MD06G1235300.v1.1
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0011275
Physical Location & Seq
Reverse (-)
36635179 .. 36636994
1816 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1235300.v1.1.491

Sequence Viewer

Length: 834 bp
ATGTGCACTAGAGGCCATTGGAGGCCAGCTGAAGACGAGAAGCTTAGGGAGTTGGTGGAACGATATGGACCTCATAACTGGAACGCAATAGCAGAAAAGCTCCAAGGAAGATCAGGAAAAAGCTGTAGGTTGAGATGGTTCAATCAGTTGGATTCAAGAATCAATAGGAACCCTTTTACAGAAGAGGAAGAAGAGCGTCTCCTAGCTTCTCACCGCATCCATGGAAATAGATGGGCTGTTATTGCAAGGCTTTTCCCTGGACGTACCGATAACGCAGTCAAGAACCATTGGCATGTCATCATGGCACGCAGGTGCAGAGAAAGATCTAGGCTTAATCACGCCAAATTAATAAGGAATACGTCTAGTGTTACTGCTGCTACTACGGCTCAAACCCCGTTCATGAGTATCAATACTAACAATAATGAACCAAAATCCTCTTCAAAACAAGACCATCCCCTGCAGATCAATTGCAATATCGGCACGTGGAACCTTGATTCATATAATTATATTGGGAAATATTACTCATGCAACGACAGAAATCATCATCAGTATCGGCCAGCTTTCACTCATGACCCTCATCCTCTCTTTCCAAAGGAGTTCTATCCCAATACCTGCAGTGTCACAATGCACCAAGATCATAATAAAGATCAGCCAATTGAGTTTTACGATTTTCTTCAAGTAAATACTGAGTCTAATGGGAGTGAAGTGATAGATAACGCAAGAAAGGATGAGGAGGAGGTGGATCAGGAAGGTACGGGACAACAGAACATAAGCAACGTAGCCGGTCTTCCTTTTATCGATTTCTTATCTGTTAATAATGGAACTTCTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009832 GO:0009834 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042546 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901347 GO:1901348 GO:1901363 GO:1901698 GO:1901700 GO:1902074 GO:1903338 GO:1903339 GO:1903340 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2000652 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

278

Amino Acids

32.18

Weight (kDa)

7.24

Isoelectric Point (pI)

