Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011275

Physical Location & Seq

Genomic Coordinates Forward (+)

27601593 .. 27603317

Gene Structure 1725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G73410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGATCATGTGCAGCCGAGGCCATTGGAGACCAGCTGAAGACGAGAAGCTCAAGGATCTTGTCGAACAATACGGTCCTCACAATTGGAACGCCATTGCTCTCAAGCTTCCTGGTCGCTCTGGTAAGAGTTGTAGATTGAGATGGTTTAATCAATTGGATCCAAGGATCAACCGAAACCCTTTCACGGAAGAAGAAGAAGAAAGACTTTTAGCGGCTCATCGGATCCATGGGAACAGATGGTCCATCATCGCAAGGCTTTTCCCTGGAAGAACTGATAACGCCGTCAAGAACCATTGGCACGTCATCATGGCTCGTCGCACACGCCAAACCTCTAAGCCTCGTCTTCTTCCCTCGACGACTTCGTCTTCTTCTTTAATGGCGAGTGAACAAATCATGATGAGTTCTGGTGGTTATAATCATAATTATAGTTCCGATGATCGGAAGAAAATATTTCCAGCAGACTTTATAAATTTCCCTTACAAATTCTCTCATATCAATCATCTTCACTTCCTAAAGGAGTTTTTCACCGGAAAGATCGCTTTAAATCACAAAGCAAATCAGAGTAAAAAGCCTATGGAGTTCTACAATTTTCTACAAGTAAACACAGATTCAAACAAGAGCGAGATTATAGATCAAGATTCAGGTCAAAGCAAACGCAGTGACTCGGACACCAAACATGAAAGTCATGTTCCATTCTTCGACTTTTTATCCGTTGGAAACTCTGCCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009832 GO:0009834 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901347 GO:1901348 GO:1901363 GO:1901700 GO:1902074 GO:1903338 GO:1903339 GO:1903340 GO:1903506 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

243

Amino Acids

28.2

Weight (kDa)

9.61

Isoelectric Point (pI)

