Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000330.1

Orthogroup ID

OG0011275

Physical Location & Seq

Genomic Coordinates Forward (+)

75193 .. 76743

Gene Structure 1551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000330.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

atgtgcagcagtacaagagggcactggaggccagctgaagacgagaagcttagggagttggtggaacgatatggacctcataactggaacgcaattgcagaaaagctccaaggaagatcaggaaagagctgtaggttaagatggttcaatcagttggacccgagaatcaacagaaacccttttagtgaagaggaagaagagcgtcttctagcttctcatcgcatccatggaaatagatgggctgttattgcaaggctttttcccggacgcaccgacaatgcagtcaagaaccattggcatgtcattatggctcgcagatgcagagagaggtctaggcttcaccatcaacttcacgcaaaagggatgactaggacttctactaacaatagtactcctcaccatcaagtattaatgagttccattaatcatgatgaattatcaaaatcctcttcaaattataaacaagacttgcagatgatcctcaattgtcgacaggagacgatgaatgacaattcttacattgggaattactgcagtgctactgaaagaaattttcactattatcctgctgcttttactcacaatactactctagctcctttaattccaaacaaagatcagttttatcccaataccatgcaccaagataaaaatcgtgagccaattgagttttatgattttctccaagtaaacacagagtctaatagaagtgaagtgatagacattaattcaagaaaggatgaagaggaggttgatcagctggaagctatcagacatgaacagaccaaggcagctggtgctccttttatagatttcttctctggtggaagtgttactagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009832 GO:0009834 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042546 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901347 GO:1901348 GO:1901363 GO:1901698 GO:1901700 GO:1902074 GO:1903338 GO:1903339 GO:1903340 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2000652 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

280

Amino Acids

32.75

Weight (kDa)

7.78

Isoelectric Point (pI)

