Rh7AG007400
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0011275
Physical Location & Seq
Forward (+)
501903 .. 504556
2654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG007400.1

Sequence Viewer

Length: 669 bp
ATGTGCAGCAGTACAAGAGGGCACTGGAGGCCAGCTGAAGACGAGAAGCTTAGGGAGTTGGTGGAACGATATGGACCTCATAACTGGAACGCAATTGCAGAAAAGCTCCAAGGAAGATCAGGAAAGAGCTGTAGGTTAAGATGGTTCAATCAGTTGGACCCGAGAATCAACAGAAACCCTTTTAGCGAAGAGGAAGAAGAGCGTCTTCTAGCTTCTCATCGCATCCATGGAAATAGATGGGCTGTTATTGCAAGGCTTTTTCCCGGACGCACCGACAATGCAGTCAAGAACCATTGGCATGTCATTATGGCTCGCAGATGCAGAGAGAGGTCTAGGCTTCACCATCATCTTCACTCAAAAGGGATGACTAGGACTTCTACTAACAATAGTACTCCTCACCATCTAGTATTAATGAGTTCCATTAATCATGATGAATTATCAAAATCCTCTTCAAATTATAAACAAGACTTGCAGATGATCCTCAATTGTCGACAGGAGACGATGAATGACAATTCTTACATTGGGAATTACTGCAGTGCTACTGAAAGAAATTTTCACTATTATCCTGCTGCTTTTACTCACAATACTACTCTAGCTCCTTTAATTCCAAACAAAGATCAGTTTTATCCCAATACCATGCACCAAGGTAATTTATTGCGCTATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009832 GO:0009834 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042546 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901347 GO:1901348 GO:1901363 GO:1901698 GO:1901700 GO:1902074 GO:1903338 GO:1903339 GO:1903340 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2000652 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

222

Amino Acids

26.17

Weight (kDa)

9.64

Isoelectric Point (pI)

