Rorug02G0051100
ERF Family

Cupin superfamily (DUF985)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0013260
Physical Location & Seq
Forward (+)
3925806 .. 3927322
1517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0051100.1

Sequence Viewer

Length: 1311 bp
ATGTCTATGTCCTCCAAAAAACCGCTTGACCTAACCACCAGCGACGGCGAAGAAGAGAGGCAGCAACACCCGCTCCGCCGGCAGTGCAGTGAACATCGGCATAAGGCTCATAAGCATACGCGTGATGGGAAGAAGAAGAAGACCAAAGAGACAACCAAGCCCAAGTTGAAGTTGAAGTGGGAGTTGGAGTTGGAGTTGGAGGAGGCTAATAAGTCACTCTACATGTGTATTCTAGAGCACGGGACGGACTGGACGGCTTATGTTGTCCGCACCATCAAACTGTCGGATTTGTTATCATCTTCGGCGGTGGGGGACGATCCATTGCCATTGCGGCAAGTGGCTTATGAGGCCGGTTCGCATCTCCCCGGATCTGTGGGTTGCGGTGTTTGGGGATCCCAAATTGTTTTCACCGGCGGCGTGACACCCAGCTCCCCTCACGGCTGGAGGAAAATAGGTCCCGACTCAGTTTGGCATACAAATGTTTATGCCTTTGAAACACACACAAATGAGATCAGAAAGCTTGATGCCAATTTACAAGGAGGGAAACTTTACCCTCTGACGGTGGAACTGGGCGGCAAACTGTACGCTCTTTCCTATAGTCTGGTCAGTCATCCTCCCTCATTTGAGGTATTTGACCCTAAAATAGGCAAGTGGGAAGGTTTGCCCCGGCCTCCATTTTTCCAAGTTGGCTCTCCATATTATGAACATGGCAACTTCTCTTACGCAATCGCCGGCACCAAGATCTTTGCCTCCCATGAAGAATGTCCTGTGTTCTGCTTTGACGTCGCCCATCCAGACAGAGATTGGAGACTGGTCTCTACTATGTGCCGGGGTGGCCCTTTCCCCTTTGATAACAAAGTTGCATTAGTCCTGGACCTGCAGGGGGACGATGACAAGAAAATAATGTTTGCCTACAGTCATGAGCCTTGGCGTCTATGGGTATATCTTATGTCATTGTTTGAAAACCAAGAAATTATCACAAAAATCGGTGATCTGAGGATGCCAGTCTTGCCTGATGAATTGGGTTTGCCACAACGCTGTGAATTTTTGCACATTGGAGGTCAGAAAGCGTGCCTTGTTGTCACCGAAATTGGGGTCCCTGATGAAGACGCTCCTGCTTATAATGAGCTTGGTACTCATAAGAGACACGGTGCAGTCATTCCATTTCAATTTGAAGTTGATATCACCAAGGCGGACAAGGACAAGAAAAATTGTTTAGCACTCCAATTCATGCCTCTTCGCAGCTTCGAATACCATACCAACCCATCCACTCTTCCTGAACCTGAAACGGTTGGTTGCTTTCTGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_5

Protein Analysis

436

Amino Acids

49.26

Weight (kDa)

6.26

Isoelectric Point (pI)

