Rmu_sc0010847.1_g000003
ERF Family

Cupin superfamily (DUF985)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010847.1
OG0013260
Physical Location & Seq
Forward (+)
6775 .. 11741
4967 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010847.1_g000003.1.cds

Sequence Viewer

Length: 876 bp
atgacgatggagatagtgacgtacaatgtcaacggtcacgtcgatcacgacaagaccaccctccagcaagtccatcctggcctccacgacatccggcaacatctggagggtcgttctaattgcaatggggttgctgtcaagttgttatgggatgagatgaccttctccgtcgagggacaatgggacagtggttggggtcgagcgagacatgcgtggccagagaaggaaagcttaaacgttttcacctgccaaatagacaaagagatcgtccgaacaagaccagcagcagatcacagagacatggccactgccacccagattgttgagaaactgaaactgaatccacacccggaaggtggtttcttctctgaaactttcagagacacttccattctcctccccttgtgtcagctcccaccagactacaaggttgatcgccctgtgagtacagctatttacttcttgctgccaactggggatgtttcgcgccttcatcggataccgtgtgcagaaacatggcatttctacctgggagaacctcttacggtaatggagttgaatgaggaagatgggaaagtcaaactaacaaacattggagcaaatttcattggagaggatcaggtaccccagtacacagtgcctccaaatgtttggtttggtgcatttcctacaaaggacttcaacatttcaccagatgggggggtgaccaaagctgctccaagggattctgagacccactactctctcgtgggatgcacttgtgcaccagcctttcagttccaggatttcgagttggcaaaacgctcagagctcattaagcacttccctgatagggagcctcttataacattgctaacagatcctgaaaaagcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_5

Protein Analysis

291

Amino Acids

32.93

Weight (kDa)

5.35

Isoelectric Point (pI)

