Rroxscaffold_3G00275710
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0011275
Physical Location & Seq
Reverse (-)
67060660 .. 67063032
2373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00275710.1

Sequence Viewer

Length: 840 bp
ATGTGCAGCAGTACAAGAGGGCACTGGAGGCCAGCTGAAGACGAGAAGCTTAGGGAGTTGGTGGAACGATATGGACCTCATAACTGGAACGCAATTGCAGAAAAGCTCCAAGGAAGATCAGGAAAGAGCTGTAGGTTAAGATGGTTCAATCAGTTGGACCCGAGAATCAACAGAAACCCTTTTAGCGAAGAGGAAGAAGAGCGTCTTCTAGCTTCTCATCGCATCCATGGAAATAGATGGGCTGTTATTGCAAGGCTTTTTCCTGGACGCACCGACAATGCAGTTAAGAACCATTGGCATGTCATTATGGCTCGCAGATGCAGAGAGAGGTCTAGGCTTCACCATCATCTTCACGCAAAAGGGATGACTAGGAATTCTACTAACAATACTCCTCATCATCAAGTATTAATGAGTTCCATTAATCATGATGAATTATCAAAATCCTCTTCAAATTATAAACAAGACTTGCAGATGATCCTCAATTGTCGACAGGAGACGATGAATGACAATTCTTACATTGGGAATTACTGCAGTGCTACTGAAAGAAATTTTCACTATTATCCTGCTGCTTTTACTCATAATACTACTCTAGCTCCTTTAATTCCAAACAAAGATCAGTTTTATCCCAATACCATGCACCAAGATAAAAATCGTGAGCCAATTGAGTTTTATGATTTTCTCCAAGTAAACACAGAGTCTAATAGAAGTGAAGTGATAGACATTAATTCAAGAAAGGATGAAGAGGAGGTTGATCAGCTGGAAGCTATCAGACATGAACAGACCAAGGCAGAGGGCGCTCCTTTTATAGATTTCTTCTCTGGTGGAAGTGTTACTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009832 GO:0009834 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042546 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901347 GO:1901348 GO:1901363 GO:1901698 GO:1901700 GO:1902074 GO:1903338 GO:1903339 GO:1903340 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2000652 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

279

Amino Acids

32.74

Weight (kDa)

7.31

Isoelectric Point (pI)