45.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 77 - 288 1.7e-10 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013260)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19130
fragaria_vesca FvH4_1g09020
malus_domestica MD02G1095400.v1.1
prunus_persica Prupe.7G195700_v2.0.a1
pyrus_communis pycom02g07550
rosa_chinensis RchiOBHm_Chr2g0095441
rosa_laevigata RLG00000016566
rosa_multiflora Rmu_co8132630.1_g000001 Rmu_co8397589.1_g000001 Rmu_sc0010847.1_g000003 Rmu_ssc0000183.1_g000046
rosa_roxburghii Rroxscaffold_2G00146370
rosa_rugosa Rorug02G0051100
rosa_samantha Rh2AG099100 Rh2BG100300 Rh2CG102500 Rh2DG100000
rosa_wichuraiana Rw2G007500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1122
AatII GACGTC 1 cut(s) 786
Acc36I ACCTGC 1 cut(s) 885
AccB1I GGYRCC 1 cut(s) 734
AccBSI CCGCTC 1 cut(s) 73
AccII CGCG 1 cut(s) 121
AclWI GGATC 4 cut(s) 311, 376, 387, 400
AcsI RAATTY 1 cut(s) 1043
AcyI GRCGYC 2 cut(s) 783, 931
AfaI GTAC 2 cut(s) 584, 1135
AfiI CCNNNNNNNGG 4 cut(s) 559, 644, 883, 1092
AflIII ACRYGT 2 cut(s) 119, 222
AgsI TTSAA 6 cut(s) 169, 175, 494, 962, 1169, 1175
AjnI CCWGG 1 cut(s) 870
AjuI GAANNNNNNNTTGG 2 cut(s) 167, 199
AluBI AGCT 4 cut(s) 429, 520, 1129, 1245
AluI AGCT 4 cut(s) 429, 520, 1129, 1245
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 4 cut(s) 143, 802, 820, 1138
AlwI GGATC 4 cut(s) 311, 376, 387, 400
AoxI GGCC 3 cut(s) 348, 668, 835
ApeKI GCWGC 2 cut(s) 61, 1242
ApoI RAATTY 1 cut(s) 1043
ArsI GACNNNNNNTTYG 2 cut(s) 1080, 1112
AspS9I GGNCC 4 cut(s) 455, 836, 874, 1096
AsuC2I CCSGG 3 cut(s) 366, 667, 830
AsuHPI GGTGA 4 cut(s) 400, 1001, 1075, 1177
AsuII TTCGAA 1 cut(s) 1248
AvaII GGWCC 3 cut(s) 455, 874, 1096
BamHI GGATCC 1 cut(s) 392
BanI GGYRCC 1 cut(s) 734
BbsI GAAGAC 2 cut(s) 146, 1113
Bbv12I GWGCWC 1 cut(s) 240
BbvI GCAGC 2 cut(s) 73, 1254
BccI CCATC 4 cut(s) 119, 281, 798, 1273
BceAI ACGGC 3 cut(s) 61, 270, 454
BciT130I CCWGG 1 cut(s) 872
BcnI CCSGG 3 cut(s) 366, 667, 830
BcoDI GTCTC 4 cut(s) 143, 802, 820, 1138
BfaI CTAG 1 cut(s) 233
BfmI CTRYAG 3 cut(s) 595, 878, 913
BfuAI ACCTGC 1 cut(s) 885
BglI GCCNNNNNGGC 2 cut(s) 331, 834
BglII AGATCT 1 cut(s) 741
BisI GCNGC 5 cut(s) 62, 332, 415, 574, 1243