58.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 6 - 52 2.1e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 9 - 69 4.5e-19 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 58 - 100 1.3e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 61 - 104 1.4e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011275)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17950 AT1G73410 AT1G73410
fragaria_vesca FvH4_5g17970
malus_domestica MD06G1235300.v1.1 MD14G1242300.v1.1
prunus_persica Prupe.5G240000_v2.0.a1
pyrus_communis pycom06g21020 pycom14g20370
rosa_chinensis RchiOBHm_Chr7g0177631
rosa_laevigata RLG00000005518
rosa_multiflora Rmu_ssc0000330.1_g000016
rosa_roxburghii Rroxscaffold_3G00275710
rosa_rugosa Rorug06G0408100 Rorug06G0408200
rosa_samantha Rh7AG007400 Rh7BG007400 Rh7CG007900 Rh7DG007600
rosa_wichuraiana Rw7G000630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 459
AasI GACNNNNNNGTC 1 cut(s) 281
AccI GTMKAC 1 cut(s) 490
AclWI GGATC 1 cut(s) 472
AcsI RAATTY 1 cut(s) 550
AcuI CTGAAG 1 cut(s) 57
AfaI GTAC 2 cut(s) 13, 391
AgsI TTSAA 2 cut(s) 148, 453
AluBI AGCT 6 cut(s) 35, 49, 106, 129, 212, 596
AluI AGCT 6 cut(s) 35, 49, 106, 129, 212, 596
Alw26I GTCTC 1 cut(s) 491
AlwI GGATC 1 cut(s) 472
Ama87I CYCGRG 1 cut(s) 160
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 2 cut(s) 6, 569
ApoI RAATTY 1 cut(s) 550
AseI ATTAAT 2 cut(s) 410, 423
AspLEI GCGC 1 cut(s) 660
AspS9I GGNCC 2 cut(s) 74, 157
AsuC2I CCSGG 1 cut(s) 264
AsuHPI GGTGA 2 cut(s) 332, 389
AvaI CYCGRG 1 cut(s) 160
AvaII GGWCC 2 cut(s) 74, 157
BaeGI GKGCMC 1 cut(s) 24
BbsI GAAGAC 2 cut(s) 45, 197
BbvI GCAGC 2 cut(s) 18, 556
BccI CCATC 4 cut(s) 135, 231, 351, 408
BcnI CCSGG 1 cut(s) 264
BcoDI GTCTC 1 cut(s) 491
BfaI CTAG 5 cut(s) 209, 333, 369, 404, 593
BfmI CTRYAG 2 cut(s) 130, 532
BisI GCNGC 2 cut(s) 7, 570
BlsI GCNGC 2 cut(s) 8, 571
BmcAI AGTACT 1 cut(s) 391
Bme1390I CCNGG 1 cut(s) 264
Bme18I GGWCC 2 cut(s) 74, 157
BmeT110I CYCGRG 1 cut(s) 160
BmgT120I GGNCC 2 cut(s) 74, 157
BmiI GGNNCC 1 cut(s) 159
BmrFI CCNGG 1 cut(s) 264
BmsI GCATC 2 cut(s) 231, 308
BpiI GAAGAC 2 cut(s) 45, 197
BpmI CTGGAG 1 cut(s) 46
Bpu10I CCTNAGC 1 cut(s) 50
BpuMI CCSGG 1 cut(s) 264
BsaJI CCNNGG 3 cut(s) 109, 226, 643
BsaXI ACNNNNNCTCC 2 cut(s) 580, 610
Bse1I ACTGG 2 cut(s) 29, 89
BseDI CCNNGG 3 cut(s) 109, 226, 643
BseGI GGATG 2 cut(s) 222, 369
BseNI ACTGG 2 cut(s) 29, 89
BseRI GAGGAG 1 cut(s) 384
BseSI GKGCMC 1 cut(s) 24
BseXI GCAGC 2 cut(s) 18, 556
BsgI GTGCAG 1 cut(s) 25
BshFI GGCC 1 cut(s) 31
BsiHKCI CYCGRG 1 cut(s) 160
BsiSI CCGG 1 cut(s) 264
BsmAI GTCTC 1 cut(s) 491
BsmBI CGTCTC 1 cut(s) 491
BsnI GGCC 1 cut(s) 31
