MD14G1242300.v1.1
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0011275
Physical Location & Seq
Reverse (-)
32091624 .. 32093381
1758 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1242300.v1.1.491

Sequence Viewer

Length: 816 bp
ATGTGCACTAGAGGCCATTGGAGGCCAGCTGAAGACGAGAAGCTTAGGGAGTTGGTGGAACGATATGGACCTCATAACTGGAACGCAATAGCAGAAAAGCTCCAAGGAAGATCAGGAAAAAGCTGTAGGTTGAGATGGTTCAATCAGTTGGACCCAAGAATCAACAGGAACCCTTTCACAGAAGAGGAAGAAGAGCGTCTCTTAGTTTCTCACCGCATCCATGGAAATAGATGGGCTGTTATTGCAAGGCTTTTCCCTGGACGTACCGATAACGCAGTCAAGAACCATTGGCATGTCATCATGGCACGCAGATGCAGAGAAAGATCTAGGCTTAATCACTCCAAATTAATAAGGAATACTTCCAGTATTACTGCTCAAACCTCATTCATGAGTATCATTACCAACAATAATGAACCAAAATCCTCTTCAAAACAAGACCATCCCCTGCAGATCAATTGCGATATCGGCACATGGAACCTTGATTCATATAATTATATTGGGAAATACTACTCATGCAGCGACAGAAATTATCACCAATATCGGCCAGCTTTCACTCATAACCCTCCTCCATTTCCAAAAGAGTTCTATCCCAATACCTGCAGTGTCACAATGCACCAAGATCATAATAAACATCAGCCAATTGAGTTTTACGATTTTCTCCAAGTAAATACTGAGTCTAATGGAAGTGAAGTGATAGATAATGCAAGAAAGGATGAGGAGGAGGTGGATCAGGAAGGTATGGGACAACAGAAAAGCACCGTGACCGGTCTTCCTTTTATCAATTTCTTAGCTGTTAATAATGGGACTTCTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009832 GO:0009834 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042546 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901347 GO:1901348 GO:1901363 GO:1901698 GO:1901700 GO:1902074 GO:1903338 GO:1903339 GO:1903340 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2000652 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

272

Amino Acids

31.69

Weight (kDa)

8.5

Isoelectric Point (pI)

