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011275
Physical Location & Seq
Reverse (-)
10317613 .. 10320193
2581 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g17970.t1

Sequence Viewer

Length: 834 bp
ATGTGCAACAGTACAAGAGGTCACTGGAGGCCAGCTGAAGACGAGAAGCTTAGGGAGTTGGTGGAACGATATGGACCTCATAACTGGAACGCAATTGCAGAAAAGCTCCAAGGAAGATCAGGAAAGAGCTGTAGGTTAAGGTGGTTCAATCAGTTAGACCCCAGAATCAACAGAAACCCTTTTAGCGAAGAGGAAGAAGAGCGGCTCCTAGCTTCTCATCGCATCCATGGAAATAGATGGGCTGTTATTGCAAGGCTTTTTCCCGGACGCACCGACAATGCAGTCAAGAACCATTGGCATGTCATTATGGCTCGCAGAGGAAGAGAGAGGTCCAGGCTTCACCATCATCTTCATGCAAAAAGGATGAATAGGACTACTACTAATGCTACTCCTCCTCATCAAGTCATCAATCATAATGAAATACCAAAAACCTCTTCAAATTATAAACAAGACTTGCAGATGATCCTCAGTTGTCGACACGAGACGATGAATGACAGTTCTTATATTGGAAATTACTGCAGTGCTACTGAAAGAAAATTTCATTATCATCCTGCTGCATTTACTCATAATACTACTCTAGCTCCTGTAATTCCAAACAAATATCATCAGTTTTATCCCAATACCATGCACCAAGATAAAAATCATGAGTCAGTTGAGTTTTATGATTTTCTCCAAGTGAACACTGAGTCTAACAGAAGTGAAGTGATAGACATCAATACAAGAAAGGATGAAGAGGAGGTTGATCAGCTGGAAGCTATCAGACAGCAGGAACATACCAAGGCAGCCGGTGCTCCTTTCATAGATTTCTTCTCTGGTGGAAGTGTTACTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009832 GO:0009834 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042546 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901347 GO:1901348 GO:1901363 GO:1901698 GO:1901700 GO:1902074 GO:1903338 GO:1903339 GO:1903340 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2000652 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

278

Amino Acids

32.51

Weight (kDa)

8.86

Isoelectric Point (pI)

