Rw7G000630
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0011275
Physical Location & Seq
Forward (+)
509942 .. 512466
2525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G000630.1

Sequence Viewer

Length: 843 bp
ATGTGCAGCAGTACAAGAGGGCACTGGAGGCCAGCTGAAGATGAGAAGCTTAGGGAGTTGGTGGAACGATATGGACCTCATAACTGGAACGCAATTGCAGAAAAGCTCCAAGGAAGATCAGGAAAGAGCTGTAGGTTAAGATGGTTCAATCAGTTGGACCCGAGAATCAACAGAAACCCTTTTAGTGAAGAGGAAGAAGAGCGTCTTCTAGCTTCTCATCGCATCCATGGAAATAGATGGGCTGTTATTGCAAGGCTTTTTCCCGGACGCACCGACAATGCAGTCAAGAACCATTGGCATGTCATTATGGCTCGCAGATGCAGAGAGAGGTCTAGGCTTCACCATCATCTTCACGCAAAAGGGATGACTAGGACTTCTACTAACAATAGTACTCCTCACCATCAAGTATTAATGAGTTCCATTAATCATGATGAATTATCAAAATCCTCTTCAAATTATAAACAAGACTTGCAGATGATCCTCAATTGTCGACAGGAGACGATGAATGACAATTCTTACATTGGGAATTACTGCAGTGCTACTGAAAGAAATTTTCACTATTATCCTGCTGCTTTTACTCACAATACTACTCTAGCTCCTTTAATTCCAAACAAAGATCAGTTTTATCCCAATACCATGCACCAAGATAAAAATCGTGAGCCAATTGAGTTTTATGATTTTCTCCAAGTAAACACAGAGTCTAATAGAAGTGAAGTGATAGACATTAATTCAAGAAAGGATGAAGAGGAGGTTGATCAGCTGGAAGCTATCAGACATGAACAGACCAAGGCAGCTGGTGCTCCTTTTATAGATTTCTTCTCTGGTGGAAGTGTTACTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009832 GO:0009834 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042546 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901347 GO:1901348 GO:1901363 GO:1901698 GO:1901700 GO:1902074 GO:1903338 GO:1903339 GO:1903340 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2000652 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

280

Amino Acids

32.76

Weight (kDa)

7.79

Isoelectric Point (pI)

