Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0011275

Physical Location & Seq

Genomic Coordinates Reverse (-)

21422170 .. 21423484

Gene Structure 1315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g20370.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGTGCACTAGAGGCCATTGGAGGCCAGCTGAAGACGAGAAGCTTAGGGAGTTGGTGGAACGATATGGACCTCATAACTGGAACGCAATAGCAGAAAAGCTCCAAGGAAGATCAGGGAAAAGCTGTAGGTTGAGATGGTTCAATCAGTTGGACCCAAGAATCAATAGGAACCCCTTCACAGAAGAGGAAGAAGAGCGTCTCTTAGTTTCTCACCGCATTCATGGAAATAGATGGGCTGTTATTGCAAGGCTTTTCCCTGGACGTACCGATAACGCAGTCAAGAACCATTGGCATGTCATCATGGCACGCAGATGCAGAGAAAGATCTAGGCTTAATCACTCCAAATTAATAAGGAATACTTCTACTGCTCAAACCTCGTTCATGAGTATCATTACTAACAACAATGAACCAAAATCCTCTTCAAAACAAGAACATCCCCTGCAGATCAATTGCGATATCGGCACATGGAACCTGGATTCATATAATTATATTGGGAAATACTACTCATGCAGCGACAGAAATTATCATCAATATCGGCCAGCTTTCACTCATAGCCCTCCTCCTCCATTTCCAAAAGAGTTCTATCGCAATACCTGCAGTGCCACAATGCACCAAGATCATAATAAAGATCAGCCAATTGAGTTTTACGATTTTCTCCAAGTAAATACTGAGTCTAATGGAAGTGAAGTGATAGATAATGCAAGAAAGGAGGAGGAGGAGGTGGATCAGGAAGGTACGGGACAACAGAAAAGCAACGTGGCCGGTCTTCCTTTTATCGATTTCTTAGCTGTTAATAATGGGATTTCTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009832 GO:0009834 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042546 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901347 GO:1901348 GO:1901363 GO:1901698 GO:1901700 GO:1902074 GO:1903338 GO:1903339 GO:1903340 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2000652 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

271

Amino Acids

31.56

Weight (kDa)

8.19

Isoelectric Point (pI)