62.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 4 - 50 3e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 7 - 67 2.2e-18 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 56 - 98 8e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 59 - 102 7.8e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011275)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17950 AT1G73410 AT1G73410
fragaria_vesca FvH4_5g17970
malus_domestica MD06G1235300.v1.1 MD14G1242300.v1.1
prunus_persica Prupe.5G240000_v2.0.a1
pyrus_communis pycom06g21020 pycom14g20370
rosa_chinensis RchiOBHm_Chr7g0177631
rosa_laevigata RLG00000005518
rosa_multiflora Rmu_ssc0000330.1_g000016
rosa_roxburghii Rroxscaffold_3G00275710
rosa_rugosa Rorug06G0408100 Rorug06G0408200
rosa_samantha Rh7AG007400 Rh7BG007400 Rh7CG007900 Rh7DG007600
rosa_wichuraiana Rw7G000630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 300
Acc36I ACCTGC 2 cut(s) 300, 620
AciI CCGC 1 cut(s) 214
AclWI GGATC 1 cut(s) 750
AcoI YGGCCR 1 cut(s) 554
AcuI CTGAAG 1 cut(s) 51
AcvI CACGTG 1 cut(s) 483
AfaI GTAC 2 cut(s) 265, 754
AgsI TTSAA 4 cut(s) 142, 156, 441, 677
AjnI CCWGG 1 cut(s) 256
AjuI GAANNNNNNNTTGG 2 cut(s) 421, 453
AleI CACNNNNGTG 1 cut(s) 310
AluBI AGCT 6 cut(s) 29, 43, 100, 123, 206, 560
AluI AGCT 6 cut(s) 29, 43, 100, 123, 206, 560
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 203
Alw44I GTGCAC 1 cut(s) 4
AlwI GGATC 1 cut(s) 750
AoxI GGCC 3 cut(s) 13, 23, 554
ApaLI GTGCAC 1 cut(s) 4
ApeKI GCWGC 1 cut(s) 374
AseI ATTAAT 1 cut(s) 347
Asp700I GAANNNNTTC 1 cut(s) 826
AspS9I GGNCC 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 203
AvaII GGWCC 1 cut(s) 68
BaeGI GKGCMC 1 cut(s) 8
BarI GAAGNNNNNNTAC 2 cut(s) 771, 803
BbrPI CACGTG 1 cut(s) 483
BbsI GAAGAC 2 cut(s) 39, 779
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 361
BccI CCATC 3 cut(s) 129, 225, 459
BceAI ACGGC 1 cut(s) 399
BciT130I CCWGG 1 cut(s) 258
BcoDI GTCTC 1 cut(s) 203
BfaI CTAG 4 cut(s) 9, 203, 327, 363
BfmI CTRYAG 3 cut(s) 124, 458, 613
BfuAI ACCTGC 2 cut(s) 300, 620
BglII AGATCT 1 cut(s) 323
BisI GCNGC 1 cut(s) 375
BlsI GCNGC 1 cut(s) 376
Bme1390I CCNGG 1 cut(s) 258
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 68
BmiI GGNNCC 2 cut(s) 170, 488
BmrFI CCNGG 1 cut(s) 258
BmsI GCATC 1 cut(s) 225
BpiI GAAGAC 2 cut(s) 39, 779
Bpu10I CCTNAGC 1 cut(s) 44
Bsa29I ATCGAT 1 cut(s) 798
BsaAI YACGTR 1 cut(s) 483
BsaJI CCNNGG 3 cut(s) 103, 220, 256
Bse118I RCCGGY 1 cut(s) 782
Bse1I ACTGG 1 cut(s) 83
BseBI CCWGG 1 cut(s) 258
BseCI ATCGAT 1 cut(s) 798
BseDI CCNNGG 3 cut(s) 103, 220, 256
BseGI GGATG 4 cut(s) 216, 451, 577, 733
BseMII CTCAG 1 cut(s) 678
BseNI ACTGG 1 cut(s) 83
BseRI GAGGAG 2 cut(s) 746, 749
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 1 cut(s) 361
BsgI GTGCAG 1 cut(s) 334
BshFI GGCC 3 cut(s) 15, 25, 556
BshVI ATCGAT 1 cut(s) 798
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 1 cut(s) 783
BslFI GGGAC 1 cut(s) 771
BsmAI GTCTC 1 cut(s) 203
BsmBI CGTCTC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 771
BsnI GGCC 3 cut(s) 15, 25, 556