36.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013260)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19130
fragaria_vesca FvH4_1g09020
malus_domestica MD02G1095400.v1.1
prunus_persica Prupe.7G195700_v2.0.a1
pyrus_communis pycom02g07550
rosa_chinensis RchiOBHm_Chr2g0095441
rosa_laevigata RLG00000016566
rosa_multiflora Rmu_co8132630.1_g000001 Rmu_co8397589.1_g000001 Rmu_sc0010847.1_g000003 Rmu_ssc0000183.1_g000046
rosa_roxburghii Rroxscaffold_2G00146370
rosa_rugosa Rorug02G0051100
rosa_samantha Rh2AG099100 Rh2BG100300 Rh2CG102500 Rh2DG100000
rosa_wichuraiana Rw2G007500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 845
AarI CACCTGC 1 cut(s) 254
Acc36I ACCTGC 1 cut(s) 254
Acc65I GGTACC 1 cut(s) 622
AccB1I GGYRCC 1 cut(s) 622
AccII CGCG 1 cut(s) 487
AclI AACGTT 1 cut(s) 237
AclWI GGATC 2 cut(s) 624, 854
AcoI YGGCCR 2 cut(s) 215, 303
AcsI RAATTY 1 cut(s) 601
AfaI GTAC 4 cut(s) 23, 448, 624, 632
AfiI CCNNNNNNNGG 3 cut(s) 356, 698, 832
AgsI TTSAA 2 cut(s) 559, 682
AjiI CACGTC 1 cut(s) 40
AjnI CCWGG 3 cut(s) 76, 528, 780
AluBI AGCT 5 cut(s) 231, 412, 452, 713, 811
AluI AGCT 5 cut(s) 231, 412, 452, 713, 811
Alw21I GWGCWC 2 cut(s) 766, 813
Alw26I GTCTC 4 cut(s) 199, 291, 375, 725
Alw44I GTGCAC 1 cut(s) 762
AlwI GGATC 2 cut(s) 624, 854
AlwNI CAGNNNCTG 1 cut(s) 863
AoxI GGCC 3 cut(s) 79, 215, 303
ApaLI GTGCAC 1 cut(s) 762
ApeKI GCWGC 3 cut(s) 284, 466, 713
ApoI RAATTY 1 cut(s) 601
ArsI GACNNNNNNTTYG 2 cut(s) 252, 284
Asp718I GGTACC 1 cut(s) 622
AspLEI GCGC 1 cut(s) 489
AsuC2I CCSGG 1 cut(s) 350
AsuHPI GGTGA 3 cut(s) 235, 681, 715
BaeGI GKGCMC 1 cut(s) 766
BaeI ACNNNNGTAYC 2 cut(s) 614, 647
BalI TGGCCA 2 cut(s) 217, 305
BanI GGYRCC 1 cut(s) 622
BanII GRGCYC 1 cut(s) 813
BauI CACGAG 1 cut(s) 746
Bbv12I GWGCWC 2 cut(s) 766, 813
BbvI GCAGC 3 cut(s) 296, 453, 700
BccI CCATC 3 cut(s) 81, 563, 689
BciT130I CCWGG 3 cut(s) 78, 530, 782
BciVI GTATCC 1 cut(s) 492
BcnI CCSGG 1 cut(s) 350
BcoDI GTCTC 4 cut(s) 199, 291, 375, 725
BfuAI ACCTGC 1 cut(s) 254
BfuI GTATCC 1 cut(s) 492
BisI GCNGC 3 cut(s) 285, 467, 714
BlsI GCNGC 3 cut(s) 286, 468, 715
Bme1390I CCNGG 4 cut(s) 78, 350, 530, 782
BmgBI CACGTC 1 cut(s) 40
BmiI GGNNCC 2 cut(s) 624, 837
BmrFI CCNGG 4 cut(s) 78, 350, 530, 782
BmrI ACTGGG 2 cut(s) 483, 622
BmsI GCATC 1 cut(s) 743
BmuI ACTGGG 2 cut(s) 483, 622
BpmI CTGGAG 2 cut(s) 47, 125
BpuMI CCSGG 1 cut(s) 350
BsaI GGTCTC 1 cut(s) 725
BsaJI CCNNGG 2 cut(s) 529, 719
BsaXI ACNNNNNCTCC 2 cut(s) 625, 655
Bsc4I CCNNNNNNNGG 3 cut(s) 356, 698, 832
Bse1I ACTGG 2 cut(s) 478, 628
Bse3DI GCAATG 2 cut(s) 130, 848
BseBI CCWGG 3 cut(s) 78, 530, 782
BseDI CCNNGG 2 cut(s) 529, 719
BseGI GGATG 5 cut(s) 73, 90, 157, 484, 758
BseLI CCNNNNNNNGG 3 cut(s) 356, 698, 832
BseMI GCAATG 2 cut(s) 130, 848
BseMII CTCAG 2 cut(s) 720, 819
BseNI ACTGG 2 cut(s) 478, 628
BseRI GAGGAG 1 cut(s) 386
BseSI GKGCMC 1 cut(s) 766
BseXI GCAGC 3 cut(s) 296, 453, 700
BsgI GTGCAG 1 cut(s) 528
Bsh1236I CGCG 1 cut(s) 487
BshFI GGCC 3 cut(s) 81, 217, 305
BshNI GGYRCC 1 cut(s) 622
BsiHKAI GWGCWC 2 cut(s) 766, 813
BsiSI CCGG 2 cut(s) 94, 350