64.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17950 AT1G73410 AT1G73410
fragaria_vesca	FvH4_5g17970
malus_domestica	MD06G1235300.v1.1 MD14G1242300.v1.1
prunus_persica	Prupe.5G240000_v2.0.a1
pyrus_communis	pycom06g21020 pycom14g20370
rosa_chinensis	RchiOBHm_Chr7g0177631
rosa_laevigata	RLG00000005518
rosa_multiflora	Rmu_ssc0000330.1_g000016
rosa_roxburghii	Rroxscaffold_3G00275710
rosa_rugosa	Rorug06G0408100 Rorug06G0408200
rosa_samantha	Rh7AG007400 Rh7BG007400 Rh7CG007900 Rh7DG007600
rosa_wichuraiana	Rw7G000630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	602
AciI	CCGC	1 cut(s)	214
AclWI	GGATC	1 cut(s)	732
AcoI	YGGCCR	2 cut(s)	536, 759
AcuI	CTGAAG	1 cut(s)	51
AfaI	GTAC	2 cut(s)	265, 736
AgsI	TTSAA	2 cut(s)	142, 423
AjnI	CCWGG	2 cut(s)	256, 471
AjuI	GAANNNNNNNTTGG	2 cut(s)	403, 435
AluBI	AGCT	6 cut(s)	29, 43, 100, 123, 542, 788
AluI	AGCT	6 cut(s)	29, 43, 100, 123, 542, 788
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	203
Alw44I	GTGCAC	1 cut(s)	4
AlwI	GGATC	1 cut(s)	732
AoxI	GGCC	4 cut(s)	13, 23, 536, 759
ApaLI	GTGCAC	1 cut(s)	4
ApeKI	GCWGC	1 cut(s)	510
AseI	ATTAAT	1 cut(s)	347
Asp700I	GAANNNNTTC	1 cut(s)	173
AspS9I	GGNCC	2 cut(s)	68, 151
AsuHPI	GGTGA	1 cut(s)	203
AvaII	GGWCC	2 cut(s)	68, 151
BaeGI	GKGCMC	1 cut(s)	8
BbsI	GAAGAC	2 cut(s)	39, 758
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	522
BccI	CCATC	2 cut(s)	129, 225
BciT130I	CCWGG	2 cut(s)	258, 473
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	2 cut(s)	9, 327
BfmI	CTRYAG	3 cut(s)	124, 440, 595
BfuAI	ACCTGC	1 cut(s)	602
BglII	AGATCT	1 cut(s)	323
BisI	GCNGC	1 cut(s)	511
BlsI	GCNGC	1 cut(s)	512
Bme1390I	CCNGG	2 cut(s)	258, 473
Bme18I	GGWCC	2 cut(s)	68, 151
BmgT120I	GGNCC	2 cut(s)	68, 151
BmiI	GGNNCC	3 cut(s)	153, 170, 470
BmrFI	CCNGG	2 cut(s)	258, 473
BmsI	GCATC	1 cut(s)	302
BpiI	GAAGAC	2 cut(s)	39, 758
Bpu10I	CCTNAGC	1 cut(s)	44
Bsa29I	ATCGAT	1 cut(s)	777
BsaJI	CCNNGG	2 cut(s)	103, 256
Bse118I	RCCGGY	1 cut(s)	761
Bse1I	ACTGG	1 cut(s)	83
BseBI	CCWGG	2 cut(s)	258, 473
BseCI	ATCGAT	1 cut(s)	777
BseDI	CCNNGG	2 cut(s)	103, 256
BseGI	GGATG	1 cut(s)	433
BseMII	CTCAG	1 cut(s)	660
BseNI	ACTGG	1 cut(s)	83
BseRI	GAGGAG	5 cut(s)	549, 552, 725, 728, 731
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	522
BshFI	GGCC	4 cut(s)	15, 25, 538, 761
BshVI	ATCGAT	1 cut(s)	777
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	762
BslFI	GGGAC	1 cut(s)	753
BsmAI	GTCTC	1 cut(s)	203
BsmBI	CGTCTC	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	753
BsmI	GAATGC	1 cut(s)	216
BsnI	GGCC	4 cut(s)	15, 25, 538, 761
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	6 cut(s)	110, 323, 444, 616, 628, 724
BspACI	CCGC	1 cut(s)	214
BspANI	GGCC	4 cut(s)	15, 25, 538, 761
BspCNI	CTCAG	1 cut(s)	661
BspDI	ATCGAT	1 cut(s)	777
BspHI	TCATGA	1 cut(s)	381