61.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17950 AT1G73410 AT1G73410
fragaria_vesca	FvH4_5g17970
malus_domestica	MD06G1235300.v1.1 MD14G1242300.v1.1
prunus_persica	Prupe.5G240000_v2.0.a1
pyrus_communis	pycom06g21020 pycom14g20370
rosa_chinensis	RchiOBHm_Chr7g0177631
rosa_laevigata	RLG00000005518
rosa_multiflora	Rmu_ssc0000330.1_g000016
rosa_roxburghii	Rroxscaffold_3G00275710
rosa_rugosa	Rorug06G0408100 Rorug06G0408200
rosa_samantha	Rh7AG007400 Rh7BG007400 Rh7CG007900 Rh7DG007600
rosa_wichuraiana	Rw7G000630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	459
AasI	GACNNNNNNGTC	1 cut(s)	281
AccI	GTMKAC	1 cut(s)	490
AclWI	GGATC	1 cut(s)	472
AcsI	RAATTY	1 cut(s)	550
AcuI	CTGAAG	1 cut(s)	57
AfaI	GTAC	2 cut(s)	13, 391
AgsI	TTSAA	3 cut(s)	148, 453, 732
Alw21I	GWGCWC	1 cut(s)	802
Alw26I	GTCTC	1 cut(s)	491
AlwI	GGATC	1 cut(s)	472
Ama87I	CYCGRG	1 cut(s)	160
AoxI	GGCC	1 cut(s)	29
ApeKI	GCWGC	3 cut(s)	6, 569, 791
ApoI	RAATTY	1 cut(s)	550
AseI	ATTAAT	3 cut(s)	410, 423, 726
AspS9I	GGNCC	2 cut(s)	74, 157
AsuC2I	CCSGG	1 cut(s)	264
AsuHPI	GGTGA	2 cut(s)	332, 389
AvaI	CYCGRG	1 cut(s)	160
AvaII	GGWCC	2 cut(s)	74, 157
BaeGI	GKGCMC	1 cut(s)	24
BbsI	GAAGAC	2 cut(s)	45, 197
Bbv12I	GWGCWC	1 cut(s)	802
BbvI	GCAGC	3 cut(s)	18, 556, 803
BccI	CCATC	4 cut(s)	135, 231, 351, 408
BclI	TGATCA	1 cut(s)	754
BcnI	CCSGG	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	491
BfaI	CTAG	5 cut(s)	209, 333, 369, 593, 837
BfmI	CTRYAG	2 cut(s)	130, 532
BisI	GCNGC	3 cut(s)	7, 570, 792
BlsI	GCNGC	3 cut(s)	8, 571, 793
BmcAI	AGTACT	1 cut(s)	391
Bme1390I	CCNGG	1 cut(s)	264
Bme18I	GGWCC	2 cut(s)	74, 157
BmeT110I	CYCGRG	1 cut(s)	160
BmgT120I	GGNCC	2 cut(s)	74, 157
BmiI	GGNNCC	1 cut(s)	159
BmrFI	CCNGG	1 cut(s)	264
BmsI	GCATC	2 cut(s)	231, 308
BpiI	GAAGAC	2 cut(s)	45, 197
BpmI	CTGGAG	1 cut(s)	46
Bpu10I	CCTNAGC	1 cut(s)	50
BpuMI	CCSGG	1 cut(s)	264
BsaBI	GATNNNNATC	1 cut(s)	651
BsaJI	CCNNGG	3 cut(s)	109, 226, 786
BsaXI	ACNNNNNCTCC	2 cut(s)	580, 610
Bse1I	ACTGG	2 cut(s)	29, 89
Bse8I	GATNNNNATC	1 cut(s)	651
BseDI	CCNNGG	3 cut(s)	109, 226, 786
BseGI	GGATG	3 cut(s)	222, 369, 745
BseJI	GATNNNNATC	1 cut(s)	651
BseNI	ACTGG	2 cut(s)	29, 89
BseRI	GAGGAG	2 cut(s)	384, 761
BseSI	GKGCMC	1 cut(s)	24
BseXI	GCAGC	3 cut(s)	18, 556, 803
BsgI	GTGCAG	1 cut(s)	25
BshFI	GGCC	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	802
BsiHKCI	CYCGRG	1 cut(s)	160
BsiSI	CCGG	1 cut(s)	264
BsmAI	GTCTC	1 cut(s)	491
BsmBI	CGTCTC	1 cut(s)	491
BsnI	GGCC	1 cut(s)	31
BsoBI	CYCGRG	1 cut(s)	160
Bsp1286I	GDGCHC	2 cut(s)	24, 802
Bsp143I	GATC	4 cut(s)	116, 477, 616, 754
Bsp19I	CCATGG	1 cut(s)	226
BspANI	GGCC	1 cut(s)	31
BspHI	TCATGA	1 cut(s)	427
