pycom06g21020
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0011275
Physical Location & Seq
Reverse (-)
23832584 .. 23834077
1494 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g21020.1

Sequence Viewer

Length: 912 bp
ATGGTCGTTGTAGAATTAGCTCTAATAAAAAAAAAAAAAAAAAAAAAAACACTTGAAGATCATAAACACATAATTAAGATGTGCACTAGAGGCCATTGGAGGCCAGCTGAAGACGAGAAGCTTAGGGAGTTGGTGGAACGATATGGACCTCATAACTGGAACGCAATAGCAGAAAAGCTCCAAGGAAGATCAGGAAAAAGCTGTAGGTTGAGATGGTTCAATCAGTTGGATCCAAGAATCAATAGGAACCCTTTTACAGAAGAGGAAGAAGAGCGTCTCCTAGCTTCTCACCGCATCCATGGAAATAGATGGGCTGTTATTGCAAGGCTTTTCCCTGGACGTACAGATAACGCAGTCAAGAACCATTGGCATGTCATCATGGCACGCAGGTGCAGAGAAAGATCTAGGCTTAATCACGCCAAATTAATAAGGAATACTTCTAGTATTACTGCTGCTATTACGGCTCAAACCTCGTTCATGAGTATCAATACTAACAATAATGAACCAAAATCCTCTTCAAAACAAGACCATCCCCTGCAGATCAATTGCAATATTGGCACGTGGAACCTGGATTCATATAATTATATTGGGAAATACTACTCATACAACGACAGAAATTATCATCAGTATCGGCCAGCTTTCACTCATGACCCTCGTCCTCTCTTTCCAAAAGAGTTCTATCCGAATACCTGCAGTGTCACAATGCACCAAGATCATAATAAAGATCAGCCAATTGAGTTTTACGATTTTCTTCAAGTAAATACTGAGTCTAATGGAAGTGAAGTGATAGATAACGTAAGAAAGGATGAGGAGGAGGTGGATCAGGAAGGTACGGGACAACAGAACATAAGCAACGTAGCCGGTCTTCCTTTTATCGATTTCTTATCTGTTAATAATGGAACTTCTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009832 GO:0009834 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042546 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901347 GO:1901348 GO:1901363 GO:1901698 GO:1901700 GO:1902074 GO:1903338 GO:1903339 GO:1903340 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2000652 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

304

Amino Acids

35.42

Weight (kDa)

9.08

Isoelectric Point (pI)

