Rh2CG102500
ERF Family

Cupin superfamily (DUF985)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0013260
Physical Location & Seq
Reverse (-)
8836925 .. 8841541
4617 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG102500.1

Sequence Viewer

Length: 582 bp
ATGGCCACTGCCACTGCCACCCAGATTGTTGAGAAACTGAAACTGAATCCACACCCGGAAGGTGGTTTCTTCTCTGAAACTTTCAGAGACACTTCCATTCTCCTCCCCTTGTGTCAGCTCCCACCAGACTACAAGGTTGATCGCCCTGTGAGTACGGCTATTTACTTCTTGCTGCCAACTGGGGATGTTTCGCGCCTTCATCGGATACCGTGTGCAGAAACATGGCATTTCTACCTGGGAGAACCTCTTACGGTAATGGAGTTGAATGAGGAAGATGGGAAAGTCAAACTAACAAACATTGGAGCAAATTTCATTGGAGAGGATCAGGTACCCCAGTACACAGTGCCTCCAAATGTTTGGTTTGGTGCATTTCCTACAAAGGACTTCAACATTTCACCAGATGGGGGTGTGACCAAAGCTGCTCCAAGGGATTCTGAGACCCACTACTCTCTCGTGGGATGCACTTGTGCACCAGCCTTTCAGTTCCAGGATTTTGAGTTGGCAAAACGCTCAGAGCTCATTAAGCACTTCCCTGATAGCGAGCCTCTTATAACATTGCTAACAGATCCTGAAAAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_5

Protein Analysis

193

Amino Acids

21.5

Weight (kDa)

4.88

Isoelectric Point (pI)