58.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	6 - 52	9.1e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	9 - 69	6.5e-18	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	58 - 100	2e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	61 - 108	1.8e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17950 AT1G73410 AT1G73410
fragaria_vesca	FvH4_5g17970
malus_domestica	MD06G1235300.v1.1 MD14G1242300.v1.1
prunus_persica	Prupe.5G240000_v2.0.a1
pyrus_communis	pycom06g21020 pycom14g20370
rosa_chinensis	RchiOBHm_Chr7g0177631
rosa_laevigata	RLG00000005518
rosa_multiflora	Rmu_ssc0000330.1_g000016
rosa_roxburghii	Rroxscaffold_3G00275710
rosa_rugosa	Rorug06G0408100 Rorug06G0408200
rosa_samantha	Rh7AG007400 Rh7BG007400 Rh7CG007900 Rh7DG007600
rosa_wichuraiana	Rw7G000630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	414, 467
AasI	GACNNNNNNGTC	1 cut(s)	361
AciI	CCGC	1 cut(s)	212
AclWI	GGATC	6 cut(s)	63, 152, 165, 173, 217, 230
AcsI	RAATTY	2 cut(s)	469, 482
AcuI	CTGAAG	1 cut(s)	57
AfiI	CCNNNNNNNGG	2 cut(s)	184, 438
AgsI	TTSAA	1 cut(s)	612
AjiI	CACGTC	1 cut(s)	301
AjnI	CCWGG	2 cut(s)	109, 262
AloI	GAACNNNNNNTCC	2 cut(s)	224, 256
AluBI	AGCT	3 cut(s)	35, 49, 106
AluI	AGCT	3 cut(s)	35, 49, 106
Alw26I	GTCTC	1 cut(s)	22
AlwI	GGATC	6 cut(s)	63, 152, 165, 173, 217, 230
AoxI	GGCC	1 cut(s)	19
ApeKI	GCWGC	1 cut(s)	12
ApoI	RAATTY	2 cut(s)	469, 482
AspS9I	GGNCC	2 cut(s)	74, 240
AsuHPI	GGTGA	1 cut(s)	517
AvaII	GGWCC	2 cut(s)	74, 240
BamHI	GGATCC	2 cut(s)	157, 222
BbsI	GAAGAC	3 cut(s)	45, 335, 357
BbvI	GCAGC	1 cut(s)	24
BccI	CCATC	3 cut(s)	135, 231, 251
BceAI	ACGGC	1 cut(s)	266
BciT130I	CCWGG	2 cut(s)	111, 264
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	22
BfaI	CTAG	1 cut(s)	730
BisI	GCNGC	2 cut(s)	13, 213
BlsI	GCNGC	2 cut(s)	14, 214
Bme1390I	CCNGG	2 cut(s)	111, 264
Bme18I	GGWCC	2 cut(s)	74, 240
BmgBI	CACGTC	1 cut(s)	301
BmgT120I	GGNCC	2 cut(s)	74, 240
BmiI	GGNNCC	2 cut(s)	159, 224
BmrFI	CCNGG	2 cut(s)	111, 264
BpiI	GAAGAC	3 cut(s)	45, 335, 357
BpuEI	CTTGAG	2 cut(s)	35, 86
BsaI	GGTCTC	1 cut(s)	22
BsaJI	CCNNGG	4 cut(s)	16, 161, 226, 262
BsaWI	WCCGGW	1 cut(s)	527
BsaXI	ACNNNNNCTCC	1 cut(s)	710
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 438
Bse3DI	GCAATG	1 cut(s)	93
BseBI	CCWGG	2 cut(s)	111, 264
BseDI	CCNNGG	4 cut(s)	16, 161, 226, 262
BseLI	CCNNNNNNNGG	2 cut(s)	184, 438
BseMI	GCAATG	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	24
BsgI	GTGCAG	1 cut(s)	31
BshFI	GGCC	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	528
BslI	CCNNNNNNNGG	2 cut(s)	184, 438
BsmAI	GTCTC	1 cut(s)	22
BsnI	GGCC	1 cut(s)	21
Bso31I	GGTCTC	1 cut(s)	22
Bsp143I	GATC	8 cut(s)	3, 55, 157, 165, 222, 436, 534, 631
Bsp19I	CCATGG	1 cut(s)	226
BspACI	CCGC	1 cut(s)	212
BspANI	GGCC	1 cut(s)	21
BspHI	TCATGA	1 cut(s)	393
BspLI	GGNNCC	2 cut(s)	159, 224
BspPI	GGATC	6 cut(s)	63, 152, 165, 173, 217, 230
BspTNI	GGTCTC	1 cut(s)	22
BsrDI	GCAATG	1 cut(s)	93
BssECI	CCNNGG	4 cut(s)	16, 161, 226, 262
BssMI	GATC	8 cut(s)	3, 55, 157, 165, 222, 436, 534, 631
BssT1I	CCWWGG	2 cut(s)	161, 226
Bst2UI	CCWGG	2 cut(s)	111, 264
Bst4CI	ACNGT	1 cut(s)	74
BstDEI	CTNAG	1 cut(s)	333
BstDSI	CCRYGG	1 cut(s)	226
BstKTI	GATC	8 cut(s)	6, 58, 160, 168, 225, 439, 537, 634
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	8 cut(s)	3, 55, 157, 165, 222, 436, 534, 631
BstMWI	GCNNNNNNNGC	1 cut(s)	18
BstNI	CCWGG	2 cut(s)	111, 264
BstSCI	CCNGG	2 cut(s)	109, 262
BstV1I	GCAGC	1 cut(s)	24
BstV2I	GAAGAC	3 cut(s)	45, 335, 357
BstX2I	RGATCY	3 cut(s)	55, 157, 222
BstYI	RGATCY	3 cut(s)	55, 157, 222
BsuRI	GGCC	1 cut(s)	21
BtgI	CCRYGG	1 cut(s)	226
BtgZI	GCGATG	1 cut(s)	232
BtrI	CACGTC	1 cut(s)	301
BtsI	GCAGTG	1 cut(s)	664
BtsIMutI	CAGTG	1 cut(s)	664
CciI	TCATGA	1 cut(s)	393
Cfr13I	GGNCC	2 cut(s)	74, 240
CviAII	CATG	6 cut(s)	7, 227, 307, 394, 677, 686
DdeI	CTNAG	1 cut(s)	333
DpnI	GATC	8 cut(s)	5, 57, 159, 167, 224, 438, 536, 633