59.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 30 - 76 3.5e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 33 - 93 9e-19 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 82 - 124 9.1e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 85 - 128 9.1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011275)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17950 AT1G73410 AT1G73410
fragaria_vesca FvH4_5g17970
malus_domestica MD06G1235300.v1.1 MD14G1242300.v1.1
prunus_persica Prupe.5G240000_v2.0.a1
pyrus_communis pycom06g21020 pycom14g20370
rosa_chinensis RchiOBHm_Chr7g0177631
rosa_laevigata RLG00000005518
rosa_multiflora Rmu_ssc0000330.1_g000016
rosa_roxburghii Rroxscaffold_3G00275710
rosa_rugosa Rorug06G0408100 Rorug06G0408200
rosa_samantha Rh7AG007400 Rh7BG007400 Rh7CG007900 Rh7DG007600
rosa_wichuraiana Rw7G000630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 378
Acc36I ACCTGC 2 cut(s) 378, 698
AciI CCGC 1 cut(s) 292
AclWI GGATC 3 cut(s) 224, 237, 828
AcoI YGGCCR 1 cut(s) 632
AcuI CTGAAG 1 cut(s) 129
AcvI CACGTG 1 cut(s) 561
AfaI GTAC 2 cut(s) 343, 832
AgsI TTSAA 4 cut(s) 56, 220, 519, 755
AjnI CCWGG 2 cut(s) 334, 567
AjuI GAANNNNNNNTTGG 2 cut(s) 499, 531
AleI CACNNNNGTG 1 cut(s) 388
AluBI AGCT 7 cut(s) 20, 107, 121, 178, 201, 284, 638
AluI AGCT 7 cut(s) 20, 107, 121, 178, 201, 284, 638
Alw21I GWGCWC 1 cut(s) 86
Alw26I GTCTC 1 cut(s) 281
Alw44I GTGCAC 1 cut(s) 82
AlwI GGATC 3 cut(s) 224, 237, 828
AoxI GGCC 3 cut(s) 91, 101, 632
ApaLI GTGCAC 1 cut(s) 82
ApeKI GCWGC 1 cut(s) 452
AseI ATTAAT 1 cut(s) 425
Asp700I GAANNNNTTC 1 cut(s) 904
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 281
AvaII GGWCC 1 cut(s) 146
BaeGI GKGCMC 1 cut(s) 86
BamHI GGATCC 1 cut(s) 229
BarI GAAGNNNNNNTAC 2 cut(s) 849, 881
BbrPI CACGTG 1 cut(s) 561
BbsI GAAGAC 2 cut(s) 117, 857
Bbv12I GWGCWC 1 cut(s) 86
BbvI GCAGC 1 cut(s) 439
BccI CCATC 3 cut(s) 207, 303, 537
BceAI ACGGC 1 cut(s) 477
BciT130I CCWGG 2 cut(s) 336, 569
BcoDI GTCTC 1 cut(s) 281
BfaI CTAG 4 cut(s) 87, 281, 405, 441
BfmI CTRYAG 3 cut(s) 202, 536, 691
BfuAI ACCTGC 2 cut(s) 378, 698
BglII AGATCT 1 cut(s) 401
BisI GCNGC 1 cut(s) 453
BlsI GCNGC 1 cut(s) 454
Bme1390I CCNGG 2 cut(s) 336, 569
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 3 cut(s) 231, 248, 566
BmrFI CCNGG 2 cut(s) 336, 569
BmsI GCATC 1 cut(s) 303
BoxI GACNNNNGTC 1 cut(s) 654
BpiI GAAGAC 2 cut(s) 117, 857
Bpu10I CCTNAGC 1 cut(s) 122
Bsa29I ATCGAT 1 cut(s) 876
BsaAI YACGTR 1 cut(s) 561
BsaJI CCNNGG 3 cut(s) 181, 298, 334
Bse118I RCCGGY 1 cut(s) 860
Bse1I ACTGG 1 cut(s) 161
BseBI CCWGG 2 cut(s) 336, 569
BseCI ATCGAT 1 cut(s) 876
BseDI CCNNGG 3 cut(s) 181, 298, 334
BseGI GGATG 3 cut(s) 294, 529, 811
BseMII CTCAG 1 cut(s) 756
BseNI ACTGG 1 cut(s) 161
BseRI GAGGAG 2 cut(s) 824, 827
BseSI GKGCMC 1 cut(s) 86
BseXI GCAGC 1 cut(s) 439
BsgI GTGCAG 1 cut(s) 412
BshFI GGCC 3 cut(s) 93, 103, 634
BshVI ATCGAT 1 cut(s) 876
BsiHKAI GWGCWC 1 cut(s) 86
BsiSI CCGG 1 cut(s) 861
BslFI GGGAC 1 cut(s) 849
BsmAI GTCTC 1 cut(s) 281
BsmBI CGTCTC 1 cut(s) 281
BsmFI GGGAC 1 cut(s) 849
BsnI GGCC 3 cut(s) 93, 103, 634
