AT1G19130

function DUF985 (InterPro IPR009327), RmlC-like jelly roll fold (InterPro IPR014710)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013260
Physical Location & Seq
Reverse (-)
6609325 .. 6610613
1289 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G19130.1

Sequence Viewer

Length: 579 bp
ATGTCGTCAAAGATGGTGAAGTCTTCAGAAATCGTCGGAAAACTTAATCTCAGGGCACACCAAGAAGGAGGCTTTTTCGCTGAAACTTTCAGAGATTCTTCTGTTTTCCTCTCCACCTCTCAGCTCCCTCCAACCTTTAAGGTGGACAGAGCTGTGAGCACAAGTATCTACTTCTTGCTTCCATCTGGGAGCGTTTCTCGTCTTCATCGCATACCAATGGCTGAAACCTGGCACTTTTATTTGGGTGAACCCCTTACTGTAGTGGAACTCTACGATGATGGGAAGTTGAAATTCACATGTCTTGGTCCTGACTTGTTTGAAGGTGATCAGAAGCCTCAGTACACGGTCCCTCCAAACGTCTGGTTTGGTTCGTTTCCTACAAAGGATGTTCATTTTTCTCAAGACGGGGCTCTGCTTAAAGCTGAGGCTAGAGACTCTGAGAACCATTTCTCTCTTGTTGGCTGCACCTGCGCTCCTGCTTTCCAGTTCGAGGACTTTGAGCTCGCGAAACGCTCTGATCTCTTATCAAGGTTTCCGCAACACGAGTCACTCATCACAATGCTATCTTACCCGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_5

Protein Analysis

192

Amino Acids

21.64

Weight (kDa)

5.51

Isoelectric Point (pI)