61.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 6 - 52 3.1e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 9 - 69 6.9e-19 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 58 - 100 1.9e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 61 - 104 2.1e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011275)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17950 AT1G73410 AT1G73410
fragaria_vesca FvH4_5g17970
malus_domestica MD06G1235300.v1.1 MD14G1242300.v1.1
prunus_persica Prupe.5G240000_v2.0.a1
pyrus_communis pycom06g21020 pycom14g20370
rosa_chinensis RchiOBHm_Chr7g0177631
rosa_laevigata RLG00000005518
rosa_multiflora Rmu_ssc0000330.1_g000016
rosa_roxburghii Rroxscaffold_3G00275710
rosa_rugosa Rorug06G0408100 Rorug06G0408200
rosa_samantha Rh7AG007400 Rh7BG007400 Rh7CG007900 Rh7DG007600
rosa_wichuraiana Rw7G000630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 459
AasI GACNNNNNNGTC 1 cut(s) 281
AccI GTMKAC 1 cut(s) 490
AclWI GGATC 1 cut(s) 472
AcsI RAATTY 1 cut(s) 550
AcuI CTGAAG 1 cut(s) 57
AfaI GTAC 2 cut(s) 13, 391
AgsI TTSAA 3 cut(s) 148, 453, 732
Alw21I GWGCWC 1 cut(s) 802
Alw26I GTCTC 1 cut(s) 491
AlwI GGATC 1 cut(s) 472
Ama87I CYCGRG 1 cut(s) 160
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 3 cut(s) 6, 569, 791
ApoI RAATTY 1 cut(s) 550
AseI ATTAAT 3 cut(s) 410, 423, 726
AspS9I GGNCC 2 cut(s) 74, 157
AsuC2I CCSGG 1 cut(s) 264
AsuHPI GGTGA 2 cut(s) 332, 389
AvaI CYCGRG 1 cut(s) 160
AvaII GGWCC 2 cut(s) 74, 157
BaeGI GKGCMC 1 cut(s) 24
BbsI GAAGAC 1 cut(s) 197
Bbv12I GWGCWC 1 cut(s) 802
BbvI GCAGC 3 cut(s) 18, 556, 803
BccI CCATC 4 cut(s) 135, 231, 351, 408
BclI TGATCA 1 cut(s) 754
BcnI CCSGG 1 cut(s) 264
BcoDI GTCTC 1 cut(s) 491
BfaI CTAG 5 cut(s) 209, 333, 369, 593, 837
BfmI CTRYAG 2 cut(s) 130, 532
BisI GCNGC 3 cut(s) 7, 570, 792
BlsI GCNGC 3 cut(s) 8, 571, 793
BmcAI AGTACT 1 cut(s) 391
Bme1390I CCNGG 1 cut(s) 264
Bme18I GGWCC 2 cut(s) 74, 157
BmeT110I CYCGRG 1 cut(s) 160
BmgT120I GGNCC 2 cut(s) 74, 157
BmiI GGNNCC 1 cut(s) 159
BmrFI CCNGG 1 cut(s) 264
BmsI GCATC 2 cut(s) 231, 308
BpiI GAAGAC 1 cut(s) 197
BpmI CTGGAG 1 cut(s) 46
Bpu10I CCTNAGC 1 cut(s) 50
BpuMI CCSGG 1 cut(s) 264
BsaBI GATNNNNATC 1 cut(s) 651
BsaJI CCNNGG 3 cut(s) 109, 226, 786
BsaXI ACNNNNNCTCC 2 cut(s) 580, 610
Bse1I ACTGG 2 cut(s) 29, 89
Bse8I GATNNNNATC 1 cut(s) 651
BseDI CCNNGG 3 cut(s) 109, 226, 786
BseGI GGATG 3 cut(s) 222, 369, 745
BseJI GATNNNNATC 1 cut(s) 651
BseNI ACTGG 2 cut(s) 29, 89
BseRI GAGGAG 2 cut(s) 384, 761
BseSI GKGCMC 1 cut(s) 24
BseXI GCAGC 3 cut(s) 18, 556, 803
BsgI GTGCAG 1 cut(s) 25
BshFI GGCC 1 cut(s) 31
BsiHKAI GWGCWC 1 cut(s) 802
BsiHKCI CYCGRG 1 cut(s) 160
