Prupe.5G240000_v2.0.a1
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0011275
Physical Location & Seq
Reverse (-)
18100144 .. 18102311
2168 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G240000.1

Sequence Viewer

Length: 780 bp
ATGTGCACTAGAGGCCACTGGAGGCCAGCTGAAGACGAGAAGCTTAGGGAGTTGGTGGAACGTTATGGACCTCATAACTGGAACGCAATTGCAGAAAAGCTCCAAGGAAGATCAGGAAAGAGCTGTAGGTTGAGATGGTTCAATCAATTGGACCCAAGAATCAACAGGAACCCTTTCACAGAAGAGGAAGAAGAGCGTCTCCTAGCCTCTCACCGTATCCATGGCAATAGATGGGCTATTATTGCAAGGCTTTTCCCGGGACGCACTGATAACGCAGTGAAGAACCATTGGCATGTCATCATGGCACGCAGATGCAGAGAAAGATCTAGGCTTCACGCCAAATTAATAAGGACTTCTTCTACTACTAGTACTGCTGTGCCTCAATCGTCATTAACGGCGTCCAATATTAACATCGATATTCCAAAATCCTTTTCAAAACAAGATCACCTGCAAATCAACTGTGATATCACGAGGAACCTTGATGCATATAATTATTTTGGGAAATTCTATCCACCTTTCACTCATAATCCTCCTCCTCCTCCATTTCCAAGAGAGTTCTATTATCCAAATACCTGTGTCACAATGCACCAAGATCATAAAGATCAGCCAATTGAGTTTTATGATTTTCTCCAAGTAAATACTGAGTCGAATGGAAGTGAAGTGATAGATAATGCAAGAAAGGATGAGGAGGAGGTTGATCAGGAAGCTGTGGGACAACAGATAAGCAAGGCAGCTGGTGCTCCTTTTATAGAGTTCTTGTCTGTTAATGGAAGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009832 GO:0009834 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042546 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901347 GO:1901348 GO:1901363 GO:1901698 GO:1901700 GO:1902074 GO:1903338 GO:1903339 GO:1903340 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2000652 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

260

Amino Acids

30.05

Weight (kDa)

7.74

Isoelectric Point (pI)

