Rmu_co8132630.1_g000001
ERF Family

Cupin superfamily (DUF985)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8132630.1
OG0013260
Physical Location & Seq
Forward (+)
1 .. 326
326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8132630.1_g000001.1.cds

Sequence Viewer

Length: 326 bp
tggagttgaatgaggaagatgggaaagtcaaactaacaaacattggagcaaatttcattggagaggatcaggtaccccagtacacagtgcctccaaatgtttggtttggtgcatttcctacaaaggacttcaacatttcaccagatgggggggtgaccaaagctgctccaagggattctgagacccactactctctcgtgggatgcacttgtgcaccagcctttcagttccaggatttcgagttggcaaaacgctcagagctcattaagcacttccctgatagggagcctcttataacattgctaacagatcctgaaaaagcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_5

Protein Analysis

107

Amino Acids

11.88

Weight (kDa)

4.66

Isoelectric Point (pI)

52.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013260)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19130
fragaria_vesca FvH4_1g09020
malus_domestica MD02G1095400.v1.1
prunus_persica Prupe.7G195700_v2.0.a1
pyrus_communis pycom02g07550
rosa_chinensis RchiOBHm_Chr2g0095441
rosa_laevigata RLG00000016566
rosa_multiflora Rmu_co8132630.1_g000001 Rmu_co8397589.1_g000001 Rmu_sc0010847.1_g000003 Rmu_ssc0000183.1_g000046
rosa_roxburghii Rroxscaffold_2G00146370
rosa_rugosa Rorug02G0051100
rosa_samantha Rh2AG099100 Rh2BG100300 Rh2CG102500 Rh2DG100000
rosa_wichuraiana Rw2G007500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 295
Acc65I GGTACC 1 cut(s) 72
AccB1I GGYRCC 1 cut(s) 72
AclWI GGATC 2 cut(s) 74, 304
AcsI RAATTY 1 cut(s) 51
AfaI GTAC 2 cut(s) 74, 82
AfiI CCNNNNNNNGG 2 cut(s) 148, 282
AgsI TTSAA 2 cut(s) 9, 132
AjnI CCWGG 1 cut(s) 230
AluBI AGCT 2 cut(s) 163, 261
AluI AGCT 2 cut(s) 163, 261
Alw21I GWGCWC 2 cut(s) 216, 263
Alw26I GTCTC 1 cut(s) 175
Alw44I GTGCAC 1 cut(s) 212
AlwI GGATC 2 cut(s) 74, 304
AlwNI CAGNNNCTG 1 cut(s) 313
ApaLI GTGCAC 1 cut(s) 212
ApeKI GCWGC 1 cut(s) 163
ApoI RAATTY 1 cut(s) 51
Asp718I GGTACC 1 cut(s) 72
AsuHPI GGTGA 2 cut(s) 131, 165
BaeGI GKGCMC 1 cut(s) 216
BaeI ACNNNNGTAYC 2 cut(s) 64, 97
BanI GGYRCC 1 cut(s) 72
BanII GRGCYC 1 cut(s) 263
BauI CACGAG 1 cut(s) 196
Bbv12I GWGCWC 2 cut(s) 216, 263
BbvI GCAGC 1 cut(s) 150
BccI CCATC 2 cut(s) 13, 139
BciT130I CCWGG 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 175
BisI GCNGC 1 cut(s) 164
BlsI GCNGC 1 cut(s) 165
Bme1390I CCNGG 1 cut(s) 232
BmiI GGNNCC 2 cut(s) 74, 287
BmrFI CCNGG 1 cut(s) 232
BmrI ACTGGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 193
BmuI ACTGGG 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 175
BsaJI CCNNGG 1 cut(s) 169
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 282
Bse1I ACTGG 1 cut(s) 78
Bse3DI GCAATG 1 cut(s) 298