61.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 6 - 52 3.1e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 9 - 69 6.8e-19 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 58 - 100 1.9e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 61 - 104 2.1e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011275)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17950 AT1G73410 AT1G73410
fragaria_vesca FvH4_5g17970
malus_domestica MD06G1235300.v1.1 MD14G1242300.v1.1
prunus_persica Prupe.5G240000_v2.0.a1
pyrus_communis pycom06g21020 pycom14g20370
rosa_chinensis RchiOBHm_Chr7g0177631
rosa_laevigata RLG00000005518
rosa_multiflora Rmu_ssc0000330.1_g000016
rosa_roxburghii Rroxscaffold_3G00275710
rosa_rugosa Rorug06G0408100 Rorug06G0408200
rosa_samantha Rh7AG007400 Rh7BG007400 Rh7CG007900 Rh7DG007600
rosa_wichuraiana Rw7G000630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 456
AccI GTMKAC 1 cut(s) 487
AclWI GGATC 1 cut(s) 469
AcsI RAATTY 2 cut(s) 373, 547
AcuI CTGAAG 1 cut(s) 57
AfaI GTAC 1 cut(s) 13
AgsI TTSAA 3 cut(s) 148, 450, 729
AjnI CCWGG 1 cut(s) 262
AluBI AGCT 9 cut(s) 35, 49, 106, 129, 212, 593, 757, 764, 837
AluI AGCT 9 cut(s) 35, 49, 106, 129, 212, 593, 757, 764, 837
Alw26I GTCTC 1 cut(s) 488
AlwI GGATC 1 cut(s) 469
Ama87I CYCGRG 1 cut(s) 160
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 2 cut(s) 6, 566
ApoI RAATTY 2 cut(s) 373, 547
AseI ATTAAT 3 cut(s) 407, 420, 723
AspLEI GCGC 1 cut(s) 797
AspS9I GGNCC 2 cut(s) 74, 157
AsuHPI GGTGA 1 cut(s) 332
AvaI CYCGRG 1 cut(s) 160
AvaII GGWCC 2 cut(s) 74, 157
BaeGI GKGCMC 1 cut(s) 24
BbsI GAAGAC 2 cut(s) 45, 197
BbvI GCAGC 2 cut(s) 18, 553
BccI CCATC 3 cut(s) 135, 231, 351
BciT130I CCWGG 1 cut(s) 264
BclI TGATCA 1 cut(s) 751
BcoDI GTCTC 1 cut(s) 488
BfaI CTAG 5 cut(s) 209, 333, 369, 590, 834
BfmI CTRYAG 2 cut(s) 130, 529
BfoI RGCGCY 1 cut(s) 798
BisI GCNGC 2 cut(s) 7, 567
BlsI GCNGC 2 cut(s) 8, 568
Bme1390I CCNGG 1 cut(s) 264
Bme18I GGWCC 2 cut(s) 74, 157
BmeT110I CYCGRG 1 cut(s) 160
BmgT120I GGNCC 2 cut(s) 74, 157
BmiI GGNNCC 1 cut(s) 159
BmrFI CCNGG 1 cut(s) 264
BmsI GCATC 2 cut(s) 231, 308
BpiI GAAGAC 2 cut(s) 45, 197
BpmI CTGGAG 1 cut(s) 46
Bpu10I CCTNAGC 1 cut(s) 50
BsaBI GATNNNNATC 1 cut(s) 648
BsaJI CCNNGG 3 cut(s) 109, 226, 783
BsaXI ACNNNNNCTCC 2 cut(s) 577, 607
Bse1I ACTGG 2 cut(s) 29, 89
Bse8I GATNNNNATC 1 cut(s) 648
BseBI CCWGG 1 cut(s) 264
BseDI CCNNGG 3 cut(s) 109, 226, 783
BseGI GGATG 3 cut(s) 222, 369, 742
BseJI GATNNNNATC 1 cut(s) 648
BseNI ACTGG 2 cut(s) 29, 89
BseRI GAGGAG 2 cut(s) 381, 758
BseSI GKGCMC 1 cut(s) 24
BseXI GCAGC 2 cut(s) 18, 553
BsgI GTGCAG 1 cut(s) 25
BshFI GGCC 1 cut(s) 31
BsiHKCI CYCGRG 1 cut(s) 160
BsmAI GTCTC 1 cut(s) 488