43.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_5 PF06172 8 - 168 4.2e-42 Cupin superfamily (DUF985)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013260)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19130
fragaria_vesca FvH4_1g09020
malus_domestica MD02G1095400.v1.1
prunus_persica Prupe.7G195700_v2.0.a1
pyrus_communis pycom02g07550
rosa_chinensis RchiOBHm_Chr2g0095441
rosa_laevigata RLG00000016566
rosa_multiflora Rmu_co8132630.1_g000001 Rmu_co8397589.1_g000001 Rmu_sc0010847.1_g000003 Rmu_ssc0000183.1_g000046
rosa_roxburghii Rroxscaffold_2G00146370
rosa_rugosa Rorug02G0051100
rosa_samantha Rh2AG099100 Rh2BG100300 Rh2CG102500 Rh2DG100000
rosa_wichuraiana Rw2G007500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 551
Acc65I GGTACC 1 cut(s) 328
AccB1I GGYRCC 1 cut(s) 328
AccII CGCG 1 cut(s) 193
AclWI GGATC 2 cut(s) 330, 560
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 307
AfaI GTAC 3 cut(s) 154, 330, 338
AfiI CCNNNNNNNGG 2 cut(s) 62, 404
AgsI TTSAA 2 cut(s) 265, 388
AjnI CCWGG 2 cut(s) 234, 486
AluBI AGCT 3 cut(s) 118, 419, 517
AluI AGCT 3 cut(s) 118, 419, 517
Alw21I GWGCWC 2 cut(s) 472, 519
Alw26I GTCTC 2 cut(s) 81, 431
Alw44I GTGCAC 1 cut(s) 468
AlwI GGATC 2 cut(s) 330, 560
AlwNI CAGNNNCTG 1 cut(s) 569
AoxI GGCC 1 cut(s) 3
ApaLI GTGCAC 1 cut(s) 468
ApeKI GCWGC 2 cut(s) 172, 419
ApoI RAATTY 1 cut(s) 307
Asp718I GGTACC 1 cut(s) 328
AspLEI GCGC 1 cut(s) 195
AsuC2I CCSGG 1 cut(s) 56
AsuHPI GGTGA 1 cut(s) 387
BaeGI GKGCMC 1 cut(s) 472
BaeI ACNNNNGTAYC 2 cut(s) 320, 353
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 328
BanII GRGCYC 1 cut(s) 519
BauI CACGAG 1 cut(s) 452
Bbv12I GWGCWC 2 cut(s) 472, 519
BbvI GCAGC 2 cut(s) 159, 406
BccI CCATC 2 cut(s) 269, 395
BceAI ACGGC 1 cut(s) 171
BciT130I CCWGG 2 cut(s) 236, 488
BciVI GTATCC 1 cut(s) 198
BcnI CCSGG 1 cut(s) 56
BcoDI GTCTC 2 cut(s) 81, 431
BfuI GTATCC 1 cut(s) 198
BisI GCNGC 2 cut(s) 173, 420
BlsI GCNGC 2 cut(s) 174, 421
Bme1390I CCNGG 3 cut(s) 56, 236, 488
BmiI GGNNCC 1 cut(s) 330
BmrFI CCNGG 3 cut(s) 56, 236, 488
BmrI ACTGGG 2 cut(s) 189, 328
BmsI GCATC 1 cut(s) 449
BmuI ACTGGG 2 cut(s) 189, 328
BpuMI CCSGG 1 cut(s) 56
BsaI GGTCTC 1 cut(s) 431
BsaJI CCNNGG 2 cut(s) 235, 425
BsaXI ACNNNNNCTCC 2 cut(s) 331, 361
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 404
Bse1I ACTGG 2 cut(s) 184, 334
Bse3DI GCAATG 1 cut(s) 554
BseBI CCWGG 2 cut(s) 236, 488
BseDI CCNNGG 2 cut(s) 235, 425
BseGI GGATG 2 cut(s) 190, 464
BseLI CCNNNNNNNGG 2 cut(s) 62, 404
BseMI GCAATG 1 cut(s) 554
BseMII CTCAG 2 cut(s) 426, 525
BseNI ACTGG 2 cut(s) 184, 334
BseRI GAGGAG 1 cut(s) 92
BseSI GKGCMC 1 cut(s) 472
BseXI GCAGC 2 cut(s) 159, 406
BsgI GTGCAG 1 cut(s) 234
Bsh1236I CGCG 1 cut(s) 193
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 328
BsiHKAI GWGCWC 2 cut(s) 472, 519
BsiSI CCGG 1 cut(s) 56
BslI CCNNNNNNNGG 2 cut(s) 62, 404
BsmAI GTCTC 2 cut(s) 81, 431
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 431
Bsp1286I GDGCHC 2 cut(s) 472, 519
Bsp143I GATC 3 cut(s) 139, 322, 565
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 427, 524
BspFNI CGCG 1 cut(s) 193
BspLI GGNNCC 1 cut(s) 330
BspPI GGATC 2 cut(s) 330, 560
BspT107I GGYRCC 1 cut(s) 328
BspTNI GGTCTC 1 cut(s) 431
BsrDI GCAATG 1 cut(s) 554
BsrI ACTGG 2 cut(s) 184, 334
BssECI CCNNGG 2 cut(s) 235, 425
BssMI GATC 3 cut(s) 139, 322, 565
BssSI CACGAG 1 cut(s) 452
BssT1I CCWWGG 1 cut(s) 425
Bst2BI CACGAG 1 cut(s) 452
Bst2UI CCWGG 2 cut(s) 236, 488
Bst4CI ACNGT 3 cut(s) 210, 253, 343
BstC8I GCNNGC 1 cut(s) 542
BstDEI CTNAG 2 cut(s) 435, 511
BstF5I GGATG 2 cut(s) 190, 464
BstFNI CGCG 1 cut(s) 193
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 3 cut(s) 142, 325, 568
BstMAI GTCTC 2 cut(s) 81, 431
BstMBI GATC 3 cut(s) 139, 322, 565
BstMWI GCNNNNNNNGC 1 cut(s) 523
BstNI CCWGG 2 cut(s) 236, 488
BstSCI CCNGG 3 cut(s) 54, 234, 486
BstSLI GKGCMC 1 cut(s) 472