BlsI GCNGC 5 cut(s) 63, 333, 416, 575, 1244
Bme1390I CCNGG 4 cut(s) 366, 667, 830, 872
Bme18I GGWCC 3 cut(s) 455, 874, 1096
BmgT120I GGNCC 4 cut(s) 455, 836, 874, 1096
BmiI GGNNCC 5 cut(s) 394, 457, 736, 1097, 1098
BmrFI CCNGG 4 cut(s) 366, 667, 830, 872
BmrI ACTGGG 1 cut(s) 578
BmsI GCATC 3 cut(s) 367, 514, 990
BmuI ACTGGG 1 cut(s) 578
BpiI GAAGAC 2 cut(s) 146, 1113
BpmI CTGGAG 1 cut(s) 463
Bpu14I TTCGAA 1 cut(s) 1248
BpuMI CCSGG 3 cut(s) 366, 667, 830
BsaHI GRCGYC 2 cut(s) 783, 931
BsaI GGTCTC 1 cut(s) 820
BsaJI CCNNGG 5 cut(s) 364, 665, 829, 926, 1188
BsaXI ACNNNNNCTCC 6 cut(s) 57, 87, 173, 179, 203, 209
Bsc4I CCNNNNNNNGG 4 cut(s) 559, 644, 883, 1092
Bse118I RCCGGY 4 cut(s) 78, 350, 410, 731
Bse1I ACTGG 4 cut(s) 254, 573, 816, 1004
Bse3DI GCAATG 2 cut(s) 320, 326
BseBI CCWGG 1 cut(s) 872
BseDI CCNNGG 5 cut(s) 364, 665, 829, 926, 1188
BseGI GGATG 4 cut(s) 610, 790, 1005, 1265
BseLI CCNNNNNNNGG 4 cut(s) 559, 644, 883, 1092
BseMI GCAATG 2 cut(s) 320, 326
BseMII CTCAG 2 cut(s) 477, 986
BseNI ACTGG 4 cut(s) 254, 573, 816, 1004
BseRI GAGGAG 1 cut(s) 215
BseXI GCAGC 2 cut(s) 73, 1254
BseYI CCCAGC 1 cut(s) 425
BsgI GTGCAG 2 cut(s) 106, 1173
Bsh1236I CGCG 1 cut(s) 121
BshFI GGCC 3 cut(s) 350, 670, 837
BshNI GGYRCC 1 cut(s) 734
BsiHKAI GWGCWC 1 cut(s) 240
BsiSI CCGG 7 cut(s) 79, 351, 366, 411, 667, 732, 829
BslFI GGGAC 5 cut(s) 256, 326, 441, 899, 1082
BslI CCNNNNNNNGG 4 cut(s) 559, 644, 883, 1092
BsmAI GTCTC 4 cut(s) 143, 802, 820, 1138
BsmFI GGGAC 5 cut(s) 256, 326, 441, 899, 1082
BsnI GGCC 3 cut(s) 350, 670, 837
Bso31I GGTCTC 1 cut(s) 820
Bsp119I TTCGAA 1 cut(s) 1248
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 6 cut(s) 316, 368, 392, 510, 741, 991
BspANI GGCC 3 cut(s) 350, 670, 837
BspCNI CTCAG 2 cut(s) 476, 987
BspFNI CGCG 1 cut(s) 121
BspHI TCATGA 1 cut(s) 919
BspLI GGNNCC 5 cut(s) 394, 457, 736, 1097, 1098
BspMAI CTGCAG 1 cut(s) 882
BspMI ACCTGC 1 cut(s) 885
BspPI GGATC 4 cut(s) 311, 376, 387, 400
BspT104I TTCGAA 1 cut(s) 1248
BspT107I GGYRCC 1 cut(s) 734
BspTNI GGTCTC 1 cut(s) 820
BsrBI CCGCTC 1 cut(s) 73
BsrDI GCAATG 2 cut(s) 320, 326
BsrFI RCCGGY 4 cut(s) 78, 350, 410, 731
BsrI ACTGG 4 cut(s) 254, 573, 816, 1004
BssAI RCCGGY 4 cut(s) 78, 350, 410, 731