BsmBI CGTCTC 1 cut(s) 488
BsnI GGCC 1 cut(s) 31
BsoBI CYCGRG 1 cut(s) 160
Bsp1286I GDGCHC 1 cut(s) 24
Bsp143I GATC 4 cut(s) 116, 474, 613, 751
Bsp19I CCATGG 1 cut(s) 226
BspANI GGCC 1 cut(s) 31
BspHI TCATGA 1 cut(s) 424
BspLI GGNNCC 1 cut(s) 159
BspMAI CTGCAG 1 cut(s) 533
BspPI GGATC 1 cut(s) 469
BspQI GCTCTTC 1 cut(s) 192
BsrI ACTGG 2 cut(s) 29, 89
BssECI CCNNGG 3 cut(s) 109, 226, 783
BssMI GATC 4 cut(s) 116, 474, 613, 751
BssT1I CCWWGG 3 cut(s) 109, 226, 783
Bst2UI CCWGG 1 cut(s) 264
Bst6I CTCTTC 4 cut(s) 183, 192, 451, 735
BstC8I GCNNGC 2 cut(s) 33, 313
BstDEI CTNAG 1 cut(s) 50
BstDSI CCRYGG 1 cut(s) 226
BstF5I GGATG 3 cut(s) 222, 369, 742
BstH2I RGCGCY 1 cut(s) 798
BstHHI GCGC 1 cut(s) 797
BstKTI GATC 4 cut(s) 119, 477, 616, 754
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 4 cut(s) 116, 474, 613, 751
BstMWI GCNNNNNNNGC 3 cut(s) 28, 248, 794
BstNI CCWGG 1 cut(s) 264
BstNSI RCATGY 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 262
BstSFI CTRYAG 2 cut(s) 130, 529
BstSLI GKGCMC 1 cut(s) 24
BstV1I GCAGC 2 cut(s) 18, 553
BstV2I GAAGAC 2 cut(s) 45, 197
BsuRI GGCC 1 cut(s) 31
BtgI CCRYGG 1 cut(s) 226
BtgZI GCGATG 1 cut(s) 203
BtsCI GGATG 3 cut(s) 222, 369, 742
BtsI GCAGTG 1 cut(s) 538
BtsIMutI CAGTG 2 cut(s) 22, 538
Cac8I GCNNGC 2 cut(s) 33, 313
CciI TCATGA 1 cut(s) 424
CfoI GCGC 1 cut(s) 797
Cfr13I GGNCC 2 cut(s) 74, 157
CseI GACGC 2 cut(s) 191, 276
Csp6I GTAC 1 cut(s) 12
CviAII CATG 5 cut(s) 227, 299, 425, 634, 773
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 1 cut(s) 50
DpnI GATC 4 cut(s) 118, 476, 615, 753
DpnII GATC 4 cut(s) 116, 474, 613, 751
Eam1104I CTCTTC 4 cut(s) 183, 192, 451, 735
EarI CTCTTC 4 cut(s) 183, 192, 451, 735
Eco130I CCWWGG 3 cut(s) 109, 226, 783
Eco47I GGWCC 2 cut(s) 74, 157
Eco57I CTGAAG 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 160
EcoRI GAATTC 1 cut(s) 373
EcoRII CCWGG 1 cut(s) 262
EcoT14I CCWWGG 3 cut(s) 109, 226, 783
ErhI CCWWGG 3 cut(s) 109, 226, 783
Esp3I CGTCTC 1 cut(s) 488
FaeI CATG 5 cut(s) 230, 302, 428, 637, 776
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FatI CATG 5 cut(s) 226, 298, 424, 633, 772
FbaI TGATCA 1 cut(s) 751
FblI GTMKAC 1 cut(s) 487
Fnu4HI GCNGC 2 cut(s) 7, 567
FokI GGATG 3 cut(s) 209, 376, 749
Fsp4HI GCNGC 2 cut(s) 7, 567
FspBI CTAG 5 cut(s) 209, 333, 369, 590, 834
GlaI GCGC 1 cut(s) 796
GluI GCNGC 2 cut(s) 7, 567
GsuI CTGGAG 1 cut(s) 46
HaeII RGCGCY 1 cut(s) 798
HaeIII GGCC 1 cut(s) 31
HgaI GACGC 2 cut(s) 191, 276
HhaI GCGC 1 cut(s) 797
Hin1II CATG 5 cut(s) 230, 302, 428, 637, 776
Hin6I GCGC 1 cut(s) 795
HinP1I GCGC 1 cut(s) 795
HincII GTYRAC 1 cut(s) 488
HindII GTYRAC 1 cut(s) 488
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 2 cut(s) 165, 695