62.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 4 - 50 2.9e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 7 - 67 7.3e-19 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 56 - 98 2.1e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 59 - 102 4.1e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011275)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17950 AT1G73410 AT1G73410
fragaria_vesca FvH4_5g17970
malus_domestica MD06G1235300.v1.1 MD14G1242300.v1.1
prunus_persica Prupe.5G240000_v2.0.a1
pyrus_communis pycom06g21020 pycom14g20370
rosa_chinensis RchiOBHm_Chr7g0177631
rosa_laevigata RLG00000005518
rosa_multiflora Rmu_ssc0000330.1_g000016
rosa_roxburghii Rroxscaffold_3G00275710
rosa_rugosa Rorug06G0408100 Rorug06G0408200
rosa_samantha Rh7AG007400 Rh7BG007400 Rh7CG007900 Rh7DG007600
rosa_wichuraiana Rw7G000630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 605
AciI CCGC 1 cut(s) 214
AclWI GGATC 1 cut(s) 735
AcoI YGGCCR 1 cut(s) 542
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 1 cut(s) 265
AgeI ACCGGT 1 cut(s) 764
AgsI TTSAA 2 cut(s) 142, 429
AjnI CCWGG 1 cut(s) 256
AjuI GAANNNNNNNTTGG 2 cut(s) 409, 441
AluBI AGCT 6 cut(s) 29, 43, 100, 123, 548, 791
AluI AGCT 6 cut(s) 29, 43, 100, 123, 548, 791
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 203
Alw44I GTGCAC 1 cut(s) 4
AlwI GGATC 1 cut(s) 735
AoxI GGCC 3 cut(s) 13, 23, 542
ApaLI GTGCAC 1 cut(s) 4
ApeKI GCWGC 1 cut(s) 516
AseI ATTAAT 1 cut(s) 347
AsiGI ACCGGT 1 cut(s) 764
Asp700I GAANNNNTTC 1 cut(s) 173
AspS9I GGNCC 2 cut(s) 68, 151
AsuHPI GGTGA 2 cut(s) 203, 524
AvaII GGWCC 2 cut(s) 68, 151
BaeGI GKGCMC 1 cut(s) 8
BbsI GAAGAC 2 cut(s) 39, 761
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 528
BccI CCATC 3 cut(s) 129, 225, 447
BciT130I CCWGG 1 cut(s) 258
BcoDI GTCTC 1 cut(s) 203
BfaI CTAG 2 cut(s) 9, 327
BfmI CTRYAG 3 cut(s) 124, 446, 598
BfuAI ACCTGC 1 cut(s) 605
BglII AGATCT 1 cut(s) 323
BisI GCNGC 1 cut(s) 517
BlsI GCNGC 1 cut(s) 518
Bme1390I CCNGG 1 cut(s) 258
Bme18I GGWCC 2 cut(s) 68, 151
BmgT120I GGNCC 2 cut(s) 68, 151
BmiI GGNNCC 3 cut(s) 153, 170, 476
BmrFI CCNGG 1 cut(s) 258
BmsI GCATC 2 cut(s) 225, 302
BpiI GAAGAC 2 cut(s) 39, 761
Bpu10I CCTNAGC 1 cut(s) 44
BsaJI CCNNGG 3 cut(s) 103, 220, 256
BsaWI WCCGGW 1 cut(s) 764
Bse118I RCCGGY 1 cut(s) 764
Bse1I ACTGG 2 cut(s) 83, 363
BseBI CCWGG 1 cut(s) 258
BseDI CCNNGG 3 cut(s) 103, 220, 256
BseGI GGATG 3 cut(s) 216, 439, 718
BseMII CTCAG 1 cut(s) 663
BseNI ACTGG 2 cut(s) 83, 363
BseRI GAGGAG 3 cut(s) 555, 731, 734
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 1 cut(s) 528
BshFI GGCC 3 cut(s) 15, 25, 544
BshTI ACCGGT 1 cut(s) 764
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 1 cut(s) 765
BslFI GGGAC 1 cut(s) 756
BsmAI GTCTC 1 cut(s) 203
BsmBI CGTCTC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 756
BsnI GGCC 3 cut(s) 15, 25, 544