BsoBI CYCGRG 1 cut(s) 160
Bsp1286I GDGCHC 1 cut(s) 24
Bsp143I GATC 3 cut(s) 116, 477, 616
Bsp19I CCATGG 1 cut(s) 226
BspANI GGCC 1 cut(s) 31
BspHI TCATGA 1 cut(s) 427
BspLI GGNNCC 1 cut(s) 159
BspMAI CTGCAG 1 cut(s) 536
BspPI GGATC 1 cut(s) 472
BspQI GCTCTTC 1 cut(s) 192
BsrI ACTGG 2 cut(s) 29, 89
BssECI CCNNGG 3 cut(s) 109, 226, 643
BssMI GATC 3 cut(s) 116, 477, 616
BssT1I CCWWGG 3 cut(s) 109, 226, 643
Bst6I CTCTTC 3 cut(s) 183, 192, 454
BstC8I GCNNGC 2 cut(s) 33, 313
BstDEI CTNAG 1 cut(s) 50
BstDSI CCRYGG 1 cut(s) 226
BstF5I GGATG 2 cut(s) 222, 369
BstHHI GCGC 1 cut(s) 660
BstKTI GATC 3 cut(s) 119, 480, 619
BstMAI GTCTC 1 cut(s) 491
BstMBI GATC 3 cut(s) 116, 477, 616
BstMWI GCNNNNNNNGC 2 cut(s) 28, 248
BstNSI RCATGY 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 262
BstSFI CTRYAG 2 cut(s) 130, 532
BstSLI GKGCMC 1 cut(s) 24
BstV1I GCAGC 2 cut(s) 18, 556
BstV2I GAAGAC 2 cut(s) 45, 197
BsuRI GGCC 1 cut(s) 31
BtgI CCRYGG 1 cut(s) 226
BtgZI GCGATG 1 cut(s) 203
BtsCI GGATG 2 cut(s) 222, 369
BtsI GCAGTG 1 cut(s) 541
BtsIMutI CAGTG 2 cut(s) 22, 541
Cac8I GCNNGC 2 cut(s) 33, 313
CciI TCATGA 1 cut(s) 427
CfoI GCGC 1 cut(s) 660
Cfr13I GGNCC 2 cut(s) 74, 157
CseI GACGC 2 cut(s) 191, 276
Csp6I GTAC 2 cut(s) 12, 390
CviAII CATG 4 cut(s) 227, 299, 428, 637
CviQI GTAC 2 cut(s) 12, 390
DdeI CTNAG 1 cut(s) 50
DpnI GATC 3 cut(s) 118, 479, 618
DpnII GATC 3 cut(s) 116, 477, 616
DrdI GACNNNNNNGTC 1 cut(s) 281
DseDI GACNNNNNNGTC 1 cut(s) 281
Eam1104I CTCTTC 3 cut(s) 183, 192, 454
EarI CTCTTC 3 cut(s) 183, 192, 454
Eco130I CCWWGG 3 cut(s) 109, 226, 643
Eco47I GGWCC 2 cut(s) 74, 157
Eco57I CTGAAG 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 160
EcoT14I CCWWGG 3 cut(s) 109, 226, 643
ErhI CCWWGG 3 cut(s) 109, 226, 643
Esp3I CGTCTC 1 cut(s) 491
FaeI CATG 4 cut(s) 230, 302, 431, 640
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FatI CATG 4 cut(s) 226, 298, 427, 636
FblI GTMKAC 1 cut(s) 490
Fnu4HI GCNGC 2 cut(s) 7, 570
FokI GGATG 2 cut(s) 209, 376
Fsp4HI GCNGC 2 cut(s) 7, 570
FspBI CTAG 5 cut(s) 209, 333, 369, 404, 593
GlaI GCGC 1 cut(s) 659
GluI GCNGC 2 cut(s) 7, 570
GsuI CTGGAG 1 cut(s) 46
HaeIII GGCC 1 cut(s) 31
HapII CCGG 1 cut(s) 264
HgaI GACGC 2 cut(s) 191, 276
HhaI GCGC 1 cut(s) 660
Hin1II CATG 4 cut(s) 230, 302, 431, 640
Hin6I GCGC 1 cut(s) 658
HinP1I GCGC 1 cut(s) 658
HincII GTYRAC 1 cut(s) 491
HindII GTYRAC 1 cut(s) 491
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 1 cut(s) 165
HpaII CCGG 1 cut(s) 264
HphI GGTGA 2 cut(s) 332, 389
Hpy166II GTNNAC 1 cut(s) 491
Hpy188III TCNNGA 3 cut(s) 120, 286, 428
Hpy8I GTNNAC 1 cut(s) 491
HpyCH4V TGCA 8 cut(s) 6, 98, 251, 281, 321, 472, 534, 640