BspLI	GGNNCC	3 cut(s)	153, 170, 470
BspMAI	CTGCAG	2 cut(s)	444, 599
BspMI	ACCTGC	1 cut(s)	602
BspPI	GGATC	1 cut(s)	732
BspQI	GCTCTTC	1 cut(s)	186
BsrFI	RCCGGY	1 cut(s)	761
BsrI	ACTGG	1 cut(s)	83
BssAI	RCCGGY	1 cut(s)	761
BssECI	CCNNGG	2 cut(s)	103, 256
BssMI	GATC	6 cut(s)	110, 323, 444, 616, 628, 724
BssT1I	CCWWGG	1 cut(s)	103
Bst2UI	CCWGG	2 cut(s)	258, 473
Bst6I	CTCTTC	3 cut(s)	177, 186, 424
BstAPI	GCANNNNNTGC	1 cut(s)	594
BstC8I	GCNNGC	3 cut(s)	27, 307, 540
BstDEI	CTNAG	4 cut(s)	44, 202, 669, 784
BstF5I	GGATG	1 cut(s)	433
BstKTI	GATC	6 cut(s)	113, 326, 447, 619, 631, 727
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	6 cut(s)	110, 323, 444, 616, 628, 724
BstMWI	GCNNNNNNNGC	4 cut(s)	12, 242, 459, 594
BstNI	CCWGG	2 cut(s)	258, 473
BstNSI	RCATGY	1 cut(s)	296
BstSCI	CCNGG	2 cut(s)	256, 471
BstSFI	CTRYAG	3 cut(s)	124, 440, 595
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	522
BstV2I	GAAGAC	2 cut(s)	39, 758
BstX2I	RGATCY	1 cut(s)	323
BstYI	RGATCY	1 cut(s)	323
Bsu15I	ATCGAT	1 cut(s)	777
BsuRI	GGCC	4 cut(s)	15, 25, 538, 761
BsuTUI	ATCGAT	1 cut(s)	777
BtsCI	GGATG	1 cut(s)	433
BtsI	GCAGTG	1 cut(s)	604
BtsIMutI	CAGTG	1 cut(s)	604
BveI	ACCTGC	1 cut(s)	602
Cac8I	GCNNGC	3 cut(s)	27, 307, 540
CciI	TCATGA	1 cut(s)	381
Cfr10I	RCCGGY	1 cut(s)	761
Cfr13I	GGNCC	2 cut(s)	68, 151
ClaI	ATCGAT	1 cut(s)	777
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	2 cut(s)	264, 735
CviAII	CATG	6 cut(s)	221, 293, 301, 382, 465, 507
CviQI	GTAC	2 cut(s)	264, 735
DdeI	CTNAG	4 cut(s)	44, 202, 669, 784
DpnI	GATC	6 cut(s)	112, 325, 446, 618, 630, 726
DpnII	GATC	6 cut(s)	110, 323, 444, 616, 628, 724
EaeI	YGGCCR	2 cut(s)	536, 759
Eam1104I	CTCTTC	3 cut(s)	177, 186, 424
EarI	CTCTTC	3 cut(s)	177, 186, 424
Eco130I	CCWWGG	1 cut(s)	103
Eco32I	GATATC	1 cut(s)	457
Eco47I	GGWCC	2 cut(s)	68, 151
Eco57I	CTGAAG	1 cut(s)	51
EcoRII	CCWGG	2 cut(s)	256, 471
EcoRV	GATATC	1 cut(s)	457
EcoT14I	CCWWGG	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	103
Esp3I	CGTCTC	1 cut(s)	203
FaeI	CATG	6 cut(s)	224, 296, 304, 385, 468, 510
FalI	AAGNNNNNCTT	2 cut(s)	343, 375
FaqI	GGGAC	1 cut(s)	753
FatI	CATG	6 cut(s)	220, 292, 300, 381, 464, 506
Fnu4HI	GCNGC	1 cut(s)	511
FokI	GGATG	1 cut(s)	420
Fsp4HI	GCNGC	1 cut(s)	511
FspBI	CTAG	2 cut(s)	9, 327
GluI	GCNGC	1 cut(s)	511
HaeIII	GGCC	4 cut(s)	15, 25, 538, 761
HapII	CCGG	1 cut(s)	762
HgaI	GACGC	1 cut(s)	185
Hin1II	CATG	6 cut(s)	224, 296, 304, 385, 468, 510
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	3 cut(s)	159, 476, 671
HpaII	CCGG	1 cut(s)	762
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188III	TCNNGA	3 cut(s)	280, 382, 728
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	2 cut(s)	184, 725
HpyCH4IV	ACGT	2 cut(s)	262, 756
HpyCH4V	TGCA	8 cut(s)	6, 245, 315, 442, 510, 597, 610, 701
HpyF10VI	GCNNNNNNNGC	4 cut(s)	12, 242, 459, 594