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 5 cut(s) 110, 323, 450, 619, 727
Bsp19I CCATGG 1 cut(s) 220
BspACI CCGC 1 cut(s) 214
BspANI GGCC 3 cut(s) 15, 25, 544
BspCNI CTCAG 1 cut(s) 664
BspHI TCATGA 1 cut(s) 387
BspLI GGNNCC 3 cut(s) 153, 170, 476
BspMAI CTGCAG 2 cut(s) 450, 602
BspMI ACCTGC 1 cut(s) 605
BspPI GGATC 1 cut(s) 735
BspQI GCTCTTC 1 cut(s) 186
BsrFI RCCGGY 1 cut(s) 764
BsrI ACTGG 2 cut(s) 83, 363
BssAI RCCGGY 1 cut(s) 764
BssECI CCNNGG 3 cut(s) 103, 220, 256
BssMI GATC 5 cut(s) 110, 323, 450, 619, 727
BssT1I CCWWGG 2 cut(s) 103, 220
Bst2UI CCWGG 1 cut(s) 258
Bst4CI ACNGT 1 cut(s) 760
Bst6I CTCTTC 3 cut(s) 177, 186, 430
BstC8I GCNNGC 3 cut(s) 27, 307, 546
BstDEI CTNAG 4 cut(s) 44, 202, 672, 787
BstDSI CCRYGG 1 cut(s) 220
BstF5I GGATG 3 cut(s) 216, 439, 718
BstKTI GATC 5 cut(s) 113, 326, 453, 622, 730
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 5 cut(s) 110, 323, 450, 619, 727
BstMWI GCNNNNNNNGC 3 cut(s) 12, 242, 465
BstNI CCWGG 1 cut(s) 258
BstNSI RCATGY 1 cut(s) 296
BstSCI CCNGG 1 cut(s) 256
BstSFI CTRYAG 3 cut(s) 124, 446, 598
BstSLI GKGCMC 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 528
BstV2I GAAGAC 2 cut(s) 39, 761
BstX2I RGATCY 1 cut(s) 323
BstYI RGATCY 1 cut(s) 323
BsuRI GGCC 3 cut(s) 15, 25, 544
BtgI CCRYGG 1 cut(s) 220
BtsCI GGATG 3 cut(s) 216, 439, 718
BtsI GCAGTG 1 cut(s) 607
BtsIMutI CAGTG 1 cut(s) 607
BveI ACCTGC 1 cut(s) 605
Cac8I GCNNGC 3 cut(s) 27, 307, 546
CciI TCATGA 1 cut(s) 387
Cfr10I RCCGGY 1 cut(s) 764
Cfr13I GGNCC 2 cut(s) 68, 151
CseI GACGC 1 cut(s) 185
Csp6I GTAC 1 cut(s) 264
CspAI ACCGGT 1 cut(s) 764
CviAII CATG 6 cut(s) 221, 293, 301, 388, 471, 513
CviQI GTAC 1 cut(s) 264
DdeI CTNAG 4 cut(s) 44, 202, 672, 787
DpnI GATC 5 cut(s) 112, 325, 452, 621, 729
DpnII GATC 5 cut(s) 110, 323, 450, 619, 727
EaeI YGGCCR 1 cut(s) 542
Eam1104I CTCTTC 3 cut(s) 177, 186, 430
EarI CTCTTC 3 cut(s) 177, 186, 430
Eco130I CCWWGG 2 cut(s) 103, 220
Eco32I GATATC 1 cut(s) 463
Eco47I GGWCC 2 cut(s) 68, 151
Eco57I CTGAAG 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 256
EcoRV GATATC 1 cut(s) 463
EcoT14I CCWWGG 2 cut(s) 103, 220
ErhI CCWWGG 2 cut(s) 103, 220
Esp3I CGTCTC 1 cut(s) 203
FaeI CATG 6 cut(s) 224, 296, 304, 391, 474, 516
FalI AAGNNNNNCTT 2 cut(s) 343, 375
FaqI GGGAC 1 cut(s) 756
FatI CATG 6 cut(s) 220, 292, 300, 387, 470, 512
Fnu4HI GCNGC 1 cut(s) 517
FokI GGATG 3 cut(s) 203, 426, 725
Fsp4HI GCNGC 1 cut(s) 517
FspBI CTAG 2 cut(s) 9, 327
GluI GCNGC 1 cut(s) 517
HaeIII GGCC 3 cut(s) 15, 25, 544
HapII CCGG 1 cut(s) 765
HgaI GACGC 1 cut(s) 185
Hin1II CATG 6 cut(s) 224, 296, 304, 391, 474, 516
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 3 cut(s) 159, 482, 674
HpaII CCGG 1 cut(s) 765
HphI GGTGA 2 cut(s) 203, 524
Hpy166II GTNNAC 1 cut(s) 6
Hpy188III TCNNGA 4 cut(s) 114, 280, 388, 731
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 728
HpyCH4III ACNGT 1 cut(s) 760
HpyCH4IV ACGT 1 cut(s) 262