71.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011275)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17950 AT1G73410 AT1G73410
fragaria_vesca FvH4_5g17970
malus_domestica MD06G1235300.v1.1 MD14G1242300.v1.1
prunus_persica Prupe.5G240000_v2.0.a1
pyrus_communis pycom06g21020 pycom14g20370
rosa_chinensis RchiOBHm_Chr7g0177631
rosa_laevigata RLG00000005518
rosa_multiflora Rmu_ssc0000330.1_g000016
rosa_roxburghii Rroxscaffold_3G00275710
rosa_rugosa Rorug06G0408100 Rorug06G0408200
rosa_samantha Rh7AG007400 Rh7BG007400 Rh7CG007900 Rh7DG007600
rosa_wichuraiana Rw7G000630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 456
Acc36I ACCTGC 1 cut(s) 456
AclI AACGTT 1 cut(s) 61
AcsI RAATTY 1 cut(s) 503
AcuI CTGAAG 1 cut(s) 51
AcyI GRCGYC 1 cut(s) 398
AfaI GTAC 1 cut(s) 370
AgsI TTSAA 2 cut(s) 142, 435
AhlI ACTAGT 1 cut(s) 365
AjuI GAANNNNNNNTTGG 2 cut(s) 415, 447
AluBI AGCT 6 cut(s) 29, 43, 100, 123, 707, 734
AluI AGCT 6 cut(s) 29, 43, 100, 123, 707, 734
Alw21I GWGCWC 2 cut(s) 8, 742
Alw26I GTCTC 1 cut(s) 203
Alw44I GTGCAC 1 cut(s) 4
Ama87I CYCGRG 1 cut(s) 256
AoxI GGCC 2 cut(s) 13, 23
ApaLI GTGCAC 1 cut(s) 4
ApeKI GCWGC 1 cut(s) 731
ApoI RAATTY 1 cut(s) 503
AseI ATTAAT 1 cut(s) 344
Asp700I GAANNNNTTC 1 cut(s) 173
AspS9I GGNCC 2 cut(s) 68, 151
AsuC2I CCSGG 2 cut(s) 257, 258
AsuHPI GGTGA 2 cut(s) 203, 437
AvaI CYCGRG 1 cut(s) 256
AvaII GGWCC 2 cut(s) 68, 151
BaeGI GKGCMC 1 cut(s) 8
BauI CACGAG 1 cut(s) 469
BbsI GAAGAC 1 cut(s) 39
Bbv12I GWGCWC 2 cut(s) 8, 742
BbvI GCAGC 1 cut(s) 743
BccI CCATC 2 cut(s) 129, 225
BceAI ACGGC 1 cut(s) 411
BciVI GTATCC 1 cut(s) 227
BclI TGATCA 1 cut(s) 697
BcnI CCSGG 2 cut(s) 257, 258
BcoDI GTCTC 1 cut(s) 203
BcuI ACTAGT 1 cut(s) 365
BfaI CTAG 4 cut(s) 9, 203, 327, 366
BfmI CTRYAG 1 cut(s) 124
BfuAI ACCTGC 1 cut(s) 456
BfuI GTATCC 1 cut(s) 227
BglII AGATCT 1 cut(s) 323
BisI GCNGC 1 cut(s) 732
BlsI GCNGC 1 cut(s) 733
BmcAI AGTACT 1 cut(s) 370
Bme1390I CCNGG 2 cut(s) 257, 258
Bme18I GGWCC 2 cut(s) 68, 151
BmeT110I CYCGRG 1 cut(s) 256
BmgT120I GGNCC 2 cut(s) 68, 151
BmiI GGNNCC 3 cut(s) 153, 170, 476
BmrFI CCNGG 2 cut(s) 257, 258
BmsI GCATC 2 cut(s) 302, 472
BpiI GAAGAC 1 cut(s) 39
BpmI CTGGAG 1 cut(s) 40
Bpu10I CCTNAGC 1 cut(s) 44
BpuMI CCSGG 2 cut(s) 257, 258
Bsa29I ATCGAT 1 cut(s) 414
BsaHI GRCGYC 1 cut(s) 398
BsaJI CCNNGG 3 cut(s) 103, 220, 256
Bse1I ACTGG 2 cut(s) 23, 83
BseCI ATCGAT 1 cut(s) 414
BseDI CCNNGG 3 cut(s) 103, 220, 256
BseGI GGATG 1 cut(s) 688
BseMII CTCAG 1 cut(s) 633
BseNI ACTGG 2 cut(s) 23, 83
BseRI GAGGAG 5 cut(s) 522, 525, 528, 701, 704
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 1 cut(s) 743
BshFI GGCC 2 cut(s) 15, 25
BshVI ATCGAT 1 cut(s) 414
BsiHKAI GWGCWC 2 cut(s) 8, 742
BsiHKCI CYCGRG 1 cut(s) 256
BsiSI CCGG 1 cut(s) 257
BslFI GGGAC 2 cut(s) 273, 726
BsmAI GTCTC 1 cut(s) 203
BsmBI CGTCTC 1 cut(s) 203
BsmFI GGGAC 2 cut(s) 273, 726
BsnI GGCC 2 cut(s) 15, 25
BsoBI CYCGRG 1 cut(s) 256
Bsp1286I GDGCHC 2 cut(s) 8, 742
Bsp143I GATC 6 cut(s) 110, 323, 442, 592, 601, 697