61.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 6 - 52 3e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 9 - 69 6.7e-19 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 58 - 100 1.8e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 61 - 105 2.2e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011275)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17950 AT1G73410 AT1G73410
fragaria_vesca FvH4_5g17970
malus_domestica MD06G1235300.v1.1 MD14G1242300.v1.1
prunus_persica Prupe.5G240000_v2.0.a1
pyrus_communis pycom06g21020 pycom14g20370
rosa_chinensis RchiOBHm_Chr7g0177631
rosa_laevigata RLG00000005518
rosa_multiflora Rmu_ssc0000330.1_g000016
rosa_roxburghii Rroxscaffold_3G00275710
rosa_rugosa Rorug06G0408100 Rorug06G0408200
rosa_samantha Rh7AG007400 Rh7BG007400 Rh7CG007900 Rh7DG007600
rosa_wichuraiana Rw7G000630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 444
AasI GACNNNNNNGTC 1 cut(s) 281
AccBSI CCGCTC 1 cut(s) 202
AccI GTMKAC 1 cut(s) 475
AciI CCGC 1 cut(s) 202
AclWI GGATC 1 cut(s) 457
AcsI RAATTY 1 cut(s) 536
AcuI CTGAAG 1 cut(s) 57
AfaI GTAC 1 cut(s) 13
AgsI TTSAA 2 cut(s) 148, 438
AjnI CCWGG 1 cut(s) 332
AjuI GAANNNNNNNTTGG 2 cut(s) 418, 450
AluBI AGCT 9 cut(s) 35, 49, 106, 129, 212, 581, 748, 755, 831
AluI AGCT 9 cut(s) 35, 49, 106, 129, 212, 581, 748, 755, 831
Alw21I GWGCWC 1 cut(s) 793
Alw26I GTCTC 1 cut(s) 476
AlwI GGATC 1 cut(s) 457
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 2 cut(s) 554, 782
ApoI RAATTY 1 cut(s) 536
AspS9I GGNCC 2 cut(s) 74, 330
AsuC2I CCSGG 1 cut(s) 264
AsuHPI GGTGA 1 cut(s) 332
AvaII GGWCC 2 cut(s) 74, 330
BauI CACGAG 1 cut(s) 479
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 793
BbvI GCAGC 2 cut(s) 541, 794
BccI CCATC 2 cut(s) 231, 351
BciT130I CCWGG 1 cut(s) 334
BclI TGATCA 1 cut(s) 742
BcnI CCSGG 1 cut(s) 264
BcoDI GTCTC 1 cut(s) 476
BfaI CTAG 3 cut(s) 209, 578, 828
BfmI CTRYAG 2 cut(s) 130, 517
BisI GCNGC 3 cut(s) 203, 555, 783
BlsI GCNGC 3 cut(s) 204, 556, 784
Bme1390I CCNGG 2 cut(s) 264, 334
Bme18I GGWCC 2 cut(s) 74, 330
BmgT120I GGNCC 2 cut(s) 74, 330
BmiI GGNNCC 1 cut(s) 206
BmrFI CCNGG 2 cut(s) 264, 334
BmsI GCATC 1 cut(s) 231
BpiI GAAGAC 1 cut(s) 45
BpmI CTGGAG 1 cut(s) 46
Bpu10I CCTNAGC 1 cut(s) 50
BpuMI CCSGG 1 cut(s) 264
BsaBI GATNNNNATC 2 cut(s) 639, 710
BsaJI CCNNGG 3 cut(s) 109, 226, 777
BsaXI ACNNNNNCTCC 2 cut(s) 565, 595
Bse118I RCCGGY 1 cut(s) 785
Bse1I ACTGG 2 cut(s) 29, 89
Bse8I GATNNNNATC 2 cut(s) 639, 710
BseBI CCWGG 1 cut(s) 334
BseDI CCNNGG 3 cut(s) 109, 226, 777
BseGI GGATG 4 cut(s) 222, 369, 547, 733
BseJI GATNNNNATC 2 cut(s) 639, 710
BseMII CTCAG 2 cut(s) 481, 675
BseNI ACTGG 2 cut(s) 29, 89
BseRI GAGGAG 3 cut(s) 381, 384, 749
BseXI GCAGC 2 cut(s) 541, 794
BshFI GGCC 1 cut(s) 31
BsiHKAI GWGCWC 1 cut(s) 793
BsiSI CCGG 2 cut(s) 264, 786
BsmAI GTCTC 1 cut(s) 476