BspLI	GGNNCC	1 cut(s)	159
BspMAI	CTGCAG	1 cut(s)	536
BspPI	GGATC	1 cut(s)	472
BspQI	GCTCTTC	1 cut(s)	192
BsrI	ACTGG	2 cut(s)	29, 89
BssECI	CCNNGG	3 cut(s)	109, 226, 786
BssMI	GATC	4 cut(s)	116, 477, 616, 754
BssT1I	CCWWGG	3 cut(s)	109, 226, 786
Bst6I	CTCTTC	4 cut(s)	183, 192, 454, 738
BstAPI	GCANNNNNTGC	1 cut(s)	797
BstC8I	GCNNGC	2 cut(s)	33, 313
BstDEI	CTNAG	1 cut(s)	50
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	3 cut(s)	222, 369, 745
BstKTI	GATC	4 cut(s)	119, 480, 619, 757
BstMAI	GTCTC	1 cut(s)	491
BstMBI	GATC	4 cut(s)	116, 477, 616, 754
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 248, 797
BstNSI	RCATGY	1 cut(s)	302
BstSCI	CCNGG	1 cut(s)	262
BstSFI	CTRYAG	2 cut(s)	130, 532
BstSLI	GKGCMC	1 cut(s)	24
BstV1I	GCAGC	3 cut(s)	18, 556, 803
BstV2I	GAAGAC	2 cut(s)	45, 197
BsuRI	GGCC	1 cut(s)	31
BtgI	CCRYGG	1 cut(s)	226
BtgZI	GCGATG	1 cut(s)	203
BtsCI	GGATG	3 cut(s)	222, 369, 745
BtsI	GCAGTG	1 cut(s)	541
BtsIMutI	CAGTG	2 cut(s)	22, 541
Cac8I	GCNNGC	2 cut(s)	33, 313
CciI	TCATGA	1 cut(s)	427
Cfr13I	GGNCC	2 cut(s)	74, 157
CseI	GACGC	2 cut(s)	191, 276
Csp6I	GTAC	2 cut(s)	12, 390
CviAII	CATG	5 cut(s)	227, 299, 428, 637, 776
CviQI	GTAC	2 cut(s)	12, 390
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	4 cut(s)	118, 479, 618, 756
DpnII	GATC	4 cut(s)	116, 477, 616, 754
DrdI	GACNNNNNNGTC	1 cut(s)	281
DseDI	GACNNNNNNGTC	1 cut(s)	281
Eam1104I	CTCTTC	4 cut(s)	183, 192, 454, 738
EarI	CTCTTC	4 cut(s)	183, 192, 454, 738
Eco130I	CCWWGG	3 cut(s)	109, 226, 786
Eco47I	GGWCC	2 cut(s)	74, 157
Eco57I	CTGAAG	1 cut(s)	57
Eco88I	CYCGRG	1 cut(s)	160
EcoT14I	CCWWGG	3 cut(s)	109, 226, 786
ErhI	CCWWGG	3 cut(s)	109, 226, 786
Esp3I	CGTCTC	1 cut(s)	491
FaeI	CATG	5 cut(s)	230, 302, 431, 640, 779
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FatI	CATG	5 cut(s)	226, 298, 427, 636, 775
FbaI	TGATCA	1 cut(s)	754
FblI	GTMKAC	1 cut(s)	490
Fnu4HI	GCNGC	3 cut(s)	7, 570, 792
FokI	GGATG	3 cut(s)	209, 376, 752
Fsp4HI	GCNGC	3 cut(s)	7, 570, 792
FspBI	CTAG	5 cut(s)	209, 333, 369, 593, 837
GluI	GCNGC	3 cut(s)	7, 570, 792
GsuI	CTGGAG	1 cut(s)	46
HaeIII	GGCC	1 cut(s)	31
HapII	CCGG	1 cut(s)	264
HgaI	GACGC	2 cut(s)	191, 276
Hin1II	CATG	5 cut(s)	230, 302, 431, 640, 779
HincII	GTYRAC	1 cut(s)	491
HindII	GTYRAC	1 cut(s)	491
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	2 cut(s)	165, 698
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	2 cut(s)	332, 389
Hpy166II	GTNNAC	2 cut(s)	491, 691
Hpy188I	TCNGA	1 cut(s)	773
Hpy188III	TCNNGA	5 cut(s)	120, 286, 428, 656, 732
Hpy8I	GTNNAC	2 cut(s)	491, 691
HpyCH4V	TGCA	8 cut(s)	6, 98, 251, 281, 321, 472, 534, 640
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 248, 797