45.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_5 PF06172 10 - 169 8.4e-43 Cupin superfamily (DUF985)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013260)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19130
fragaria_vesca FvH4_1g09020
malus_domestica MD02G1095400.v1.1
prunus_persica Prupe.7G195700_v2.0.a1
pyrus_communis pycom02g07550
rosa_chinensis RchiOBHm_Chr2g0095441
rosa_laevigata RLG00000016566
rosa_multiflora Rmu_co8132630.1_g000001 Rmu_co8397589.1_g000001 Rmu_sc0010847.1_g000003 Rmu_ssc0000183.1_g000046
rosa_roxburghii Rroxscaffold_2G00146370
rosa_rugosa Rorug02G0051100
rosa_samantha Rh2AG099100 Rh2BG100300 Rh2CG102500 Rh2DG100000
rosa_wichuraiana Rw2G007500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 476
Acc36I ACCTGC 1 cut(s) 476
AccII CGCG 1 cut(s) 506
AciI CCGC 1 cut(s) 536
AcsI RAATTY 1 cut(s) 290
AcuI CTGAAG 1 cut(s) 9
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 1 cut(s) 490
AflIII ACRYGT 1 cut(s) 296
AgsI TTSAA 2 cut(s) 289, 320
AjnI CCWGG 1 cut(s) 227
AluBI AGCT 4 cut(s) 124, 152, 422, 502
AluI AGCT 4 cut(s) 124, 152, 422, 502
Alw21I GWGCWC 2 cut(s) 161, 504
Alw26I GTCTC 1 cut(s) 426
ApeKI GCWGC 1 cut(s) 462
ApoI RAATTY 1 cut(s) 290
Asp700I GAANNNNTTC 1 cut(s) 446
AspLEI GCGC 1 cut(s) 473
AspS9I GGNCC 2 cut(s) 305, 346
AsuC2I CCSGG 1 cut(s) 572
AsuHPI GGTGA 3 cut(s) 28, 257, 335
AvaII GGWCC 2 cut(s) 305, 346
BaeGI GKGCMC 1 cut(s) 58
BanII GRGCYC 2 cut(s) 412, 504
BarI GAAGNNNNNNTAC 2 cut(s) 323, 355
BauI CACGAG 1 cut(s) 542
BbsI GAAGAC 2 cut(s) 15, 194
Bbv12I GWGCWC 2 cut(s) 161, 504
BbvCI CCTCAGC 1 cut(s) 423
BbvI GCAGC 1 cut(s) 449
BccI CCATC 3 cut(s) 7, 190, 272
BciT130I CCWGG 1 cut(s) 229
BclI TGATCA 1 cut(s) 325
BcnI CCSGG 1 cut(s) 572
BcoDI GTCTC 1 cut(s) 426
BfaI CTAG 1 cut(s) 429
BfmI CTRYAG 1 cut(s) 258
BfuAI ACCTGC 1 cut(s) 476
BisI GCNGC 1 cut(s) 463
BlsI GCNGC 1 cut(s) 464
Bme1390I CCNGG 2 cut(s) 229, 572
Bme18I GGWCC 2 cut(s) 305, 346
BmgT120I GGNCC 2 cut(s) 305, 346
BmiI GGNNCC 1 cut(s) 348
BmrFI CCNGG 2 cut(s) 229, 572
BpiI GAAGAC 2 cut(s) 15, 194
BplI GAGNNNNNCTC 2 cut(s) 181, 213
Bpu10I CCTNAGC 1 cut(s) 423
BpuEI CTTGAG 1 cut(s) 384
BpuMI CCSGG 1 cut(s) 572
BsaXI ACNNNNNCTCC 4 cut(s) 334, 364, 457, 487
Bsc4I CCNNNNNNNGG 1 cut(s) 490
Bse1I ACTGG 1 cut(s) 484
BseBI CCWGG 1 cut(s) 229
BseGI GGATG 1 cut(s) 391
BseLI CCNNNNNNNGG 1 cut(s) 490
BseMII CTCAG 5 cut(s) 64, 134, 350, 414, 429
BseNI ACTGG 1 cut(s) 484
BseSI GKGCMC 1 cut(s) 58
BseXI GCAGC 1 cut(s) 449
BsgI GTGCAG 1 cut(s) 448
Bsh1236I CGCG 1 cut(s) 506
BsiHKAI GWGCWC 2 cut(s) 161, 504
BsiSI CCGG 1 cut(s) 572
BslFI GGGAC 1 cut(s) 332
BslI CCNNNNNNNGG 1 cut(s) 490
BsmAI GTCTC 1 cut(s) 426
BsmFI GGGAC 1 cut(s) 332
Bsp1286I GDGCHC 4 cut(s) 58, 161, 412, 504
Bsp143I GATC 2 cut(s) 325, 517
Bsp68I TCGCGA 1 cut(s) 506
BspACI CCGC 1 cut(s) 536
BspCNI CTCAG 5 cut(s) 63, 133, 349, 415, 430
BspFNI CGCG 1 cut(s) 506
BspLI GGNNCC 1 cut(s) 348
BspMI ACCTGC 1 cut(s) 476
BsrI ACTGG 1 cut(s) 484
BssMI GATC 2 cut(s) 325, 517
BssSI CACGAG 1 cut(s) 542
Bst2BI CACGAG 1 cut(s) 542
Bst2UI CCWGG 1 cut(s) 229
Bst4CI ACNGT 2 cut(s) 259, 346
BstC8I GCNNGC 1 cut(s) 504
BstDEI CTNAG 5 cut(s) 50, 120, 336, 423, 438
BstF5I GGATG 1 cut(s) 391
BstFNI CGCG 1 cut(s) 506
BstHHI GCGC 1 cut(s) 473
BstKTI GATC 2 cut(s) 328, 520
BstMAI GTCTC 1 cut(s) 426
BstMBI GATC 2 cut(s) 325, 517
BstMWI GCNNNNNNNGC 1 cut(s) 468
BstNI CCWGG 1 cut(s) 229
BstNSI RCATGY 1 cut(s) 300
BstSCI CCNGG 2 cut(s) 227, 570
BstSFI CTRYAG 1 cut(s) 258
BstSLI GKGCMC 1 cut(s) 58
BstUI CGCG 1 cut(s) 506
BstV1I GCAGC 1 cut(s) 449
BstV2I GAAGAC 2 cut(s) 15, 194
BstXI CCANNNNNNTGG 1 cut(s) 360
BtgZI GCGATG 1 cut(s) 191
BtsCI GGATG 1 cut(s) 391
BtuMI TCGCGA 1 cut(s) 506
BveI ACCTGC 1 cut(s) 476
Cac8I GCNNGC 1 cut(s) 504
CfoI GCGC 1 cut(s) 473
Cfr13I GGNCC 2 cut(s) 305, 346
Csp6I GTAC 1 cut(s) 340
CviAII CATG 1 cut(s) 297