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 6 cut(s) 110, 323, 462, 634, 646, 742
Bsp19I CCATGG 1 cut(s) 220
BspACI CCGC 1 cut(s) 214
BspANI GGCC 3 cut(s) 15, 25, 556
BspCNI CTCAG 1 cut(s) 679
BspDI ATCGAT 1 cut(s) 798
BspHI TCATGA 2 cut(s) 399, 568
BspLI GGNNCC 2 cut(s) 170, 488
BspMAI CTGCAG 2 cut(s) 462, 617
BspMI ACCTGC 2 cut(s) 300, 620
BspPI GGATC 1 cut(s) 750
BspQI GCTCTTC 1 cut(s) 186
BsrFI RCCGGY 1 cut(s) 782
BsrI ACTGG 1 cut(s) 83
BssAI RCCGGY 1 cut(s) 782
BssECI CCNNGG 3 cut(s) 103, 220, 256
BssMI GATC 6 cut(s) 110, 323, 462, 634, 646, 742
BssT1I CCWWGG 2 cut(s) 103, 220
Bst2UI CCWGG 1 cut(s) 258
Bst6I CTCTTC 3 cut(s) 177, 186, 442
BstBAI YACGTR 1 cut(s) 483
BstC8I GCNNGC 3 cut(s) 27, 307, 558
BstDEI CTNAG 2 cut(s) 44, 687
BstDSI CCRYGG 1 cut(s) 220
BstF5I GGATG 4 cut(s) 216, 451, 577, 733
BstKTI GATC 6 cut(s) 113, 326, 465, 637, 649, 745
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 6 cut(s) 110, 323, 462, 634, 646, 742
BstMWI GCNNNNNNNGC 4 cut(s) 12, 242, 383, 477
BstNI CCWGG 1 cut(s) 258
BstNSI RCATGY 1 cut(s) 296
BstSCI CCNGG 1 cut(s) 256
BstSFI CTRYAG 3 cut(s) 124, 458, 613
BstSLI GKGCMC 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 361
BstV2I GAAGAC 2 cut(s) 39, 779
BstX2I RGATCY 1 cut(s) 323
BstYI RGATCY 1 cut(s) 323
Bsu15I ATCGAT 1 cut(s) 798
BsuRI GGCC 3 cut(s) 15, 25, 556
BsuTUI ATCGAT 1 cut(s) 798
BtgI CCRYGG 1 cut(s) 220
BtsCI GGATG 4 cut(s) 216, 451, 577, 733
BtsI GCAGTG 1 cut(s) 622
BtsIMutI CAGTG 1 cut(s) 622
BveI ACCTGC 2 cut(s) 300, 620
Cac8I GCNNGC 3 cut(s) 27, 307, 558
CciI TCATGA 2 cut(s) 399, 568
Cfr10I RCCGGY 1 cut(s) 782
Cfr13I GGNCC 1 cut(s) 68
ClaI ATCGAT 1 cut(s) 798
CseI GACGC 1 cut(s) 185
Csp6I GTAC 2 cut(s) 264, 753
CviAII CATG 6 cut(s) 221, 293, 301, 400, 525, 569
CviQI GTAC 2 cut(s) 264, 753
DdeI CTNAG 2 cut(s) 44, 687
DpnI GATC 6 cut(s) 112, 325, 464, 636, 648, 744
DpnII GATC 6 cut(s) 110, 323, 462, 634, 646, 742
EaeI YGGCCR 1 cut(s) 554
Eam1104I CTCTTC 3 cut(s) 177, 186, 442
EarI CTCTTC 3 cut(s) 177, 186, 442
Eco130I CCWWGG 2 cut(s) 103, 220
Eco47I GGWCC 1 cut(s) 68
Eco57I CTGAAG 1 cut(s) 51
Eco72I CACGTG 1 cut(s) 483
EcoRII CCWGG 1 cut(s) 256
EcoT14I CCWWGG 2 cut(s) 103, 220
ErhI CCWWGG 2 cut(s) 103, 220
Esp3I CGTCTC 1 cut(s) 203
FaeI CATG 6 cut(s) 224, 296, 304, 403, 528, 572
FaqI GGGAC 1 cut(s) 771
FatI CATG 6 cut(s) 220, 292, 300, 399, 524, 568
Fnu4HI GCNGC 1 cut(s) 375
FokI GGATG 4 cut(s) 203, 438, 564, 740
Fsp4HI GCNGC 1 cut(s) 375
FspBI CTAG 4 cut(s) 9, 203, 327, 363
GluI GCNGC 1 cut(s) 375
HaeIII GGCC 3 cut(s) 15, 25, 556
HapII CCGG 1 cut(s) 783
HgaI GACGC 1 cut(s) 185
Hin1II CATG 6 cut(s) 224, 296, 304, 403, 528, 572
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 4 cut(s) 152, 159, 494, 689
HpaII CCGG 1 cut(s) 783
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 1 cut(s) 6
Hpy188III TCNNGA 6 cut(s) 114, 156, 280, 400, 569, 746
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 743
HpyCH4IV ACGT 4 cut(s) 262, 359, 482, 777
HpyCH4V TGCA 8 cut(s) 6, 245, 315, 460, 471, 528, 615, 628