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 2 cut(s) 488, 688
Hpy188I TCNGA 1 cut(s) 770
Hpy188III TCNNGA 4 cut(s) 120, 425, 653, 729
Hpy8I GTNNAC 2 cut(s) 488, 688
HpyCH4V TGCA 8 cut(s) 6, 98, 251, 281, 321, 469, 531, 637
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 248, 794
HpyF3I CTNAG 1 cut(s) 50
Hsp92II CATG 5 cut(s) 230, 302, 428, 637, 776
HspAI GCGC 1 cut(s) 795
Ksp22I TGATCA 1 cut(s) 751
Kzo9I GATC 4 cut(s) 116, 474, 613, 751
LguI GCTCTTC 1 cut(s) 192
LmnI GCTCC 3 cut(s) 111, 598, 802
Lsp1109I GCAGC 2 cut(s) 18, 553
LweI GCATC 2 cut(s) 231, 308
MaeI CTAG 5 cut(s) 209, 333, 369, 590, 834
MaeIII GTNAC 1 cut(s) 829
MalI GATC 4 cut(s) 118, 476, 615, 753
MboI GATC 4 cut(s) 116, 474, 613, 751
MfeI CAATTG 3 cut(s) 93, 481, 660
MhlI GDGCHC 1 cut(s) 24
MlyI GAGTC 1 cut(s) 704
MmeI TCCRAC 1 cut(s) 135
MseI TTAA 6 cut(s) 137, 285, 407, 420, 599, 723
MslI CAYNNNNRTG 1 cut(s) 297
MspA1I CMGCKG 2 cut(s) 35, 757
MspR9I CCNGG 1 cut(s) 264
MunI CAATTG 3 cut(s) 93, 481, 660
MvaI CCWGG 1 cut(s) 264
MwoI GCNNNNNNNGC 3 cut(s) 28, 248, 794
NcoI CCATGG 1 cut(s) 226
NdeII GATC 4 cut(s) 116, 474, 613, 751
NlaIII CATG 5 cut(s) 230, 302, 428, 637, 776
NlaIV GGNNCC 1 cut(s) 159
NspI RCATGY 1 cut(s) 302
PagI TCATGA 1 cut(s) 424
PciSI GCTCTTC 1 cut(s) 192
PfeI GAWTC 1 cut(s) 165
PfoI TCCNGGA 1 cut(s) 262
PkrI GCNGC 2 cut(s) 8, 568
PleI GAGTC 1 cut(s) 703
PpsI GAGTC 1 cut(s) 703
PshBI ATTAAT 3 cut(s) 407, 420, 723
PsiI TTATAA 1 cut(s) 456
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 159
PspPI GGNCC 2 cut(s) 74, 157
PstI CTGCAG 1 cut(s) 533
PvuII CAGCTG 2 cut(s) 35, 757
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
RseI CAYNNNNRTG 1 cut(s) 297
SalI GTCGAC 1 cut(s) 486
SapI GCTCTTC 1 cut(s) 192
SaqAI TTAA 6 cut(s) 137, 285, 407, 420, 599, 723
SatI GCNGC 2 cut(s) 7, 567
Sau3AI GATC 4 cut(s) 116, 474, 613, 751
Sau96I GGNCC 2 cut(s) 74, 157
SchI GAGTC 1 cut(s) 704
ScrFI CCNGG 1 cut(s) 264
SduI GDGCHC 1 cut(s) 24
SfaNI GCATC 2 cut(s) 231, 308
SfcI CTRYAG 2 cut(s) 130, 529
SinI GGWCC 2 cut(s) 74, 157
SmiMI CAYNNNNRTG 1 cut(s) 297
SspMI CTAG 5 cut(s) 209, 333, 369, 590, 834
StyD4I CCNGG 1 cut(s) 262
StyI CCWWGG 3 cut(s) 109, 226, 783
TaqI TCGA 1 cut(s) 487
TatI WGTACW 1 cut(s) 11
TfiI GAWTC 1 cut(s) 165
Tru1I TTAA 6 cut(s) 137, 285, 407, 420, 599, 723
Tru9I TTAA 6 cut(s) 137, 285, 407, 420, 599, 723
TscAI CASTG 2 cut(s) 29, 538
TseI GCWGC 2 cut(s) 6, 566
TspDTI ATGAA 4 cut(s) 444, 515, 753, 789
TspRI CASTG 2 cut(s) 29, 538
VpaK11BI GGWCC 2 cut(s) 74, 157
VspI ATTAAT 3 cut(s) 407, 420, 723
XapI RAATTY 2 cut(s) 373, 547
XceI RCATGY 1 cut(s) 302
XmiI GTMKAC 1 cut(s) 487
XspI CTAG 5 cut(s) 209, 333, 369, 590, 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.