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 5 cut(s) 50, 120, 336, 423, 438
DpnI GATC 2 cut(s) 327, 519
DpnII GATC 2 cut(s) 325, 517
Ecl136II GAGCTC 1 cut(s) 502
Eco24I GRGCYC 2 cut(s) 412, 504
Eco47I GGWCC 2 cut(s) 305, 346
Eco53kI GAGCTC 1 cut(s) 502
Eco57I CTGAAG 1 cut(s) 9
EcoICRI GAGCTC 1 cut(s) 502
EcoRII CCWGG 1 cut(s) 227
EcoT38I GRGCYC 2 cut(s) 412, 504
FaeI CATG 1 cut(s) 300
FaiI YATR 2 cut(s) 212, 298
FaqI GGGAC 1 cut(s) 332
FatI CATG 1 cut(s) 296
FbaI TGATCA 1 cut(s) 325
Fnu4HI GCNGC 1 cut(s) 463
FokI GGATG 1 cut(s) 398
FriOI GRGCYC 2 cut(s) 412, 504
Fsp4HI GCNGC 1 cut(s) 463
FspBI CTAG 1 cut(s) 429
GlaI GCGC 1 cut(s) 472
GluI GCNGC 1 cut(s) 463
HapII CCGG 1 cut(s) 572
HhaI GCGC 1 cut(s) 473
Hin1II CATG 1 cut(s) 300
Hin6I GCGC 1 cut(s) 471
HinP1I GCGC 1 cut(s) 471
HinfI GANTC 3 cut(s) 95, 434, 545
HpaII CCGG 1 cut(s) 572
HphI GGTGA 3 cut(s) 28, 257, 335
Hpy166II GTNNAC 3 cut(s) 145, 248, 342
Hpy188I TCNGA 6 cut(s) 28, 38, 92, 330, 439, 517
Hpy188III TCNNGA 3 cut(s) 308, 401, 505
Hpy8I GTNNAC 3 cut(s) 145, 248, 342
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 2 cut(s) 59, 314
HpyCH4III ACNGT 2 cut(s) 259, 346
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 1 cut(s) 465
HpyF10VI GCNNNNNNNGC 1 cut(s) 468
HpyF3I CTNAG 5 cut(s) 50, 120, 336, 423, 438
HpySE526I ACGT 1 cut(s) 357
Hsp92II CATG 1 cut(s) 300
HspAI GCGC 1 cut(s) 471
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 2 cut(s) 325, 517
LmnI GCTCC 3 cut(s) 129, 189, 478
LpnPI CCDG 9 cut(s) 37, 171, 214, 241, 321, 346, 481, 489, 497
Lsp1109I GCAGC 1 cut(s) 449
MaeI CTAG 1 cut(s) 429
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 1 cut(s) 546
MalI GATC 2 cut(s) 327, 519
MboI GATC 2 cut(s) 325, 517
MboII GAAGA 3 cut(s) 15, 90, 194
MhlI GDGCHC 4 cut(s) 58, 161, 412, 504
MluCI AATT 1 cut(s) 290
MlyI GAGTC 2 cut(s) 428, 554
MmeI TCCRAC 2 cut(s) 16, 155
MnlI CCTC 8 cut(s) 62, 119, 127, 138, 345, 360, 418, 484
MroXI GAANNNNTTC 1 cut(s) 446
MseI TTAA 3 cut(s) 45, 138, 417
MslI CAYNNNNRTG 2 cut(s) 215, 557
MspI CCGG 1 cut(s) 572
MspR9I CCNGG 2 cut(s) 229, 572
MvaI CCWGG 1 cut(s) 229
MvnI CGCG 1 cut(s) 506
MwoI GCNNNNNNNGC 1 cut(s) 468
NciI CCSGG 1 cut(s) 572
NdeII GATC 2 cut(s) 325, 517
NlaIII CATG 1 cut(s) 300
NlaIV GGNNCC 1 cut(s) 348
NmuCI GTSAC 1 cut(s) 546
NruI TCGCGA 1 cut(s) 506
NspI RCATGY 1 cut(s) 300
PaqCI CACCTGC 1 cut(s) 476
PciI ACATGT 1 cut(s) 296
PdmI GAANNNNTTC 1 cut(s) 446
PfeI GAWTC 1 cut(s) 95
PkrI GCNGC 1 cut(s) 464
PleI GAGTC 2 cut(s) 428, 553
PpsI GAGTC 2 cut(s) 428, 553
PscI ACATGT 1 cut(s) 296
Psp124BI GAGCTC 1 cut(s) 504
Psp6I CCWGG 1 cut(s) 227
PspGI CCWGG 1 cut(s) 227
PspN4I GGNNCC 1 cut(s) 348
PspPI GGNCC 2 cut(s) 305, 346
RruI TCGCGA 1 cut(s) 506
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
RseI CAYNNNNRTG 2 cut(s) 215, 557
SacI GAGCTC 1 cut(s) 504
SaqAI TTAA 3 cut(s) 45, 138, 417
SatI GCNGC 1 cut(s) 463
Sau3AI GATC 2 cut(s) 325, 517
Sau96I GGNCC 2 cut(s) 305, 346
SchI GAGTC 2 cut(s) 428, 554
ScrFI CCNGG 2 cut(s) 229, 572
SduI GDGCHC 4 cut(s) 58, 161, 412, 504
SfcI CTRYAG 1 cut(s) 258
SinI GGWCC 2 cut(s) 305, 346
SmiMI CAYNNNNRTG 2 cut(s) 215, 557
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
Sse9I AATT 1 cut(s) 290
SsiI CCGC 1 cut(s) 536
SspMI CTAG 1 cut(s) 429
SstI GAGCTC 1 cut(s) 504
StyD4I CCNGG 2 cut(s) 227, 570
TaaI ACNGT 2 cut(s) 259, 346
TaiI ACGT 1 cut(s) 360
TaqI TCGA 1 cut(s) 489
TasI AATT 1 cut(s) 290
TatI WGTACW 1 cut(s) 339
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 3 cut(s) 45, 138, 417
Tru9I TTAA 3 cut(s) 45, 138, 417
TseFI GTSAC 1 cut(s) 546
TseI GCWGC 1 cut(s) 462
Tsp45I GTSAC 1 cut(s) 546
TspDTI ATGAA 2 cut(s) 194, 380
VpaK11BI GGWCC 2 cut(s) 305, 346
XapI RAATTY 1 cut(s) 290
XceI RCATGY 1 cut(s) 300
XmnI GAANNNNTTC 1 cut(s) 446
XspI CTAG 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.