Bsp19I CCATGG 1 cut(s) 220
BspANI GGCC 2 cut(s) 15, 25
BspCNI CTCAG 1 cut(s) 634
BspDI ATCGAT 1 cut(s) 414
BspLI GGNNCC 3 cut(s) 153, 170, 476
BspMI ACCTGC 1 cut(s) 456
BspQI GCTCTTC 1 cut(s) 186
BsrI ACTGG 2 cut(s) 23, 83
BssECI CCNNGG 3 cut(s) 103, 220, 256
BssMI GATC 6 cut(s) 110, 323, 442, 592, 601, 697
BssNI GRCGYC 1 cut(s) 398
BssSI CACGAG 1 cut(s) 469
BssT1I CCWWGG 2 cut(s) 103, 220
Bst2BI CACGAG 1 cut(s) 469
Bst4CI ACNGT 2 cut(s) 215, 461
Bst6I CTCTTC 2 cut(s) 177, 186
BstACI GRCGYC 1 cut(s) 398
BstAPI GCANNNNNTGC 1 cut(s) 737
BstC8I GCNNGC 2 cut(s) 27, 307
BstDEI CTNAG 2 cut(s) 44, 642
BstDSI CCRYGG 1 cut(s) 220
BstF5I GGATG 1 cut(s) 688
BstKTI GATC 6 cut(s) 113, 326, 445, 595, 604, 700
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 6 cut(s) 110, 323, 442, 592, 601, 697
BstMWI GCNNNNNNNGC 3 cut(s) 12, 242, 737
BstNSI RCATGY 1 cut(s) 296
BstSCI CCNGG 2 cut(s) 255, 256
BstSFI CTRYAG 1 cut(s) 124
BstSLI GKGCMC 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 743
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 323
BstYI RGATCY 1 cut(s) 323
Bsu15I ATCGAT 1 cut(s) 414
BsuI GTATCC 1 cut(s) 227
BsuRI GGCC 2 cut(s) 15, 25
BsuTUI ATCGAT 1 cut(s) 414
BtgI CCRYGG 1 cut(s) 220
BtsCI GGATG 1 cut(s) 688
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 3 cut(s) 16, 264, 282
BveI ACCTGC 1 cut(s) 456
Cac8I GCNNGC 2 cut(s) 27, 307
Cfr13I GGNCC 2 cut(s) 68, 151
Cfr9I CCCGGG 1 cut(s) 256
ClaI ATCGAT 1 cut(s) 414
CseI GACGC 3 cut(s) 185, 270, 387
Csp6I GTAC 1 cut(s) 369
CviAII CATG 3 cut(s) 221, 293, 301
CviQI GTAC 1 cut(s) 369
DdeI CTNAG 2 cut(s) 44, 642
DpnI GATC 6 cut(s) 112, 325, 444, 594, 603, 699
DpnII GATC 6 cut(s) 110, 323, 442, 592, 601, 697
Eam1104I CTCTTC 2 cut(s) 177, 186
EarI CTCTTC 2 cut(s) 177, 186
Eco130I CCWWGG 2 cut(s) 103, 220
Eco32I GATATC 1 cut(s) 466
Eco47I GGWCC 2 cut(s) 68, 151
Eco57I CTGAAG 1 cut(s) 51
Eco88I CYCGRG 1 cut(s) 256
EcoRV GATATC 1 cut(s) 466
EcoT14I CCWWGG 2 cut(s) 103, 220
EcoT22I ATGCAT 1 cut(s) 487
ErhI CCWWGG 2 cut(s) 103, 220
Esp3I CGTCTC 1 cut(s) 203
FaeI CATG 3 cut(s) 224, 296, 304
FalI AAGNNNNNCTT 2 cut(s) 340, 372
FaqI GGGAC 2 cut(s) 273, 726
FatI CATG 3 cut(s) 220, 292, 300
FbaI TGATCA 1 cut(s) 697
Fnu4HI GCNGC 1 cut(s) 732
FokI GGATG 1 cut(s) 695
Fsp4HI GCNGC 1 cut(s) 732
FspBI CTAG 4 cut(s) 9, 203, 327, 366
GluI GCNGC 1 cut(s) 732
GsuI CTGGAG 1 cut(s) 40
HaeIII GGCC 2 cut(s) 15, 25
HapII CCGG 1 cut(s) 257
HgaI GACGC 3 cut(s) 185, 270, 387
Hin1I GRCGYC 1 cut(s) 398
Hin1II CATG 3 cut(s) 224, 296, 304
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 2 cut(s) 159, 644
HpaII CCGG 1 cut(s) 257
HphI GGTGA 2 cut(s) 203, 437
Hpy166II GTNNAC 1 cut(s) 6
Hpy188III TCNNGA 3 cut(s) 114, 469, 701
Hpy8I GTNNAC 1 cut(s) 6
HpyCH4III ACNGT 2 cut(s) 215, 461
HpyCH4IV ACGT 1 cut(s) 61
HpyCH4V TGCA 8 cut(s) 6, 92, 245, 315, 451, 485, 586, 674
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 242, 737
HpyF3I CTNAG 2 cut(s) 44, 642
HpySE526I ACGT 1 cut(s) 61
Hsp92I GRCGYC 1 cut(s) 398
Hsp92II CATG 3 cut(s) 224, 296, 304