BsiSI CCGG 1 cut(s) 264
BsmAI GTCTC 1 cut(s) 491
BsmBI CGTCTC 1 cut(s) 491
BsnI GGCC 1 cut(s) 31
BsoBI CYCGRG 1 cut(s) 160
Bsp1286I GDGCHC 2 cut(s) 24, 802
Bsp143I GATC 4 cut(s) 116, 477, 616, 754
Bsp19I CCATGG 1 cut(s) 226
BspANI GGCC 1 cut(s) 31
BspHI TCATGA 1 cut(s) 427
BspLI GGNNCC 1 cut(s) 159
BspMAI CTGCAG 1 cut(s) 536
BspPI GGATC 1 cut(s) 472
BspQI GCTCTTC 1 cut(s) 192
BsrI ACTGG 2 cut(s) 29, 89
BssECI CCNNGG 3 cut(s) 109, 226, 786
BssMI GATC 4 cut(s) 116, 477, 616, 754
BssT1I CCWWGG 3 cut(s) 109, 226, 786
Bst6I CTCTTC 4 cut(s) 183, 192, 454, 738
BstAPI GCANNNNNTGC 1 cut(s) 797
BstC8I GCNNGC 2 cut(s) 33, 313
BstDEI CTNAG 1 cut(s) 50
BstDSI CCRYGG 1 cut(s) 226
BstF5I GGATG 3 cut(s) 222, 369, 745
BstKTI GATC 4 cut(s) 119, 480, 619, 757
BstMAI GTCTC 1 cut(s) 491
BstMBI GATC 4 cut(s) 116, 477, 616, 754
BstMWI GCNNNNNNNGC 3 cut(s) 28, 248, 797
BstNSI RCATGY 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 262
BstSFI CTRYAG 2 cut(s) 130, 532
BstSLI GKGCMC 1 cut(s) 24
BstV1I GCAGC 3 cut(s) 18, 556, 803
BstV2I GAAGAC 1 cut(s) 197
BsuRI GGCC 1 cut(s) 31
BtgI CCRYGG 1 cut(s) 226
BtgZI GCGATG 1 cut(s) 203
BtsCI GGATG 3 cut(s) 222, 369, 745
BtsI GCAGTG 1 cut(s) 541
BtsIMutI CAGTG 2 cut(s) 22, 541
Cac8I GCNNGC 2 cut(s) 33, 313
CciI TCATGA 1 cut(s) 427
Cfr13I GGNCC 2 cut(s) 74, 157
CseI GACGC 2 cut(s) 191, 276
Csp6I GTAC 2 cut(s) 12, 390
CviAII CATG 5 cut(s) 227, 299, 428, 637, 776
CviQI GTAC 2 cut(s) 12, 390
DdeI CTNAG 1 cut(s) 50
DpnI GATC 4 cut(s) 118, 479, 618, 756
DpnII GATC 4 cut(s) 116, 477, 616, 754
DrdI GACNNNNNNGTC 1 cut(s) 281
DseDI GACNNNNNNGTC 1 cut(s) 281
Eam1104I CTCTTC 4 cut(s) 183, 192, 454, 738
EarI CTCTTC 4 cut(s) 183, 192, 454, 738
Eco130I CCWWGG 3 cut(s) 109, 226, 786
Eco47I GGWCC 2 cut(s) 74, 157
Eco57I CTGAAG 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 160
EcoT14I CCWWGG 3 cut(s) 109, 226, 786
ErhI CCWWGG 3 cut(s) 109, 226, 786
Esp3I CGTCTC 1 cut(s) 491
FaeI CATG 5 cut(s) 230, 302, 431, 640, 779
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FatI CATG 5 cut(s) 226, 298, 427, 636, 775
FbaI TGATCA 1 cut(s) 754
FblI GTMKAC 1 cut(s) 490
Fnu4HI GCNGC 3 cut(s) 7, 570, 792
FokI GGATG 3 cut(s) 209, 376, 752
Fsp4HI GCNGC 3 cut(s) 7, 570, 792
FspBI CTAG 5 cut(s) 209, 333, 369, 593, 837
GluI GCNGC 3 cut(s) 7, 570, 792
GsuI CTGGAG 1 cut(s) 46
HaeIII GGCC 1 cut(s) 31
HapII CCGG 1 cut(s) 264
HgaI GACGC 2 cut(s) 191, 276
Hin1II CATG 5 cut(s) 230, 302, 431, 640, 779
HincII GTYRAC 1 cut(s) 491
HindII GTYRAC 1 cut(s) 491
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 2 cut(s) 165, 698
HpaII CCGG 1 cut(s) 264
HphI GGTGA 2 cut(s) 332, 389
Hpy166II GTNNAC 2 cut(s) 491, 691
Hpy188I TCNGA 1 cut(s) 773