BstUI CGCG 1 cut(s) 193
BstV1I GCAGC 2 cut(s) 159, 406
BstX2I RGATCY 1 cut(s) 565
BstXI CCANNNNNNTGG 1 cut(s) 357
BstYI RGATCY 1 cut(s) 565
BsuI GTATCC 1 cut(s) 198
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 190, 464
BtsI GCAGTG 2 cut(s) 6, 12
BtsIMutI CAGTG 3 cut(s) 6, 12, 348
Cac8I GCNNGC 1 cut(s) 542
CaiI CAGNNNCTG 1 cut(s) 569
CfoI GCGC 1 cut(s) 195
Csp6I GTAC 3 cut(s) 153, 329, 337
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 1 cut(s) 222
CviJI RGCY 7 cut(s) 5, 118, 158, 419, 476, 517, 544
CviKI_1 RGCY 7 cut(s) 5, 118, 158, 419, 476, 517, 544
CviQI GTAC 3 cut(s) 153, 329, 337
DdeI CTNAG 2 cut(s) 435, 511
DpnI GATC 3 cut(s) 141, 324, 567
DpnII GATC 3 cut(s) 139, 322, 565
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 517
Eco130I CCWWGG 1 cut(s) 425
Eco24I GRGCYC 1 cut(s) 519
Eco31I GGTCTC 1 cut(s) 431
Eco53kI GAGCTC 1 cut(s) 517
EcoICRI GAGCTC 1 cut(s) 517
EcoRII CCWGG 2 cut(s) 234, 486
EcoT14I CCWWGG 1 cut(s) 425
EcoT38I GRGCYC 1 cut(s) 519
ErhI CCWWGG 1 cut(s) 425
FaeI CATG 1 cut(s) 225
FaiI YATR 3 cut(s) 223, 551, 580
FatI CATG 1 cut(s) 221
Fnu4HI GCNGC 2 cut(s) 173, 420
FokI GGATG 2 cut(s) 197, 471
FriOI GRGCYC 1 cut(s) 519
Fsp4HI GCNGC 2 cut(s) 173, 420
GlaI GCGC 1 cut(s) 194
GluI GCNGC 2 cut(s) 173, 420
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 56
HhaI GCGC 1 cut(s) 195
Hin1II CATG 1 cut(s) 225
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HinfI GANTC 2 cut(s) 46, 431
HpaII CCGG 1 cut(s) 56
HphI GGTGA 1 cut(s) 387
Hpy166II GTNNAC 2 cut(s) 339, 470
Hpy188I TCNGA 5 cut(s) 76, 86, 204, 436, 514
Hpy188III TCNNGA 1 cut(s) 569
Hpy8I GTNNAC 2 cut(s) 339, 470
HpyAV CCTTC 2 cut(s) 53, 206
HpyCH4III ACNGT 3 cut(s) 210, 253, 343
HpyCH4V TGCA 4 cut(s) 215, 368, 462, 470
HpyF10VI GCNNNNNNNGC 1 cut(s) 523
HpyF3I CTNAG 2 cut(s) 435, 511
Hsp92II CATG 1 cut(s) 225
HspAI GCGC 1 cut(s) 193
KpnI GGTACC 1 cut(s) 332
Kzo9I GATC 3 cut(s) 139, 322, 565
LmnI GCTCC 3 cut(s) 123, 302, 427
Lsp1109I GCAGC 2 cut(s) 159, 406
LweI GCATC 1 cut(s) 449
MaeIII GTNAC 1 cut(s) 409
MalI GATC 3 cut(s) 141, 324, 567
MboI GATC 3 cut(s) 139, 322, 565
MboII GAAGA 2 cut(s) 61, 284
MflI RGATCY 1 cut(s) 565
MhlI GDGCHC 2 cut(s) 472, 519
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 307
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 6 cut(s) 113, 255, 262, 313, 357, 555
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 522
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 3 cut(s) 56, 236, 488
MvaI CCWGG 2 cut(s) 236, 488
MvnI CGCG 1 cut(s) 193
MwoI GCNNNNNNNGC 1 cut(s) 523
NciI CCSGG 1 cut(s) 56
NdeII GATC 3 cut(s) 139, 322, 565
NlaIII CATG 1 cut(s) 225
NlaIV GGNNCC 1 cut(s) 330
NmuCI GTSAC 1 cut(s) 409
PfeI GAWTC 2 cut(s) 46, 431
PfoI TCCNGGA 1 cut(s) 486
PkrI GCNGC 2 cut(s) 174, 421
PsiI TTATAA 1 cut(s) 551
Psp124BI GAGCTC 1 cut(s) 519
Psp6I CCWGG 2 cut(s) 234, 486
PspGI CCWGG 2 cut(s) 234, 486
PspN4I GGNNCC 1 cut(s) 330
PstNI CAGNNNCTG 1 cut(s) 569
PsuI RGATCY 1 cut(s) 565
RsaI GTAC 3 cut(s) 154, 330, 338
RsaNI GTAC 3 cut(s) 153, 329, 337
SacI GAGCTC 1 cut(s) 519
SaqAI TTAA 1 cut(s) 522
SatI GCNGC 2 cut(s) 173, 420
Sau3AI GATC 3 cut(s) 139, 322, 565
ScrFI CCNGG 3 cut(s) 56, 236, 488
SduI GDGCHC 2 cut(s) 472, 519
SetI ASST 8 cut(s) 64, 120, 138, 237, 247, 330, 421, 519
SfaNI GCATC 1 cut(s) 449
Sse9I AATT 1 cut(s) 307
SstI GAGCTC 1 cut(s) 519
StyD4I CCNGG 3 cut(s) 54, 234, 486
StyI CCWWGG 1 cut(s) 425
TaaI ACNGT 3 cut(s) 210, 253, 343
TasI AATT 1 cut(s) 307
TatI WGTACW 1 cut(s) 336
TfiI GAWTC 2 cut(s) 46, 431
Tru1I TTAA 1 cut(s) 522
Tru9I TTAA 1 cut(s) 522
TscAI CASTG 3 cut(s) 13, 19, 348
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 2 cut(s) 172, 419
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 2 cut(s) 188, 301
TspRI CASTG 3 cut(s) 13, 19, 348
VneI GTGCAC 1 cut(s) 468
XapI RAATTY 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.