Ksp22I TGATCA 1 cut(s) 697
Kzo9I GATC 6 cut(s) 110, 323, 442, 592, 601, 697
LguI GCTCTTC 1 cut(s) 186
LmnI GCTCC 2 cut(s) 105, 745
Lsp1109I GCAGC 1 cut(s) 743
LweI GCATC 2 cut(s) 302, 472
MaeI CTAG 4 cut(s) 9, 203, 327, 366
MaeII ACGT 1 cut(s) 61
MaeIII GTNAC 1 cut(s) 577
MalI GATC 6 cut(s) 112, 325, 444, 594, 603, 699
MboI GATC 6 cut(s) 110, 323, 442, 592, 601, 697
MboII GAAGA 7 cut(s) 44, 120, 194, 200, 203, 292, 348
MfeI CAATTG 3 cut(s) 87, 146, 609
MflI RGATCY 1 cut(s) 323
MhlI GDGCHC 2 cut(s) 8, 742
MluCI AATT 6 cut(s) 87, 146, 341, 490, 503, 609
MlyI GAGTC 1 cut(s) 653
Mph1103I ATGCAT 1 cut(s) 487
MroXI GAANNNNTTC 1 cut(s) 173
MseI TTAA 5 cut(s) 344, 392, 408, 765, 778
MslI CAYNNNNRTG 2 cut(s) 291, 310
MspA1I CMGCKG 2 cut(s) 29, 734
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 2 cut(s) 257, 258
MunI CAATTG 3 cut(s) 87, 146, 609
MwoI GCNNNNNNNGC 3 cut(s) 12, 242, 737
NciI CCSGG 2 cut(s) 257, 258
NcoI CCATGG 1 cut(s) 220
NdeII GATC 6 cut(s) 110, 323, 442, 592, 601, 697
NlaIII CATG 3 cut(s) 224, 296, 304
NlaIV GGNNCC 3 cut(s) 153, 170, 476
NmuCI GTSAC 1 cut(s) 577
NsiI ATGCAT 1 cut(s) 487
NspI RCATGY 1 cut(s) 296
PaqCI CACCTGC 1 cut(s) 456
PciSI GCTCTTC 1 cut(s) 186
PdmI GAANNNNTTC 1 cut(s) 173
PfeI GAWTC 1 cut(s) 159
PkrI GCNGC 1 cut(s) 733
PleI GAGTC 1 cut(s) 652
PpsI GAGTC 1 cut(s) 652
PshBI ATTAAT 1 cut(s) 344
Psp1406I AACGTT 1 cut(s) 61
PspN4I GGNNCC 3 cut(s) 153, 170, 476
PspPI GGNCC 2 cut(s) 68, 151
PsuI RGATCY 1 cut(s) 323
PvuII CAGCTG 2 cut(s) 29, 734
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
RseI CAYNNNNRTG 2 cut(s) 291, 310
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 5 cut(s) 344, 392, 408, 765, 778
SatI GCNGC 1 cut(s) 732
Sau3AI GATC 6 cut(s) 110, 323, 442, 592, 601, 697
Sau96I GGNCC 2 cut(s) 68, 151
ScaI AGTACT 1 cut(s) 370
SchI GAGTC 1 cut(s) 653
ScrFI CCNGG 2 cut(s) 257, 258
SduI GDGCHC 2 cut(s) 8, 742
SfaNI GCATC 2 cut(s) 302, 472
SfcI CTRYAG 1 cut(s) 124
SinI GGWCC 2 cut(s) 68, 151
SmaI CCCGGG 1 cut(s) 258
SmiMI CAYNNNNRTG 2 cut(s) 291, 310
SpeI ACTAGT 1 cut(s) 365
Sse9I AATT 6 cut(s) 87, 146, 341, 490, 503, 609
SspI AATATT 1 cut(s) 406
SspMI CTAG 4 cut(s) 9, 203, 327, 366
StyD4I CCNGG 2 cut(s) 255, 256
StyI CCWWGG 2 cut(s) 103, 220
TaaI ACNGT 2 cut(s) 215, 461
TaiI ACGT 1 cut(s) 64
TaqI TCGA 2 cut(s) 414, 647
TasI AATT 6 cut(s) 87, 146, 341, 490, 503, 609
TatI WGTACW 1 cut(s) 368
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 5 cut(s) 344, 392, 408, 765, 778
Tru9I TTAA 5 cut(s) 344, 392, 408, 765, 778
TscAI CASTG 3 cut(s) 23, 271, 282
TseFI GTSAC 1 cut(s) 577
TseI GCWGC 1 cut(s) 731
Tsp45I GTSAC 1 cut(s) 577
TspMI CCCGGG 1 cut(s) 256
TspRI CASTG 3 cut(s) 23, 271, 282
VneI GTGCAC 1 cut(s) 4
VpaK11BI GGWCC 2 cut(s) 68, 151
VspI ATTAAT 1 cut(s) 344
XapI RAATTY 1 cut(s) 503
XceI RCATGY 1 cut(s) 296
XmaI CCCGGG 1 cut(s) 256
XmnI GAANNNNTTC 1 cut(s) 173
XspI CTAG 4 cut(s) 9, 203, 327, 366
ZrmI AGTACT 1 cut(s) 370
Zsp2I ATGCAT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.