HpyF3I	CTNAG	4 cut(s)	44, 202, 669, 784
HpySE526I	ACGT	2 cut(s)	262, 756
Hsp92II	CATG	6 cut(s)	224, 296, 304, 385, 468, 510
Kzo9I	GATC	6 cut(s)	110, 323, 444, 616, 628, 724
LguI	GCTCTTC	1 cut(s)	186
LmnI	GCTCC	1 cut(s)	105
Lsp1109I	GCAGC	1 cut(s)	522
LweI	GCATC	1 cut(s)	302
MaeI	CTAG	2 cut(s)	9, 327
MaeII	ACGT	2 cut(s)	262, 756
MalI	GATC	6 cut(s)	112, 325, 446, 618, 630, 726
MboI	GATC	6 cut(s)	110, 323, 444, 616, 628, 724
MboII	GAAGA	8 cut(s)	44, 120, 194, 200, 203, 411, 758, 798
MfeI	CAATTG	2 cut(s)	448, 636
MflI	RGATCY	1 cut(s)	323
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	5 cut(s)	344, 448, 484, 520, 636
MlyI	GAGTC	1 cut(s)	680
MmeI	TCCRAC	1 cut(s)	129
MroXI	GAANNNNTTC	1 cut(s)	173
MseI	TTAA	3 cut(s)	333, 347, 792
MslI	CAYNNNNRTG	2 cut(s)	291, 310
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	1 cut(s)	762
MspR9I	CCNGG	2 cut(s)	258, 473
MunI	CAATTG	2 cut(s)	448, 636
Mva1269I	GAATGC	1 cut(s)	216
MvaI	CCWGG	2 cut(s)	258, 473
MwoI	GCNNNNNNNGC	4 cut(s)	12, 242, 459, 594
NdeII	GATC	6 cut(s)	110, 323, 444, 616, 628, 724
NlaIII	CATG	6 cut(s)	224, 296, 304, 385, 468, 510
NlaIV	GGNNCC	3 cut(s)	153, 170, 470
NspI	RCATGY	1 cut(s)	296
PagI	TCATGA	1 cut(s)	381
PciSI	GCTCTTC	1 cut(s)	186
PctI	GAATGC	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	173
PfeI	GAWTC	2 cut(s)	159, 476
PkrI	GCNGC	1 cut(s)	512
PleI	GAGTC	1 cut(s)	679
PpsI	GAGTC	1 cut(s)	679
PshBI	ATTAAT	1 cut(s)	347
Psp6I	CCWGG	2 cut(s)	256, 471
PspGI	CCWGG	2 cut(s)	256, 471
PspN4I	GGNNCC	3 cut(s)	153, 170, 470
PspPI	GGNCC	2 cut(s)	68, 151
PstI	CTGCAG	2 cut(s)	444, 599
PsuI	RGATCY	1 cut(s)	323
PvuII	CAGCTG	1 cut(s)	29
RsaI	GTAC	2 cut(s)	265, 736
RsaNI	GTAC	2 cut(s)	264, 735
RseI	CAYNNNNRTG	2 cut(s)	291, 310
SapI	GCTCTTC	1 cut(s)	186
SaqAI	TTAA	3 cut(s)	333, 347, 792
SatI	GCNGC	1 cut(s)	511
Sau3AI	GATC	6 cut(s)	110, 323, 444, 616, 628, 724
Sau96I	GGNCC	2 cut(s)	68, 151
SchI	GAGTC	1 cut(s)	680
ScrFI	CCNGG	2 cut(s)	258, 473
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	302
SfcI	CTRYAG	3 cut(s)	124, 440, 595
SinI	GGWCC	2 cut(s)	68, 151
SmiMI	CAYNNNNRTG	2 cut(s)	291, 310
Sse9I	AATT	5 cut(s)	344, 448, 484, 520, 636
SsiI	CCGC	1 cut(s)	214
SspMI	CTAG	2 cut(s)	9, 327
StyD4I	CCNGG	2 cut(s)	256, 471
StyI	CCWWGG	1 cut(s)	103
TaiI	ACGT	2 cut(s)	265, 759
TaqI	TCGA	1 cut(s)	777
TasI	AATT	5 cut(s)	344, 448, 484, 520, 636
TfiI	GAWTC	2 cut(s)	159, 476
Tru1I	TTAA	3 cut(s)	333, 347, 792
Tru9I	TTAA	3 cut(s)	333, 347, 792
TscAI	CASTG	1 cut(s)	604
TseI	GCWGC	1 cut(s)	510
TspDTI	ATGAA	5 cut(s)	209, 370, 420, 468, 798
TspRI	CASTG	1 cut(s)	604
VneI	GTGCAC	1 cut(s)	4
VpaK11BI	GGWCC	2 cut(s)	68, 151
VspI	ATTAAT	1 cut(s)	347
XceI	RCATGY	1 cut(s)	296
XmnI	GAANNNNTTC	1 cut(s)	173
XspI	CTAG	2 cut(s)	9, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.