BslFI GGGAC 2 cut(s) 189, 197
BslI CCNNNNNNNGG 3 cut(s) 356, 698, 832
BsmAI GTCTC 4 cut(s) 199, 291, 375, 725
BsmFI GGGAC 2 cut(s) 189, 197
BsnI GGCC 3 cut(s) 81, 217, 305
Bso31I GGTCTC 1 cut(s) 725
Bsp1286I GDGCHC 2 cut(s) 766, 813
Bsp143I GATC 6 cut(s) 43, 264, 289, 433, 616, 859
BspANI GGCC 3 cut(s) 81, 217, 305
BspCNI CTCAG 2 cut(s) 721, 818
BspFNI CGCG 1 cut(s) 487
BspLI GGNNCC 2 cut(s) 624, 837
BspMI ACCTGC 1 cut(s) 254
BspPI GGATC 2 cut(s) 624, 854
BspT107I GGYRCC 1 cut(s) 622
BspTNI GGTCTC 1 cut(s) 725
BsrDI GCAATG 2 cut(s) 130, 848
BsrI ACTGG 2 cut(s) 478, 628
BssECI CCNNGG 2 cut(s) 529, 719
BssMI GATC 6 cut(s) 43, 264, 289, 433, 616, 859
BssSI CACGAG 1 cut(s) 746
BssT1I CCWWGG 1 cut(s) 719
Bst2BI CACGAG 1 cut(s) 746
Bst2UI CCWGG 3 cut(s) 78, 530, 782
Bst4CI ACNGT 5 cut(s) 35, 188, 504, 547, 637
BstDEI CTNAG 2 cut(s) 729, 805
BstEII GGTNACC 1 cut(s) 703
BstF5I GGATG 5 cut(s) 73, 90, 157, 484, 758
BstFNI CGCG 1 cut(s) 487
BstHHI GCGC 1 cut(s) 489
BstKTI GATC 6 cut(s) 46, 267, 292, 436, 619, 862
BstMAI GTCTC 4 cut(s) 199, 291, 375, 725
BstMBI GATC 6 cut(s) 43, 264, 289, 433, 616, 859
BstMWI GCNNNNNNNGC 2 cut(s) 209, 817
BstNI CCWGG 3 cut(s) 78, 530, 782
BstNSI RCATGY 1 cut(s) 212
BstPI GGTNACC 1 cut(s) 703
BstSCI CCNGG 4 cut(s) 76, 348, 528, 780
BstSLI GKGCMC 1 cut(s) 766
BstUI CGCG 1 cut(s) 487
BstV1I GCAGC 3 cut(s) 296, 453, 700
BstX2I RGATCY 1 cut(s) 859
BstXI CCANNNNNNTGG 1 cut(s) 651
BstYI RGATCY 1 cut(s) 859
BsuI GTATCC 1 cut(s) 492
BsuRI GGCC 3 cut(s) 81, 217, 305
BtrI CACGTC 1 cut(s) 40
BtsCI GGATG 5 cut(s) 73, 90, 157, 484, 758
BtsI GCAGTG 1 cut(s) 306
BtsIMutI CAGTG 3 cut(s) 193, 306, 642
BveI ACCTGC 1 cut(s) 254
CaiI CAGNNNCTG 1 cut(s) 863
CfoI GCGC 1 cut(s) 489
Csp6I GTAC 4 cut(s) 22, 447, 623, 631
CspCI CAANNNNNGTGG 2 cut(s) 301, 336
CviAII CATG 3 cut(s) 209, 301, 516
CviQI GTAC 4 cut(s) 22, 447, 623, 631
DdeI CTNAG 2 cut(s) 729, 805
DpnI GATC 6 cut(s) 45, 266, 291, 435, 618, 861
DpnII GATC 6 cut(s) 43, 264, 289, 433, 616, 859
EaeI YGGCCR 2 cut(s) 215, 303
Ecl136II GAGCTC 1 cut(s) 811
Eco130I CCWWGG 1 cut(s) 719
Eco24I GRGCYC 1 cut(s) 813
Eco31I GGTCTC 1 cut(s) 725
Eco53kI GAGCTC 1 cut(s) 811
Eco91I GGTNACC 1 cut(s) 703
EcoICRI GAGCTC 1 cut(s) 811
EcoO65I GGTNACC 1 cut(s) 703
EcoRII CCWGG 3 cut(s) 76, 528, 780
EcoT14I CCWWGG 1 cut(s) 719
EcoT38I GRGCYC 1 cut(s) 813
ErhI CCWWGG 1 cut(s) 719
FaeI CATG 3 cut(s) 212, 304, 519
FaiI YATR 6 cut(s) 148, 210, 302, 517, 845, 874
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FaqI GGGAC 2 cut(s) 189, 197
FatI CATG 3 cut(s) 208, 300, 515
Fnu4HI GCNGC 3 cut(s) 285, 467, 714
FokI GGATG 5 cut(s) 60, 77, 164, 491, 765
FriOI GRGCYC 1 cut(s) 813
Fsp4HI GCNGC 3 cut(s) 285, 467, 714
GlaI GCGC 1 cut(s) 488
GluI GCNGC 3 cut(s) 285, 467, 714
GsuI CTGGAG 2 cut(s) 47, 125
HaeIII GGCC 3 cut(s) 81, 217, 305
HapII CCGG 2 cut(s) 94, 350
HhaI GCGC 1 cut(s) 489
Hin1II CATG 3 cut(s) 212, 304, 519
Hin6I GCGC 1 cut(s) 487
HinP1I GCGC 1 cut(s) 487
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HindIII AAGCTT 1 cut(s) 229
HinfI GANTC 2 cut(s) 340, 725