Hpy188III TCNNGA 5 cut(s) 120, 286, 428, 656, 732
Hpy8I GTNNAC 2 cut(s) 491, 691
HpyCH4V TGCA 8 cut(s) 6, 98, 251, 281, 321, 472, 534, 640
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 248, 797
HpyF3I CTNAG 1 cut(s) 50
Hsp92II CATG 5 cut(s) 230, 302, 431, 640, 779
Ksp22I TGATCA 1 cut(s) 754
Kzo9I GATC 4 cut(s) 116, 477, 616, 754
LguI GCTCTTC 1 cut(s) 192
LmnI GCTCC 3 cut(s) 111, 601, 805
Lsp1109I GCAGC 3 cut(s) 18, 556, 803
LweI GCATC 2 cut(s) 231, 308
MaeI CTAG 5 cut(s) 209, 333, 369, 593, 837
MaeIII GTNAC 1 cut(s) 832
MalI GATC 4 cut(s) 118, 479, 618, 756
MboI GATC 4 cut(s) 116, 477, 616, 754
MfeI CAATTG 3 cut(s) 93, 484, 663
MhlI GDGCHC 2 cut(s) 24, 802
MlyI GAGTC 1 cut(s) 707
MmeI TCCRAC 1 cut(s) 135
MseI TTAA 5 cut(s) 137, 410, 423, 602, 726
MslI CAYNNNNRTG 1 cut(s) 297
MspA1I CMGCKG 3 cut(s) 35, 760, 794
MspI CCGG 1 cut(s) 264
MspR9I CCNGG 1 cut(s) 264
MunI CAATTG 3 cut(s) 93, 484, 663
MwoI GCNNNNNNNGC 3 cut(s) 28, 248, 797
NciI CCSGG 1 cut(s) 264
NcoI CCATGG 1 cut(s) 226
NdeII GATC 4 cut(s) 116, 477, 616, 754
NlaIII CATG 5 cut(s) 230, 302, 431, 640, 779
NlaIV GGNNCC 1 cut(s) 159
NspI RCATGY 1 cut(s) 302
PagI TCATGA 1 cut(s) 427
PciSI GCTCTTC 1 cut(s) 192
PfeI GAWTC 1 cut(s) 165
PfoI TCCNGGA 1 cut(s) 262
PkrI GCNGC 3 cut(s) 8, 571, 793
PleI GAGTC 1 cut(s) 706
PpsI GAGTC 1 cut(s) 706
PshBI ATTAAT 3 cut(s) 410, 423, 726
PsiI TTATAA 1 cut(s) 459
PspN4I GGNNCC 1 cut(s) 159
PspPI GGNCC 2 cut(s) 74, 157
PstI CTGCAG 1 cut(s) 536
PvuII CAGCTG 3 cut(s) 35, 760, 794
RsaI GTAC 2 cut(s) 13, 391
RsaNI GTAC 2 cut(s) 12, 390
RseI CAYNNNNRTG 1 cut(s) 297
SalI GTCGAC 1 cut(s) 489
SapI GCTCTTC 1 cut(s) 192
SaqAI TTAA 5 cut(s) 137, 410, 423, 602, 726
SatI GCNGC 3 cut(s) 7, 570, 792
Sau3AI GATC 4 cut(s) 116, 477, 616, 754
Sau96I GGNCC 2 cut(s) 74, 157
ScaI AGTACT 1 cut(s) 391
SchI GAGTC 1 cut(s) 707
ScrFI CCNGG 1 cut(s) 264
SduI GDGCHC 2 cut(s) 24, 802
SfaNI GCATC 2 cut(s) 231, 308
SfcI CTRYAG 2 cut(s) 130, 532
SinI GGWCC 2 cut(s) 74, 157
SmiMI CAYNNNNRTG 1 cut(s) 297
SspMI CTAG 5 cut(s) 209, 333, 369, 593, 837
StyD4I CCNGG 1 cut(s) 262
StyI CCWWGG 3 cut(s) 109, 226, 786
TaqI TCGA 1 cut(s) 490
TatI WGTACW 2 cut(s) 11, 389
TfiI GAWTC 1 cut(s) 165
Tru1I TTAA 5 cut(s) 137, 410, 423, 602, 726
Tru9I TTAA 5 cut(s) 137, 410, 423, 602, 726
TscAI CASTG 2 cut(s) 29, 541
TseI GCWGC 3 cut(s) 6, 569, 791
TspDTI ATGAA 4 cut(s) 447, 518, 756, 792
TspRI CASTG 2 cut(s) 29, 541
VpaK11BI GGWCC 2 cut(s) 74, 157
VspI ATTAAT 3 cut(s) 410, 423, 726
XapI RAATTY 1 cut(s) 550
XceI RCATGY 1 cut(s) 302
XmiI GTMKAC 1 cut(s) 490
XspI CTAG 5 cut(s) 209, 333, 369, 593, 837
ZrmI AGTACT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.