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 8 cut(s) 58, 188, 229, 401, 540, 712, 724, 820
Bsp19I CCATGG 1 cut(s) 298
BspACI CCGC 1 cut(s) 292
BspANI GGCC 3 cut(s) 93, 103, 634
BspCNI CTCAG 1 cut(s) 757
BspDI ATCGAT 1 cut(s) 876
BspHI TCATGA 2 cut(s) 477, 646
BspLI GGNNCC 3 cut(s) 231, 248, 566
BspMAI CTGCAG 2 cut(s) 540, 695
BspMI ACCTGC 2 cut(s) 378, 698
BspPI GGATC 3 cut(s) 224, 237, 828
BspQI GCTCTTC 1 cut(s) 264
BsrFI RCCGGY 1 cut(s) 860
BsrI ACTGG 1 cut(s) 161
BssAI RCCGGY 1 cut(s) 860
BssECI CCNNGG 3 cut(s) 181, 298, 334
BssMI GATC 8 cut(s) 58, 188, 229, 401, 540, 712, 724, 820
BssT1I CCWWGG 2 cut(s) 181, 298
Bst2UI CCWGG 2 cut(s) 336, 569
Bst6I CTCTTC 3 cut(s) 255, 264, 520
BstBAI YACGTR 1 cut(s) 561
BstC8I GCNNGC 3 cut(s) 105, 385, 636
BstDEI CTNAG 2 cut(s) 122, 765
BstDSI CCRYGG 1 cut(s) 298
BstF5I GGATG 3 cut(s) 294, 529, 811
BstKTI GATC 8 cut(s) 61, 191, 232, 404, 543, 715, 727, 823
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 8 cut(s) 58, 188, 229, 401, 540, 712, 724, 820
BstMWI GCNNNNNNNGC 4 cut(s) 90, 320, 461, 555
BstNI CCWGG 2 cut(s) 336, 569
BstNSI RCATGY 1 cut(s) 374
BstPAI GACNNNNGTC 1 cut(s) 654
BstSCI CCNGG 2 cut(s) 334, 567
BstSFI CTRYAG 3 cut(s) 202, 536, 691
BstSLI GKGCMC 1 cut(s) 86
BstV1I GCAGC 1 cut(s) 439
BstV2I GAAGAC 2 cut(s) 117, 857
BstX2I RGATCY 2 cut(s) 229, 401
BstYI RGATCY 2 cut(s) 229, 401
Bsu15I ATCGAT 1 cut(s) 876
BsuRI GGCC 3 cut(s) 93, 103, 634
BsuTUI ATCGAT 1 cut(s) 876
BtgI CCRYGG 1 cut(s) 298
BtsCI GGATG 3 cut(s) 294, 529, 811
BtsI GCAGTG 1 cut(s) 700
BtsIMutI CAGTG 1 cut(s) 700
BveI ACCTGC 2 cut(s) 378, 698
Cac8I GCNNGC 3 cut(s) 105, 385, 636
CciI TCATGA 2 cut(s) 477, 646
Cfr10I RCCGGY 1 cut(s) 860
Cfr13I GGNCC 1 cut(s) 146
ClaI ATCGAT 1 cut(s) 876
CseI GACGC 1 cut(s) 263
Csp6I GTAC 2 cut(s) 342, 831
CviAII CATG 5 cut(s) 299, 371, 379, 478, 647
CviQI GTAC 2 cut(s) 342, 831
DdeI CTNAG 2 cut(s) 122, 765
DpnI GATC 8 cut(s) 60, 190, 231, 403, 542, 714, 726, 822
DpnII GATC 8 cut(s) 58, 188, 229, 401, 540, 712, 724, 820
EaeI YGGCCR 1 cut(s) 632
Eam1104I CTCTTC 3 cut(s) 255, 264, 520
EarI CTCTTC 3 cut(s) 255, 264, 520
Eco130I CCWWGG 2 cut(s) 181, 298
Eco47I GGWCC 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 129
Eco72I CACGTG 1 cut(s) 561
EcoRII CCWGG 2 cut(s) 334, 567
EcoT14I CCWWGG 2 cut(s) 181, 298
ErhI CCWWGG 2 cut(s) 181, 298
Esp3I CGTCTC 1 cut(s) 281
FaeI CATG 5 cut(s) 302, 374, 382, 481, 650
FalI AAGNNNNNCTT 2 cut(s) 421, 453
FaqI GGGAC 1 cut(s) 849
FatI CATG 5 cut(s) 298, 370, 378, 477, 646
Fnu4HI GCNGC 1 cut(s) 453
FokI GGATG 3 cut(s) 281, 516, 818
Fsp4HI GCNGC 1 cut(s) 453
FspBI CTAG 4 cut(s) 87, 281, 405, 441
GluI GCNGC 1 cut(s) 453
HaeIII GGCC 3 cut(s) 93, 103, 634
HapII CCGG 1 cut(s) 861
HgaI GACGC 1 cut(s) 263
Hin1II CATG 5 cut(s) 302, 374, 382, 481, 650
HindIII AAGCTT 1 cut(s) 119
HinfI GANTC 3 cut(s) 237, 572, 767
HpaII CCGG 1 cut(s) 861
HphI GGTGA 1 cut(s) 281
Hpy166II GTNNAC 1 cut(s) 84
Hpy188I TCNGA 1 cut(s) 684
Hpy188III TCNNGA 5 cut(s) 192, 358, 478, 647, 824
Hpy8I GTNNAC 1 cut(s) 84
HpyAV CCTTC 1 cut(s) 821
HpyCH4IV ACGT 4 cut(s) 340, 560, 795, 855
HpyCH4V TGCA 7 cut(s) 84, 323, 393, 538, 549, 693, 706