BsmBI CGTCTC 1 cut(s) 476
BsnI GGCC 1 cut(s) 31
Bsp1286I GDGCHC 1 cut(s) 793
Bsp143I GATC 3 cut(s) 116, 462, 742
Bsp19I CCATGG 1 cut(s) 226
BspACI CCGC 1 cut(s) 202
BspANI GGCC 1 cut(s) 31
BspCNI CTCAG 2 cut(s) 480, 676
BspHI TCATGA 1 cut(s) 643
BspLI GGNNCC 1 cut(s) 206
BspMAI CTGCAG 1 cut(s) 521
BspPI GGATC 1 cut(s) 457
BspQI GCTCTTC 1 cut(s) 192
BsrBI CCGCTC 1 cut(s) 202
BsrFI RCCGGY 1 cut(s) 785
BsrI ACTGG 2 cut(s) 29, 89
BssAI RCCGGY 1 cut(s) 785
BssECI CCNNGG 3 cut(s) 109, 226, 777
BssMI GATC 3 cut(s) 116, 462, 742
BssSI CACGAG 1 cut(s) 479
BssT1I CCWWGG 3 cut(s) 109, 226, 777
Bst2BI CACGAG 1 cut(s) 479
Bst2UI CCWGG 1 cut(s) 334
Bst4CI ACNGT 2 cut(s) 11, 497
Bst6I CTCTTC 5 cut(s) 183, 192, 316, 439, 726
BstAPI GCANNNNNTGC 1 cut(s) 788
BstC8I GCNNGC 2 cut(s) 33, 313
BstDEI CTNAG 3 cut(s) 50, 467, 684
BstDSI CCRYGG 1 cut(s) 226
BstF5I GGATG 4 cut(s) 222, 369, 547, 733
BstKTI GATC 3 cut(s) 119, 465, 745
BstMAI GTCTC 1 cut(s) 476
BstMBI GATC 3 cut(s) 116, 462, 742
BstMWI GCNNNNNNNGC 2 cut(s) 248, 788
BstNI CCWGG 1 cut(s) 334
BstNSI RCATGY 1 cut(s) 302
BstSCI CCNGG 2 cut(s) 262, 332
BstSFI CTRYAG 2 cut(s) 130, 517
BstV1I GCAGC 2 cut(s) 541, 794
BstV2I GAAGAC 1 cut(s) 45
BsuRI GGCC 1 cut(s) 31
BtgI CCRYGG 1 cut(s) 226
BtgZI GCGATG 1 cut(s) 203
BtsCI GGATG 4 cut(s) 222, 369, 547, 733
BtsI GCAGTG 1 cut(s) 526
BtsIMutI CAGTG 3 cut(s) 22, 526, 681
Cac8I GCNNGC 2 cut(s) 33, 313
CciI TCATGA 1 cut(s) 643
Cfr10I RCCGGY 1 cut(s) 785
Cfr13I GGNCC 2 cut(s) 74, 330
CseI GACGC 1 cut(s) 276
Csp6I GTAC 1 cut(s) 12
CviAII CATG 5 cut(s) 227, 299, 353, 625, 644
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 3 cut(s) 50, 467, 684
DpnI GATC 3 cut(s) 118, 464, 744
DpnII GATC 3 cut(s) 116, 462, 742
DrdI GACNNNNNNGTC 1 cut(s) 281
DseDI GACNNNNNNGTC 1 cut(s) 281
Eam1104I CTCTTC 5 cut(s) 183, 192, 316, 439, 726
EarI CTCTTC 5 cut(s) 183, 192, 316, 439, 726
Eco130I CCWWGG 3 cut(s) 109, 226, 777
Eco47I GGWCC 2 cut(s) 74, 330
Eco57I CTGAAG 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 332
EcoT14I CCWWGG 3 cut(s) 109, 226, 777
ErhI CCWWGG 3 cut(s) 109, 226, 777
Esp3I CGTCTC 1 cut(s) 476
FaeI CATG 5 cut(s) 230, 302, 356, 628, 647
FatI CATG 5 cut(s) 226, 298, 352, 624, 643
FbaI TGATCA 1 cut(s) 742
FblI GTMKAC 1 cut(s) 475
Fnu4HI GCNGC 3 cut(s) 203, 555, 783
FokI GGATG 4 cut(s) 209, 376, 534, 740
Fsp4HI GCNGC 3 cut(s) 203, 555, 783
FspBI CTAG 3 cut(s) 209, 578, 828
GluI GCNGC 3 cut(s) 203, 555, 783
GsuI CTGGAG 1 cut(s) 46
HaeIII GGCC 1 cut(s) 31
HapII CCGG 2 cut(s) 264, 786
HgaI GACGC 1 cut(s) 276
Hin1II CATG 5 cut(s) 230, 302, 356, 628, 647
HincII GTYRAC 1 cut(s) 476
HindII GTYRAC 1 cut(s) 476
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 3 cut(s) 165, 647, 686
HpaII CCGG 2 cut(s) 264, 786
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 2 cut(s) 476, 679
Hpy188I TCNGA 1 cut(s) 761