HpaII CCGG 2 cut(s) 94, 350
HphI GGTGA 3 cut(s) 235, 681, 715
Hpy166II GTNNAC 3 cut(s) 31, 633, 764
Hpy188I TCNGA 6 cut(s) 272, 370, 380, 498, 730, 808
Hpy188III TCNNGA 3 cut(s) 47, 104, 863
Hpy8I GTNNAC 3 cut(s) 31, 633, 764
Hpy99I CGWCG 2 cut(s) 44, 173
HpyAV CCTTC 4 cut(s) 172, 217, 347, 500
HpyCH4III ACNGT 5 cut(s) 35, 188, 504, 547, 637
HpyCH4IV ACGT 3 cut(s) 20, 39, 237
HpyCH4V TGCA 5 cut(s) 123, 509, 662, 756, 764
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 817
HpyF3I CTNAG 2 cut(s) 729, 805
HpySE526I ACGT 3 cut(s) 20, 39, 237
Hsp92II CATG 3 cut(s) 212, 304, 519
HspAI GCGC 1 cut(s) 487
KpnI GGTACC 1 cut(s) 626
Kzo9I GATC 6 cut(s) 43, 264, 289, 433, 616, 859
LmnI GCTCC 4 cut(s) 417, 596, 721, 835
Lsp1109I GCAGC 3 cut(s) 296, 453, 700
LweI GCATC 1 cut(s) 743
MaeII ACGT 3 cut(s) 20, 39, 237
MaeIII GTNAC 3 cut(s) 16, 35, 703
MalI GATC 6 cut(s) 45, 266, 291, 435, 618, 861
MboI GATC 6 cut(s) 43, 264, 289, 433, 616, 859
MboII GAAGA 2 cut(s) 355, 578
MflI RGATCY 1 cut(s) 859
MhlI GDGCHC 2 cut(s) 766, 813
MlsI TGGCCA 2 cut(s) 217, 305
MluCI AATT 2 cut(s) 118, 601
MluNI TGGCCA 2 cut(s) 217, 305
Mox20I TGGCCA 2 cut(s) 217, 305
MscI TGGCCA 2 cut(s) 217, 305
MseI TTAA 2 cut(s) 233, 816
Msp20I TGGCCA 2 cut(s) 217, 305
MspI CCGG 2 cut(s) 94, 350
MspR9I CCNGG 4 cut(s) 78, 350, 530, 782
MvaI CCWGG 3 cut(s) 78, 530, 782
MvnI CGCG 1 cut(s) 487
MwoI GCNNNNNNNGC 2 cut(s) 209, 817
NciI CCSGG 1 cut(s) 350
NdeII GATC 6 cut(s) 43, 264, 289, 433, 616, 859
NlaIII CATG 3 cut(s) 212, 304, 519
NlaIV GGNNCC 2 cut(s) 624, 837
NmuCI GTSAC 3 cut(s) 16, 35, 703
NspI RCATGY 1 cut(s) 212
PaqCI CACCTGC 1 cut(s) 254
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 45
PfeI GAWTC 2 cut(s) 340, 725
PfoI TCCNGGA 1 cut(s) 780
PkrI GCNGC 3 cut(s) 286, 468, 715
PsiI TTATAA 1 cut(s) 845
Psp124BI GAGCTC 1 cut(s) 813
Psp1406I AACGTT 1 cut(s) 237
Psp6I CCWGG 3 cut(s) 76, 528, 780
PspEI GGTNACC 1 cut(s) 703
PspGI CCWGG 3 cut(s) 76, 528, 780
PspN4I GGNNCC 2 cut(s) 624, 837
PstNI CAGNNNCTG 1 cut(s) 863
PsuI RGATCY 1 cut(s) 859
RsaI GTAC 4 cut(s) 23, 448, 624, 632
RsaNI GTAC 4 cut(s) 22, 447, 623, 631
SacI GAGCTC 1 cut(s) 813
SaqAI TTAA 2 cut(s) 233, 816
SatI GCNGC 3 cut(s) 285, 467, 714
Sau3AI GATC 6 cut(s) 43, 264, 289, 433, 616, 859
ScrFI CCNGG 4 cut(s) 78, 350, 530, 782
SduI GDGCHC 2 cut(s) 766, 813
SfaNI GCATC 1 cut(s) 743
Sse9I AATT 2 cut(s) 118, 601
SstI GAGCTC 1 cut(s) 813
StyD4I CCNGG 4 cut(s) 76, 348, 528, 780
StyI CCWWGG 1 cut(s) 719
TaaI ACNGT 5 cut(s) 35, 188, 504, 547, 637
TaiI ACGT 3 cut(s) 23, 42, 240
TaqI TCGA 4 cut(s) 42, 171, 199, 789
TasI AATT 2 cut(s) 118, 601
TatI WGTACW 2 cut(s) 446, 630
TfiI GAWTC 2 cut(s) 340, 725
Tru1I TTAA 2 cut(s) 233, 816
Tru9I TTAA 2 cut(s) 233, 816
TscAI CASTG 3 cut(s) 193, 313, 642
TseFI GTSAC 3 cut(s) 16, 35, 703
TseI GCWGC 3 cut(s) 284, 466, 713
Tsp45I GTSAC 3 cut(s) 16, 35, 703
TspDTI ATGAA 2 cut(s) 482, 595
TspGWI ACGGA 1 cut(s) 157
TspRI CASTG 3 cut(s) 193, 313, 642
VneI GTGCAC 1 cut(s) 762
XapI RAATTY 1 cut(s) 601
XceI RCATGY 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.