HpyF10VI GCNNNNNNNGC 4 cut(s) 90, 320, 461, 555
HpyF3I CTNAG 2 cut(s) 122, 765
HpySE526I ACGT 4 cut(s) 340, 560, 795, 855
Hsp92II CATG 5 cut(s) 302, 374, 382, 481, 650
Kzo9I GATC 8 cut(s) 58, 188, 229, 401, 540, 712, 724, 820
LguI GCTCTTC 1 cut(s) 264
LmnI GCTCC 1 cut(s) 183
Lsp1109I GCAGC 1 cut(s) 439
LweI GCATC 1 cut(s) 303
MaeI CTAG 4 cut(s) 87, 281, 405, 441
MaeII ACGT 4 cut(s) 340, 560, 795, 855
MaeIII GTNAC 1 cut(s) 697
MalI GATC 8 cut(s) 60, 190, 231, 403, 542, 714, 726, 822
MboI GATC 8 cut(s) 58, 188, 229, 401, 540, 712, 724, 820
MfeI CAATTG 2 cut(s) 544, 732
MflI RGATCY 2 cut(s) 229, 401
MhlI GDGCHC 1 cut(s) 86
MluCI AATT 7 cut(s) 14, 72, 422, 544, 580, 616, 732
MlyI GAGTC 1 cut(s) 776
MmeI TCCRAC 1 cut(s) 207
MroXI GAANNNNTTC 1 cut(s) 904
MseI TTAA 4 cut(s) 75, 411, 425, 891
MslI CAYNNNNRTG 2 cut(s) 369, 388
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 1 cut(s) 861
MspR9I CCNGG 2 cut(s) 336, 569
MunI CAATTG 2 cut(s) 544, 732
MvaI CCWGG 2 cut(s) 336, 569
MwoI GCNNNNNNNGC 4 cut(s) 90, 320, 461, 555
NcoI CCATGG 1 cut(s) 298
NdeII GATC 8 cut(s) 58, 188, 229, 401, 540, 712, 724, 820
NlaIII CATG 5 cut(s) 302, 374, 382, 481, 650
NlaIV GGNNCC 3 cut(s) 231, 248, 566
NmuCI GTSAC 1 cut(s) 697
NspI RCATGY 1 cut(s) 374
OliI CACNNNNGTG 1 cut(s) 388
PagI TCATGA 2 cut(s) 477, 646
PaqCI CACCTGC 1 cut(s) 378
PciSI GCTCTTC 1 cut(s) 264
PdmI GAANNNNTTC 1 cut(s) 904
PfeI GAWTC 2 cut(s) 237, 572
PkrI GCNGC 1 cut(s) 454
PleI GAGTC 1 cut(s) 775
PmaCI CACGTG 1 cut(s) 561
PmlI CACGTG 1 cut(s) 561
PpsI GAGTC 1 cut(s) 775
Ppu21I YACGTR 1 cut(s) 561
PshAI GACNNNNGTC 1 cut(s) 654
PshBI ATTAAT 1 cut(s) 425
Psp6I CCWGG 2 cut(s) 334, 567
PspCI CACGTG 1 cut(s) 561
PspGI CCWGG 2 cut(s) 334, 567
PspN4I GGNNCC 3 cut(s) 231, 248, 566
PspPI GGNCC 1 cut(s) 146
PstI CTGCAG 2 cut(s) 540, 695
PsuI RGATCY 2 cut(s) 229, 401
PvuII CAGCTG 1 cut(s) 107
RsaI GTAC 2 cut(s) 343, 832
RsaNI GTAC 2 cut(s) 342, 831
RseI CAYNNNNRTG 2 cut(s) 369, 388
SapI GCTCTTC 1 cut(s) 264
SaqAI TTAA 4 cut(s) 75, 411, 425, 891
SatI GCNGC 1 cut(s) 453
Sau3AI GATC 8 cut(s) 58, 188, 229, 401, 540, 712, 724, 820
Sau96I GGNCC 1 cut(s) 146
SchI GAGTC 1 cut(s) 776
ScrFI CCNGG 2 cut(s) 336, 569
SduI GDGCHC 1 cut(s) 86
SfaNI GCATC 1 cut(s) 303
SfcI CTRYAG 3 cut(s) 202, 536, 691
SinI GGWCC 1 cut(s) 146
SmiMI CAYNNNNRTG 2 cut(s) 369, 388
Sse9I AATT 7 cut(s) 14, 72, 422, 544, 580, 616, 732
SsiI CCGC 1 cut(s) 292
SspI AATATT 1 cut(s) 553
SspMI CTAG 4 cut(s) 87, 281, 405, 441
StyD4I CCNGG 2 cut(s) 334, 567
StyI CCWWGG 2 cut(s) 181, 298
TaiI ACGT 4 cut(s) 343, 563, 798, 858
TaqI TCGA 1 cut(s) 876
TasI AATT 7 cut(s) 14, 72, 422, 544, 580, 616, 732
TfiI GAWTC 2 cut(s) 237, 572
Tru1I TTAA 4 cut(s) 75, 411, 425, 891
Tru9I TTAA 4 cut(s) 75, 411, 425, 891
TscAI CASTG 1 cut(s) 700
TseFI GTSAC 1 cut(s) 697
TseI GCWGC 1 cut(s) 452
Tsp45I GTSAC 1 cut(s) 697
TspDTI ATGAA 4 cut(s) 466, 516, 564, 897
TspRI CASTG 1 cut(s) 700
VneI GTGCAC 1 cut(s) 82
VpaK11BI GGWCC 1 cut(s) 146
VspI ATTAAT 1 cut(s) 425
XceI RCATGY 1 cut(s) 374
XmnI GAANNNNTTC 1 cut(s) 904
XspI CTAG 4 cut(s) 87, 281, 405, 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.