BssECI CCNNGG 5 cut(s) 364, 665, 829, 926, 1188
BssMI GATC 6 cut(s) 316, 368, 392, 510, 741, 991
BssNI GRCGYC 2 cut(s) 783, 931
BssT1I CCWWGG 2 cut(s) 926, 1188
Bst2UI CCWGG 1 cut(s) 872
Bst4CI ACNGT 6 cut(s) 282, 562, 582, 917, 1151, 1291
Bst6I CTCTTC 3 cut(s) 48, 1242, 1278
BstACI GRCGYC 2 cut(s) 783, 931
BstBI TTCGAA 1 cut(s) 1248
BstC8I GCNNGC 3 cut(s) 80, 733, 1072
BstDEI CTNAG 2 cut(s) 463, 995
BstENI CCTNNNNNAGG 1 cut(s) 642
BstF5I GGATG 4 cut(s) 610, 790, 1005, 1265
BstFNI CGCG 1 cut(s) 121
BstKTI GATC 6 cut(s) 319, 371, 395, 513, 744, 994
BstMAI GTCTC 4 cut(s) 143, 802, 820, 1138
BstMBI GATC 6 cut(s) 316, 368, 392, 510, 741, 991
BstMWI GCNNNNNNNGC 7 cut(s) 70, 79, 84, 331, 347, 834, 1009
BstNI CCWGG 1 cut(s) 872
BstNSI RCATGY 1 cut(s) 226
BstSCI CCNGG 4 cut(s) 364, 665, 828, 870
BstSFI CTRYAG 3 cut(s) 595, 878, 913
BstUI CGCG 1 cut(s) 121
BstV1I GCAGC 2 cut(s) 73, 1254
BstV2I GAAGAC 2 cut(s) 146, 1113
BstX2I RGATCY 3 cut(s) 368, 392, 741
BstYI RGATCY 3 cut(s) 368, 392, 741
BsuRI GGCC 3 cut(s) 350, 670, 837
BtsCI GGATG 4 cut(s) 610, 790, 1005, 1265
BtsI GCAGTG 2 cut(s) 89, 94
BtsIMutI CAGTG 2 cut(s) 89, 94
BveI ACCTGC 1 cut(s) 885
Cac8I GCNNGC 3 cut(s) 80, 733, 1072
CciI TCATGA 1 cut(s) 919
Cfr10I RCCGGY 4 cut(s) 78, 350, 410, 731
Cfr13I GGNCC 4 cut(s) 455, 836, 874, 1096
CseI GACGC 2 cut(s) 920, 1118
Csp6I GTAC 2 cut(s) 583, 1134
CviAII CATG 5 cut(s) 223, 707, 755, 920, 1231
CviQI GTAC 2 cut(s) 583, 1134
DdeI CTNAG 2 cut(s) 463, 995
DpnI GATC 6 cut(s) 318, 370, 394, 512, 743, 993
DpnII GATC 6 cut(s) 316, 368, 392, 510, 741, 991
Eam1104I CTCTTC 3 cut(s) 48, 1242, 1278
EarI CTCTTC 3 cut(s) 48, 1242, 1278
EciI GGCGGA 2 cut(s) 65, 1208
Eco130I CCWWGG 2 cut(s) 926, 1188
Eco31I GGTCTC 1 cut(s) 820
Eco32I GATATC 1 cut(s) 1183
Eco47I GGWCC 3 cut(s) 455, 874, 1096
EcoNI CCTNNNNNAGG 1 cut(s) 642
EcoO109I RGGNCCY 2 cut(s) 455, 1096
EcoRII CCWGG 1 cut(s) 870
EcoRV GATATC 1 cut(s) 1183
EcoT14I CCWWGG 2 cut(s) 926, 1188
ErhI CCWWGG 2 cut(s) 926, 1188
FaeI CATG 5 cut(s) 226, 710, 758, 923, 1234
FalI AAGNNNNNCTT 2 cut(s) 1059, 1091
FaqI GGGAC 5 cut(s) 256, 326, 441, 899, 1082
FatI CATG 5 cut(s) 222, 706, 754, 919, 1230
FauI CCCGC 1 cut(s) 78
Fnu4HI GCNGC 5 cut(s) 62, 332, 415, 574, 1243