HpyF10VI GCNNNNNNNGC 2 cut(s) 28, 248
HpyF3I CTNAG 1 cut(s) 50
Hsp92II CATG 4 cut(s) 230, 302, 431, 640
HspAI GCGC 1 cut(s) 658
Kzo9I GATC 3 cut(s) 116, 477, 616
LguI GCTCTTC 1 cut(s) 192
LmnI GCTCC 2 cut(s) 111, 601
LpnPI CCDG 7 cut(s) 10, 45, 70, 105, 277, 479, 579
Lsp1109I GCAGC 2 cut(s) 18, 556
LweI GCATC 2 cut(s) 231, 308
MaeI CTAG 5 cut(s) 209, 333, 369, 404, 593
MalI GATC 3 cut(s) 118, 479, 618
MboI GATC 3 cut(s) 116, 477, 616
MboII GAAGA 8 cut(s) 50, 126, 197, 200, 206, 209, 341, 441
MfeI CAATTG 2 cut(s) 93, 484
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 9 cut(s) 93, 434, 454, 484, 511, 526, 550, 603, 649
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 8 cut(s) 11, 21, 87, 184, 321, 405, 457, 491
MseI TTAA 4 cut(s) 137, 410, 423, 602
MslI CAYNNNNRTG 1 cut(s) 297
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 1 cut(s) 264
MspR9I CCNGG 1 cut(s) 264
MunI CAATTG 2 cut(s) 93, 484
MwoI GCNNNNNNNGC 2 cut(s) 28, 248
NciI CCSGG 1 cut(s) 264
NcoI CCATGG 1 cut(s) 226
NdeII GATC 3 cut(s) 116, 477, 616
NlaIII CATG 4 cut(s) 230, 302, 431, 640
NlaIV GGNNCC 1 cut(s) 159
NspI RCATGY 1 cut(s) 302
PagI TCATGA 1 cut(s) 427
PciSI GCTCTTC 1 cut(s) 192
PfeI GAWTC 1 cut(s) 165
PfoI TCCNGGA 1 cut(s) 262
PkrI GCNGC 2 cut(s) 8, 571
PshBI ATTAAT 2 cut(s) 410, 423
PsiI TTATAA 1 cut(s) 459
PspN4I GGNNCC 1 cut(s) 159
PspPI GGNCC 2 cut(s) 74, 157
PstI CTGCAG 1 cut(s) 536
PvuII CAGCTG 1 cut(s) 35
RsaI GTAC 2 cut(s) 13, 391
RsaNI GTAC 2 cut(s) 12, 390
RseI CAYNNNNRTG 1 cut(s) 297
SalI GTCGAC 1 cut(s) 489
SapI GCTCTTC 1 cut(s) 192
SaqAI TTAA 4 cut(s) 137, 410, 423, 602
SatI GCNGC 2 cut(s) 7, 570
Sau3AI GATC 3 cut(s) 116, 477, 616
Sau96I GGNCC 2 cut(s) 74, 157
ScaI AGTACT 1 cut(s) 391
ScrFI CCNGG 1 cut(s) 264
SduI GDGCHC 1 cut(s) 24
SfaNI GCATC 2 cut(s) 231, 308
SfcI CTRYAG 2 cut(s) 130, 532
SinI GGWCC 2 cut(s) 74, 157
SmiMI CAYNNNNRTG 1 cut(s) 297
Sse9I AATT 9 cut(s) 93, 434, 454, 484, 511, 526, 550, 603, 649
SspMI CTAG 5 cut(s) 209, 333, 369, 404, 593
StyD4I CCNGG 1 cut(s) 262
StyI CCWWGG 3 cut(s) 109, 226, 643
TaqI TCGA 1 cut(s) 490
TasI AATT 9 cut(s) 93, 434, 454, 484, 511, 526, 550, 603, 649
TatI WGTACW 2 cut(s) 11, 389
TfiI GAWTC 1 cut(s) 165
Tru1I TTAA 4 cut(s) 137, 410, 423, 602
Tru9I TTAA 4 cut(s) 137, 410, 423, 602
TscAI CASTG 2 cut(s) 29, 541
TseI GCWGC 2 cut(s) 6, 569
TspDTI ATGAA 2 cut(s) 447, 518
TspRI CASTG 2 cut(s) 29, 541
VpaK11BI GGWCC 2 cut(s) 74, 157
VspI ATTAAT 2 cut(s) 410, 423
XapI RAATTY 1 cut(s) 550
XceI RCATGY 1 cut(s) 302
XmiI GTMKAC 1 cut(s) 490
XspI CTAG 5 cut(s) 209, 333, 369, 404, 593
ZrmI AGTACT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.