Hpy188III TCNNGA 3 cut(s) 120, 286, 644
Hpy8I GTNNAC 2 cut(s) 476, 679
HpyCH4III ACNGT 2 cut(s) 11, 497
HpyCH4V TGCA 9 cut(s) 6, 98, 251, 281, 356, 457, 519, 557, 628
HpyF10VI GCNNNNNNNGC 2 cut(s) 248, 788
HpyF3I CTNAG 3 cut(s) 50, 467, 684
Hsp92II CATG 5 cut(s) 230, 302, 356, 628, 647
Ksp22I TGATCA 1 cut(s) 742
Kzo9I GATC 3 cut(s) 116, 462, 742
LguI GCTCTTC 1 cut(s) 192
LmnI GCTCC 4 cut(s) 111, 210, 586, 796
Lsp1109I GCAGC 2 cut(s) 541, 794
LweI GCATC 1 cut(s) 231
MaeI CTAG 3 cut(s) 209, 578, 828
MaeIII GTNAC 2 cut(s) 20, 823
MalI GATC 3 cut(s) 118, 464, 744
MbiI CCGCTC 1 cut(s) 202
MboI GATC 3 cut(s) 116, 462, 742
MfeI CAATTG 1 cut(s) 93
MhlI GDGCHC 1 cut(s) 793
MluCI AATT 5 cut(s) 93, 439, 511, 536, 588
MlyI GAGTC 2 cut(s) 656, 695
MseI TTAA 1 cut(s) 137
MslI CAYNNNNRTG 2 cut(s) 297, 351
MspA1I CMGCKG 2 cut(s) 35, 748
MspI CCGG 2 cut(s) 264, 786
MspR9I CCNGG 2 cut(s) 264, 334
MunI CAATTG 1 cut(s) 93
MvaI CCWGG 1 cut(s) 334
MwoI GCNNNNNNNGC 2 cut(s) 248, 788
NciI CCSGG 1 cut(s) 264
NcoI CCATGG 1 cut(s) 226
NdeII GATC 3 cut(s) 116, 462, 742
NlaIII CATG 5 cut(s) 230, 302, 356, 628, 647
NlaIV GGNNCC 1 cut(s) 206
NmuCI GTSAC 1 cut(s) 20
NspI RCATGY 1 cut(s) 302
PagI TCATGA 1 cut(s) 643
PciSI GCTCTTC 1 cut(s) 192
PfeI GAWTC 1 cut(s) 165
PfoI TCCNGGA 1 cut(s) 262
PkrI GCNGC 3 cut(s) 204, 556, 784
PleI GAGTC 2 cut(s) 655, 694
PpsI GAGTC 2 cut(s) 655, 694
PsiI TTATAA 1 cut(s) 444
Psp6I CCWGG 1 cut(s) 332
PspGI CCWGG 1 cut(s) 332
PspN4I GGNNCC 1 cut(s) 206
PspPI GGNCC 2 cut(s) 74, 330
PstI CTGCAG 1 cut(s) 521
PvuII CAGCTG 2 cut(s) 35, 748
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
RseI CAYNNNNRTG 2 cut(s) 297, 351
SalI GTCGAC 1 cut(s) 474
SapI GCTCTTC 1 cut(s) 192
SaqAI TTAA 1 cut(s) 137
SatI GCNGC 3 cut(s) 203, 555, 783
Sau3AI GATC 3 cut(s) 116, 462, 742
Sau96I GGNCC 2 cut(s) 74, 330
SchI GAGTC 2 cut(s) 656, 695
ScrFI CCNGG 2 cut(s) 264, 334
SduI GDGCHC 1 cut(s) 793
SfaNI GCATC 1 cut(s) 231
SfcI CTRYAG 2 cut(s) 130, 517
SinI GGWCC 2 cut(s) 74, 330
SmiMI CAYNNNNRTG 2 cut(s) 297, 351
Sse9I AATT 5 cut(s) 93, 439, 511, 536, 588
SsiI CCGC 1 cut(s) 202
SspMI CTAG 3 cut(s) 209, 578, 828
StyD4I CCNGG 2 cut(s) 262, 332
StyI CCWWGG 3 cut(s) 109, 226, 777
TaaI ACNGT 2 cut(s) 11, 497
TaqI TCGA 1 cut(s) 475
TasI AATT 5 cut(s) 93, 439, 511, 536, 588
TatI WGTACW 1 cut(s) 11
TauI GCSGC 1 cut(s) 205
TfiI GAWTC 1 cut(s) 165
Tru1I TTAA 1 cut(s) 137
Tru9I TTAA 1 cut(s) 137
TscAI CASTG 3 cut(s) 29, 526, 688
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 2 cut(s) 554, 782
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 7 cut(s) 341, 380, 432, 503, 530, 744, 787
TspRI CASTG 3 cut(s) 29, 526, 688
VpaK11BI GGWCC 2 cut(s) 74, 330
XapI RAATTY 1 cut(s) 536
XceI RCATGY 1 cut(s) 302
XmiI GTMKAC 1 cut(s) 475
XspI CTAG 3 cut(s) 209, 578, 828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.