FokI GGATG 4 cut(s) 597, 777, 1012, 1252
Fsp4HI GCNGC 5 cut(s) 62, 332, 415, 574, 1243
FspBI CTAG 1 cut(s) 233
GluI GCNGC 5 cut(s) 62, 332, 415, 574, 1243
GsaI CCCAGC 1 cut(s) 429
GsuI CTGGAG 1 cut(s) 463
HaeIII GGCC 3 cut(s) 350, 670, 837
HapII CCGG 7 cut(s) 79, 351, 366, 411, 667, 732, 829
HgaI GACGC 2 cut(s) 920, 1118
Hin1I GRCGYC 2 cut(s) 783, 931
Hin1II CATG 5 cut(s) 226, 710, 758, 923, 1234
HindIII AAGCTT 1 cut(s) 518
HinfI GANTC 1 cut(s) 461
HpaII CCGG 7 cut(s) 79, 351, 366, 411, 667, 732, 829
HphI GGTGA 4 cut(s) 400, 1001, 1075, 1177
Hpy166II GTNNAC 1 cut(s) 92
Hpy188I TCNGA 5 cut(s) 286, 515, 558, 996, 1065
Hpy188III TCNNGA 5 cut(s) 233, 458, 794, 920, 1277
Hpy8I GTNNAC 1 cut(s) 92
Hpy99I CGWCG 2 cut(s) 47, 788
HpyAV CCTTC 1 cut(s) 650
HpyCH4III ACNGT 6 cut(s) 282, 562, 582, 917, 1151, 1291
HpyCH4IV ACGT 1 cut(s) 783
HpyCH4V TGCA 5 cut(s) 87, 863, 880, 1051, 1154
HpyF10VI GCNNNNNNNGC 7 cut(s) 70, 79, 84, 331, 347, 834, 1009
HpyF3I CTNAG 2 cut(s) 463, 995
HpySE526I ACGT 1 cut(s) 783
Hsp92I GRCGYC 2 cut(s) 783, 931
Hsp92II CATG 5 cut(s) 226, 710, 758, 923, 1234
KflI GGGWCCC 1 cut(s) 1096
KroI GCCGGC 2 cut(s) 78, 731
KroNI GCCGGC 2 cut(s) 80, 733
Kzo9I GATC 6 cut(s) 316, 368, 392, 510, 741, 991
LmnI GCTCC 3 cut(s) 78, 434, 1117
Lsp1109I GCAGC 2 cut(s) 73, 1254
LweI GCATC 3 cut(s) 367, 514, 990
MaeI CTAG 1 cut(s) 233
MaeII ACGT 1 cut(s) 783
MaeIII GTNAC 3 cut(s) 213, 418, 1081
MalI GATC 6 cut(s) 318, 370, 394, 512, 743, 993
MbiI CCGCTC 1 cut(s) 73
MboI GATC 6 cut(s) 316, 368, 392, 510, 741, 991
MflI RGATCY 3 cut(s) 368, 392, 741
MhlI GDGCHC 1 cut(s) 240
MluCI AATT 9 cut(s) 399, 529, 972, 1019, 1043, 1089, 1169, 1210, 1226
MluI ACGCGT 1 cut(s) 119
MlyI GAGTC 1 cut(s) 455
MmeI TCCRAC 4 cut(s) 165, 171, 177, 264
MroNI GCCGGC 2 cut(s) 78, 731
MslI CAYNNNNRTG 3 cut(s) 120, 477, 504
MspI CCGG 7 cut(s) 79, 351, 366, 411, 667, 732, 829
MspR9I CCNGG 4 cut(s) 366, 667, 830, 872
MvaI CCWGG 1 cut(s) 872
MvnI CGCG 1 cut(s) 121
MwoI GCNNNNNNNGC 7 cut(s) 70, 79, 84, 331, 347, 834, 1009
NaeI GCCGGC 2 cut(s) 80, 733
NciI CCSGG 3 cut(s) 366, 667, 830
NdeII GATC 6 cut(s) 316, 368, 392, 510, 741, 991
NgoMIV GCCGGC 2 cut(s) 78, 731
NlaIII CATG 5 cut(s) 226, 710, 758, 923, 1234