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 242, 383, 477
HpyF3I CTNAG 2 cut(s) 44, 687
HpySE526I ACGT 4 cut(s) 262, 359, 482, 777
Hsp92II CATG 6 cut(s) 224, 296, 304, 403, 528, 572
Kzo9I GATC 6 cut(s) 110, 323, 462, 634, 646, 742
LguI GCTCTTC 1 cut(s) 186
LmnI GCTCC 1 cut(s) 105
Lsp1109I GCAGC 1 cut(s) 361
LweI GCATC 1 cut(s) 225
MaeI CTAG 4 cut(s) 9, 203, 327, 363
MaeII ACGT 4 cut(s) 262, 359, 482, 777
MaeIII GTNAC 2 cut(s) 367, 619
MalI GATC 6 cut(s) 112, 325, 464, 636, 648, 744
MboI GATC 6 cut(s) 110, 323, 462, 634, 646, 742
MboII GAAGA 9 cut(s) 44, 120, 194, 200, 203, 429, 665, 779, 819
MfeI CAATTG 2 cut(s) 466, 654
MflI RGATCY 1 cut(s) 323
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 4 cut(s) 344, 466, 502, 654
MlyI GAGTC 1 cut(s) 698
MmeI TCCRAC 1 cut(s) 129
MroXI GAANNNNTTC 1 cut(s) 826
MseI TTAA 3 cut(s) 333, 347, 813
MslI CAYNNNNRTG 2 cut(s) 291, 310
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 1 cut(s) 783
MspR9I CCNGG 1 cut(s) 258
MunI CAATTG 2 cut(s) 466, 654
MvaI CCWGG 1 cut(s) 258
MwoI GCNNNNNNNGC 4 cut(s) 12, 242, 383, 477
NcoI CCATGG 1 cut(s) 220
NdeII GATC 6 cut(s) 110, 323, 462, 634, 646, 742
NlaIII CATG 6 cut(s) 224, 296, 304, 403, 528, 572
NlaIV GGNNCC 2 cut(s) 170, 488
NmuCI GTSAC 1 cut(s) 619
NspI RCATGY 1 cut(s) 296
OliI CACNNNNGTG 1 cut(s) 310
PagI TCATGA 2 cut(s) 399, 568
PaqCI CACCTGC 1 cut(s) 300
PciSI GCTCTTC 1 cut(s) 186
PdmI GAANNNNTTC 1 cut(s) 826
PfeI GAWTC 3 cut(s) 152, 159, 494
PkrI GCNGC 1 cut(s) 376
PleI GAGTC 1 cut(s) 697
PmaCI CACGTG 1 cut(s) 483
PmlI CACGTG 1 cut(s) 483
PpsI GAGTC 1 cut(s) 697
Ppu21I YACGTR 1 cut(s) 483
PshBI ATTAAT 1 cut(s) 347
Psp6I CCWGG 1 cut(s) 256
PspCI CACGTG 1 cut(s) 483
PspGI CCWGG 1 cut(s) 256
PspN4I GGNNCC 2 cut(s) 170, 488
PspPI GGNCC 1 cut(s) 68
PstI CTGCAG 2 cut(s) 462, 617
PsuI RGATCY 1 cut(s) 323
PvuII CAGCTG 1 cut(s) 29
RsaI GTAC 2 cut(s) 265, 754
RsaNI GTAC 2 cut(s) 264, 753
RseI CAYNNNNRTG 2 cut(s) 291, 310
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 3 cut(s) 333, 347, 813
SatI GCNGC 1 cut(s) 375
Sau3AI GATC 6 cut(s) 110, 323, 462, 634, 646, 742
Sau96I GGNCC 1 cut(s) 68
SchI GAGTC 1 cut(s) 698
ScrFI CCNGG 1 cut(s) 258
SduI GDGCHC 1 cut(s) 8
SfaNI GCATC 1 cut(s) 225
SfcI CTRYAG 3 cut(s) 124, 458, 613
SinI GGWCC 1 cut(s) 68
SmiMI CAYNNNNRTG 2 cut(s) 291, 310
Sse9I AATT 4 cut(s) 344, 466, 502, 654
SsiI CCGC 1 cut(s) 214
SspI AATATT 1 cut(s) 518
SspMI CTAG 4 cut(s) 9, 203, 327, 363
StyD4I CCNGG 1 cut(s) 256
StyI CCWWGG 2 cut(s) 103, 220
TaiI ACGT 4 cut(s) 265, 362, 485, 780
TaqI TCGA 1 cut(s) 798
TasI AATT 4 cut(s) 344, 466, 502, 654
TfiI GAWTC 3 cut(s) 152, 159, 494
Tru1I TTAA 3 cut(s) 333, 347, 813
Tru9I TTAA 3 cut(s) 333, 347, 813
TscAI CASTG 1 cut(s) 622
TseFI GTSAC 1 cut(s) 619
TseI GCWGC 1 cut(s) 374
Tsp45I GTSAC 1 cut(s) 619
TspDTI ATGAA 4 cut(s) 388, 438, 486, 819
TspRI CASTG 1 cut(s) 622
VneI GTGCAC 1 cut(s) 4
VpaK11BI GGWCC 1 cut(s) 68
VspI ATTAAT 1 cut(s) 347
XceI RCATGY 1 cut(s) 296
XmnI GAANNNNTTC 1 cut(s) 826
XspI CTAG 4 cut(s) 9, 203, 327, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.