DpnII	GATC	8 cut(s)	3, 55, 157, 165, 222, 436, 534, 631
DraI	TTTAAA	1 cut(s)	543
DrdI	GACNNNNNNGTC	1 cut(s)	361
DseDI	GACNNNNNNGTC	1 cut(s)	361
Eco130I	CCWWGG	2 cut(s)	161, 226
Eco31I	GGTCTC	1 cut(s)	22
Eco47I	GGWCC	2 cut(s)	74, 240
Eco57I	CTGAAG	1 cut(s)	57
EcoRII	CCWGG	2 cut(s)	109, 262
EcoT14I	CCWWGG	2 cut(s)	161, 226
ErhI	CCWWGG	2 cut(s)	161, 226
FaeI	CATG	6 cut(s)	10, 230, 310, 397, 680, 689
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FatI	CATG	6 cut(s)	6, 226, 306, 393, 676, 685
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	13, 213
Fsp4HI	GCNGC	2 cut(s)	13, 213
FspBI	CTAG	1 cut(s)	730
GluI	GCNGC	2 cut(s)	13, 213
HaeIII	GGCC	1 cut(s)	21
HapII	CCGG	1 cut(s)	528
Hin1II	CATG	6 cut(s)	10, 230, 310, 397, 680, 689
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	3 cut(s)	608, 638, 662
HpaII	CCGG	1 cut(s)	528
HphI	GGTGA	1 cut(s)	517
Hpy166II	GTNNAC	2 cut(s)	386, 601
Hpy188I	TCNGA	5 cut(s)	222, 433, 441, 561, 667
Hpy188III	TCNNGA	3 cut(s)	286, 394, 635
Hpy8I	GTNNAC	2 cut(s)	386, 601
Hpy99I	CGWCG	2 cut(s)	318, 358
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	1 cut(s)	12
HpyF10VI	GCNNNNNNNGC	1 cut(s)	18
HpyF3I	CTNAG	1 cut(s)	333
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	6 cut(s)	10, 230, 310, 397, 680, 689
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	8 cut(s)	3, 55, 157, 165, 222, 436, 534, 631
Lsp1109I	GCAGC	1 cut(s)	24
MaeI	CTAG	1 cut(s)	730
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	1 cut(s)	659
MalI	GATC	8 cut(s)	5, 57, 159, 167, 224, 438, 536, 633
MboI	GATC	8 cut(s)	3, 55, 157, 165, 222, 436, 534, 631
MfeI	CAATTG	2 cut(s)	82, 152
MflI	RGATCY	3 cut(s)	55, 157, 222
MluCI	AATT	6 cut(s)	82, 152, 421, 469, 482, 586
MlyI	GAGTC	1 cut(s)	656
MmeI	TCCRAC	1 cut(s)	694
MnlI	CCTC	5 cut(s)	11, 87, 340, 348, 361
MseI	TTAA	3 cut(s)	147, 374, 542
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	1 cut(s)	528
MspR9I	CCNGG	2 cut(s)	111, 264
MunI	CAATTG	2 cut(s)	82, 152
MvaI	CCWGG	2 cut(s)	111, 264
MwoI	GCNNNNNNNGC	1 cut(s)	18
NcoI	CCATGG	1 cut(s)	226
NdeII	GATC	8 cut(s)	3, 55, 157, 165, 222, 436, 534, 631
NlaIII	CATG	6 cut(s)	10, 230, 310, 397, 680, 689
NlaIV	GGNNCC	2 cut(s)	159, 224
NmeAIII	GCCGAG	1 cut(s)	41
NmuCI	GTSAC	1 cut(s)	659
PagI	TCATGA	1 cut(s)	393
PcsI	WCGNNNNNNNCGW	1 cut(s)	359
PfeI	GAWTC	2 cut(s)	608, 638
PflFI	GACNNNGTC	1 cut(s)	361
PkrI	GCNGC	2 cut(s)	14, 214
PleI	GAGTC	1 cut(s)	656
PpsI	GAGTC	1 cut(s)	656
PsiI	TTATAA	2 cut(s)	414, 467
Psp6I	CCWGG	2 cut(s)	109, 262
PspGI	CCWGG	2 cut(s)	109, 262
PspN4I	GGNNCC	2 cut(s)	159, 224
PspPI	GGNCC	2 cut(s)	74, 240
PsuI	RGATCY	3 cut(s)	55, 157, 222
PsyI	GACNNNGTC	1 cut(s)	361
PvuII	CAGCTG	1 cut(s)	35
SaqAI	TTAA	3 cut(s)	147, 374, 542
SatI	GCNGC	2 cut(s)	13, 213
Sau3AI	GATC	8 cut(s)	3, 55, 157, 165, 222, 436, 534, 631
Sau96I	GGNCC	2 cut(s)	74, 240
SchI	GAGTC	1 cut(s)	656
ScrFI	CCNGG	2 cut(s)	111, 264
SetI	ASST	6 cut(s)	37, 51, 108, 303, 332, 646
SinI	GGWCC	2 cut(s)	74, 240
SmlI	CTYRAG	2 cut(s)	50, 101
SmoI	CTYRAG	2 cut(s)	50, 101
Sse9I	AATT	6 cut(s)	82, 152, 421, 469, 482, 586
SsiI	CCGC	1 cut(s)	212
SspI	AATATT	1 cut(s)	450
SspMI	CTAG	1 cut(s)	730
StyD4I	CCNGG	2 cut(s)	109, 262
StyI	CCWWGG	2 cut(s)	161, 226
TaaI	ACNGT	1 cut(s)	74
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	3 cut(s)	63, 353, 699
TasI	AATT	6 cut(s)	82, 152, 421, 469, 482, 586
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	2 cut(s)	608, 638
Tru1I	TTAA	3 cut(s)	147, 374, 542
Tru9I	TTAA	3 cut(s)	147, 374, 542
TscAI	CASTG	1 cut(s)	664
TseFI	GTSAC	1 cut(s)	659
TseI	GCWGC	1 cut(s)	12
Tsp45I	GTSAC	1 cut(s)	659
TspDTI	ATGAA	1 cut(s)	693
TspGWI	ACGGA	2 cut(s)	200, 700
TspRI	CASTG	1 cut(s)	664
Tth111I	GACNNNGTC	1 cut(s)	361
VpaK11BI	GGWCC	2 cut(s)	74, 240
XapI	RAATTY	2 cut(s)	469, 482
XspI	CTAG	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.