NlaIV GGNNCC 5 cut(s) 394, 457, 736, 1097, 1098
NmuCI GTSAC 3 cut(s) 213, 418, 1081
NspI RCATGY 1 cut(s) 226
NspV TTCGAA 1 cut(s) 1248
PagI TCATGA 1 cut(s) 919
PciI ACATGT 1 cut(s) 222
PdiI GCCGGC 2 cut(s) 80, 733
PfoI TCCNGGA 1 cut(s) 870
PkrI GCNGC 5 cut(s) 63, 333, 416, 575, 1244
PleI GAGTC 1 cut(s) 455
PpsI GAGTC 1 cut(s) 455
PpuMI RGGWCCY 2 cut(s) 455, 1096
PscI ACATGT 1 cut(s) 222
PsiI TTATAA 1 cut(s) 1122
Psp5II RGGWCCY 2 cut(s) 455, 1096
Psp6I CCWGG 1 cut(s) 870
PspFI CCCAGC 1 cut(s) 425
PspGI CCWGG 1 cut(s) 870
PspN4I GGNNCC 5 cut(s) 394, 457, 736, 1097, 1098
PspPI GGNCC 4 cut(s) 455, 836, 874, 1096
PspPPI RGGWCCY 2 cut(s) 455, 1096
PstI CTGCAG 1 cut(s) 882
PsuI RGATCY 3 cut(s) 368, 392, 741
RsaI GTAC 2 cut(s) 584, 1135
RsaNI GTAC 2 cut(s) 583, 1134
RseI CAYNNNNRTG 3 cut(s) 120, 477, 504
SatI GCNGC 5 cut(s) 62, 332, 415, 574, 1243
Sau3AI GATC 6 cut(s) 316, 368, 392, 510, 741, 991
Sau96I GGNCC 4 cut(s) 455, 836, 874, 1096
SbfI CCTGCAGG 1 cut(s) 882
SchI GAGTC 1 cut(s) 455
ScrFI CCNGG 4 cut(s) 366, 667, 830, 872
SdaI CCTGCAGG 1 cut(s) 882
SduI GDGCHC 1 cut(s) 240
SfaNI GCATC 3 cut(s) 367, 514, 990
SfcI CTRYAG 3 cut(s) 595, 878, 913
SfuI TTCGAA 1 cut(s) 1248
SgrAI CRCCGGYG 1 cut(s) 410
SinI GGWCC 3 cut(s) 455, 874, 1096
SmiMI CAYNNNNRTG 3 cut(s) 120, 477, 504
Sse8387I CCTGCAGG 1 cut(s) 882
Sse9I AATT 9 cut(s) 399, 529, 972, 1019, 1043, 1089, 1169, 1210, 1226
SspMI CTAG 1 cut(s) 233
StyD4I CCNGG 4 cut(s) 364, 665, 828, 870
StyI CCWWGG 2 cut(s) 926, 1188
TaaI ACNGT 6 cut(s) 282, 562, 582, 917, 1151, 1291
TaiI ACGT 1 cut(s) 786
TaqI TCGA 1 cut(s) 1248
TasI AATT 9 cut(s) 399, 529, 972, 1019, 1043, 1089, 1169, 1210, 1226
TauI GCSGC 3 cut(s) 334, 417, 576
TscAI CASTG 2 cut(s) 89, 94
TseFI GTSAC 3 cut(s) 213, 418, 1081
TseI GCWGC 2 cut(s) 61, 1242
Tsp45I GTSAC 3 cut(s) 213, 418, 1081
TspDTI ATGAA 5 cut(s) 717, 771, 1032, 1119, 1219
TspGWI ACGGA 1 cut(s) 260
TspRI CASTG 2 cut(s) 89, 94
VpaK11BI GGWCC 3 cut(s) 455, 874, 1096
XagI CCTNNNNNAGG 1 cut(s) 642
XapI RAATTY 1 cut(s) 1043
XbaI TCTAGA 1 cut(s) 232
XceI RCATGY 1 cut(s) 226
XcmI CCANNNNNNNNNTGG 1 cut(s) 801
XspI CTAG 1 cut(s) 233
ZraI GACGTC 1 cut(s) 784
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.