HpyF3I	CTNAG	1 cut(s)	50
Hsp92II	CATG	5 cut(s)	230, 302, 431, 640, 779
Ksp22I	TGATCA	1 cut(s)	754
Kzo9I	GATC	4 cut(s)	116, 477, 616, 754
LguI	GCTCTTC	1 cut(s)	192
LmnI	GCTCC	3 cut(s)	111, 601, 805
Lsp1109I	GCAGC	3 cut(s)	18, 556, 803
LweI	GCATC	2 cut(s)	231, 308
MaeI	CTAG	5 cut(s)	209, 333, 369, 593, 837
MaeIII	GTNAC	1 cut(s)	832
MalI	GATC	4 cut(s)	118, 479, 618, 756
MboI	GATC	4 cut(s)	116, 477, 616, 754
MboII	GAAGA	9 cut(s)	50, 126, 197, 200, 206, 209, 441, 755, 808
MfeI	CAATTG	3 cut(s)	93, 484, 663
MhlI	GDGCHC	2 cut(s)	24, 802
MlyI	GAGTC	1 cut(s)	707
MmeI	TCCRAC	1 cut(s)	135
MseI	TTAA	5 cut(s)	137, 410, 423, 602, 726
MslI	CAYNNNNRTG	1 cut(s)	297
MspA1I	CMGCKG	3 cut(s)	35, 760, 794
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	1 cut(s)	264
MunI	CAATTG	3 cut(s)	93, 484, 663
MwoI	GCNNNNNNNGC	3 cut(s)	28, 248, 797
NciI	CCSGG	1 cut(s)	264
NcoI	CCATGG	1 cut(s)	226
NdeII	GATC	4 cut(s)	116, 477, 616, 754
NlaIII	CATG	5 cut(s)	230, 302, 431, 640, 779
NlaIV	GGNNCC	1 cut(s)	159
NspI	RCATGY	1 cut(s)	302
PagI	TCATGA	1 cut(s)	427
PciSI	GCTCTTC	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	165
PfoI	TCCNGGA	1 cut(s)	262
PkrI	GCNGC	3 cut(s)	8, 571, 793
PleI	GAGTC	1 cut(s)	706
PpsI	GAGTC	1 cut(s)	706
PshBI	ATTAAT	3 cut(s)	410, 423, 726
PsiI	TTATAA	1 cut(s)	459
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	2 cut(s)	74, 157
PstI	CTGCAG	1 cut(s)	536
PvuII	CAGCTG	3 cut(s)	35, 760, 794
RsaI	GTAC	2 cut(s)	13, 391
RsaNI	GTAC	2 cut(s)	12, 390
RseI	CAYNNNNRTG	1 cut(s)	297
SalI	GTCGAC	1 cut(s)	489
SapI	GCTCTTC	1 cut(s)	192
SaqAI	TTAA	5 cut(s)	137, 410, 423, 602, 726
SatI	GCNGC	3 cut(s)	7, 570, 792
Sau3AI	GATC	4 cut(s)	116, 477, 616, 754
Sau96I	GGNCC	2 cut(s)	74, 157
ScaI	AGTACT	1 cut(s)	391
SchI	GAGTC	1 cut(s)	707
ScrFI	CCNGG	1 cut(s)	264
SduI	GDGCHC	2 cut(s)	24, 802
SfaNI	GCATC	2 cut(s)	231, 308
SfcI	CTRYAG	2 cut(s)	130, 532
SinI	GGWCC	2 cut(s)	74, 157
SmiMI	CAYNNNNRTG	1 cut(s)	297
SspMI	CTAG	5 cut(s)	209, 333, 369, 593, 837
StyD4I	CCNGG	1 cut(s)	262
StyI	CCWWGG	3 cut(s)	109, 226, 786
TaqI	TCGA	1 cut(s)	490
TatI	WGTACW	2 cut(s)	11, 389
TfiI	GAWTC	1 cut(s)	165
Tru1I	TTAA	5 cut(s)	137, 410, 423, 602, 726
Tru9I	TTAA	5 cut(s)	137, 410, 423, 602, 726
TscAI	CASTG	2 cut(s)	29, 541
TseI	GCWGC	3 cut(s)	6, 569, 791
TspDTI	ATGAA	4 cut(s)	447, 518, 756, 792
TspRI	CASTG	2 cut(s)	29, 541
VpaK11BI	GGWCC	2 cut(s)	74, 157
VspI	ATTAAT	3 cut(s)	410, 423, 726
XapI	RAATTY	1 cut(s)	550
XceI	RCATGY	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	490
XspI	CTAG	5 cut(s)	209, 333, 369, 593, 837
ZrmI	AGTACT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.