HpyCH4V TGCA 8 cut(s) 6, 245, 315, 448, 516, 600, 613, 704
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 242, 465
HpyF3I CTNAG 4 cut(s) 44, 202, 672, 787
HpySE526I ACGT 1 cut(s) 262
Hsp92II CATG 6 cut(s) 224, 296, 304, 391, 474, 516
Kzo9I GATC 5 cut(s) 110, 323, 450, 619, 727
LguI GCTCTTC 1 cut(s) 186
LmnI GCTCC 1 cut(s) 105
Lsp1109I GCAGC 1 cut(s) 528
LweI GCATC 2 cut(s) 225, 302
MaeI CTAG 2 cut(s) 9, 327
MaeII ACGT 1 cut(s) 262
MaeIII GTNAC 2 cut(s) 604, 760
MalI GATC 5 cut(s) 112, 325, 452, 621, 729
MboI GATC 5 cut(s) 110, 323, 450, 619, 727
MboII GAAGA 8 cut(s) 44, 120, 194, 200, 203, 417, 761, 801
MfeI CAATTG 2 cut(s) 454, 639
MflI RGATCY 1 cut(s) 323
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 6 cut(s) 344, 454, 490, 526, 639, 781
MlyI GAGTC 1 cut(s) 683
MmeI TCCRAC 1 cut(s) 129
MroXI GAANNNNTTC 1 cut(s) 173
MseI TTAA 3 cut(s) 333, 347, 795
MslI CAYNNNNRTG 2 cut(s) 291, 310
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 1 cut(s) 765
MspR9I CCNGG 1 cut(s) 258
MunI CAATTG 2 cut(s) 454, 639
MvaI CCWGG 1 cut(s) 258
MwoI GCNNNNNNNGC 3 cut(s) 12, 242, 465
NcoI CCATGG 1 cut(s) 220
NdeII GATC 5 cut(s) 110, 323, 450, 619, 727
NlaIII CATG 6 cut(s) 224, 296, 304, 391, 474, 516
NlaIV GGNNCC 3 cut(s) 153, 170, 476
NmuCI GTSAC 2 cut(s) 604, 760
NspI RCATGY 1 cut(s) 296
PagI TCATGA 1 cut(s) 387
PciSI GCTCTTC 1 cut(s) 186
PdmI GAANNNNTTC 1 cut(s) 173
PfeI GAWTC 2 cut(s) 159, 482
PinAI ACCGGT 1 cut(s) 764
PkrI GCNGC 1 cut(s) 518
PleI GAGTC 1 cut(s) 682
PpsI GAGTC 1 cut(s) 682
PshBI ATTAAT 1 cut(s) 347
Psp6I CCWGG 1 cut(s) 256
PspGI CCWGG 1 cut(s) 256
PspN4I GGNNCC 3 cut(s) 153, 170, 476
PspPI GGNCC 2 cut(s) 68, 151
PstI CTGCAG 2 cut(s) 450, 602
PsuI RGATCY 1 cut(s) 323
PvuII CAGCTG 1 cut(s) 29
RsaI GTAC 1 cut(s) 265
RsaNI GTAC 1 cut(s) 264
RseI CAYNNNNRTG 2 cut(s) 291, 310
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 3 cut(s) 333, 347, 795
SatI GCNGC 1 cut(s) 517
Sau3AI GATC 5 cut(s) 110, 323, 450, 619, 727
Sau96I GGNCC 2 cut(s) 68, 151
SchI GAGTC 1 cut(s) 683
ScrFI CCNGG 1 cut(s) 258
SduI GDGCHC 1 cut(s) 8
SfaNI GCATC 2 cut(s) 225, 302
SfcI CTRYAG 3 cut(s) 124, 446, 598
SinI GGWCC 2 cut(s) 68, 151
SmiMI CAYNNNNRTG 2 cut(s) 291, 310
Sse9I AATT 6 cut(s) 344, 454, 490, 526, 639, 781
SsiI CCGC 1 cut(s) 214
SspMI CTAG 2 cut(s) 9, 327
StyD4I CCNGG 1 cut(s) 256
StyI CCWWGG 2 cut(s) 103, 220
TaaI ACNGT 1 cut(s) 760
TaiI ACGT 1 cut(s) 265
TasI AATT 6 cut(s) 344, 454, 490, 526, 639, 781
TfiI GAWTC 2 cut(s) 159, 482
Tru1I TTAA 3 cut(s) 333, 347, 795
Tru9I TTAA 3 cut(s) 333, 347, 795
TscAI CASTG 1 cut(s) 607
TseFI GTSAC 2 cut(s) 604, 760
TseI GCWGC 1 cut(s) 516
Tsp45I GTSAC 2 cut(s) 604, 760
TspDTI ATGAA 4 cut(s) 376, 426, 474, 801
TspRI CASTG 1 cut(s) 607
VneI GTGCAC 1 cut(s) 4
VpaK11BI GGWCC 2 cut(s) 68, 151
VspI ATTAAT 1 cut(s) 347
XceI RCATGY 1 cut(s) 296
XmnI GAANNNNTTC 1 cut(s) 173
XspI CTAG 2 cut(s) 9, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.