BseBI CCWGG 1 cut(s) 232
BseDI CCNNGG 1 cut(s) 169
BseGI GGATG 1 cut(s) 208
BseLI CCNNNNNNNGG 2 cut(s) 148, 282
BseMI GCAATG 1 cut(s) 298
BseMII CTCAG 2 cut(s) 170, 269
BseNI ACTGG 1 cut(s) 78
BseSI GKGCMC 1 cut(s) 216
BseXI GCAGC 1 cut(s) 150
BshNI GGYRCC 1 cut(s) 72
BsiHKAI GWGCWC 2 cut(s) 216, 263
BslI CCNNNNNNNGG 2 cut(s) 148, 282
BsmAI GTCTC 1 cut(s) 175
Bso31I GGTCTC 1 cut(s) 175
Bsp1286I GDGCHC 2 cut(s) 216, 263
Bsp143I GATC 2 cut(s) 66, 309
BspCNI CTCAG 2 cut(s) 171, 268
BspLI GGNNCC 2 cut(s) 74, 287
BspPI GGATC 2 cut(s) 74, 304
BspT107I GGYRCC 1 cut(s) 72
BspTNI GGTCTC 1 cut(s) 175
BsrDI GCAATG 1 cut(s) 298
BsrI ACTGG 1 cut(s) 78
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 2 cut(s) 66, 309
BssSI CACGAG 1 cut(s) 196
BssT1I CCWWGG 1 cut(s) 169
Bst2BI CACGAG 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 232
Bst4CI ACNGT 1 cut(s) 87
BstDEI CTNAG 2 cut(s) 179, 255
BstEII GGTNACC 1 cut(s) 153
BstF5I GGATG 1 cut(s) 208
BstKTI GATC 2 cut(s) 69, 312
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 2 cut(s) 66, 309
BstMWI GCNNNNNNNGC 1 cut(s) 267
BstNI CCWGG 1 cut(s) 232
BstPI GGTNACC 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 230
BstSLI GKGCMC 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 150
BstX2I RGATCY 1 cut(s) 309
BstXI CCANNNNNNTGG 1 cut(s) 101
BstYI RGATCY 1 cut(s) 309
BtsCI GGATG 1 cut(s) 208
BtsIMutI CAGTG 1 cut(s) 92
CaiI CAGNNNCTG 1 cut(s) 313
Csp6I GTAC 2 cut(s) 73, 81
CviJI RGCY 4 cut(s) 163, 220, 261, 288
CviKI_1 RGCY 4 cut(s) 163, 220, 261, 288
CviQI GTAC 2 cut(s) 73, 81
DdeI CTNAG 2 cut(s) 179, 255
DpnI GATC 2 cut(s) 68, 311
DpnII GATC 2 cut(s) 66, 309
Ecl136II GAGCTC 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 263
Eco31I GGTCTC 1 cut(s) 175
Eco53kI GAGCTC 1 cut(s) 261
Eco91I GGTNACC 1 cut(s) 153
EcoICRI GAGCTC 1 cut(s) 261
EcoO65I GGTNACC 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 230
EcoT14I CCWWGG 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 169
FaiI YATR 2 cut(s) 295, 324
Fnu4HI GCNGC 1 cut(s) 164
FokI GGATG 1 cut(s) 215
FriOI GRGCYC 1 cut(s) 263
Fsp4HI GCNGC 1 cut(s) 164
GluI GCNGC 1 cut(s) 164
HinfI GANTC 1 cut(s) 175
HphI GGTGA 2 cut(s) 131, 165
Hpy166II GTNNAC 2 cut(s) 83, 214
Hpy188I TCNGA 2 cut(s) 180, 258
Hpy188III TCNNGA 1 cut(s) 313
Hpy8I GTNNAC 2 cut(s) 83, 214
HpyCH4III ACNGT 1 cut(s) 87
HpyCH4V TGCA 3 cut(s) 112, 206, 214
HpyF10VI GCNNNNNNNGC 1 cut(s) 267
HpyF3I CTNAG 2 cut(s) 179, 255
KpnI GGTACC 1 cut(s) 76
Kzo9I GATC 2 cut(s) 66, 309
LmnI GCTCC 3 cut(s) 46, 171, 285
LpnPI CCDG 7 cut(s) 55, 91, 155, 217, 230, 244, 290
Lsp1109I GCAGC 1 cut(s) 150
LweI GCATC 1 cut(s) 193
MaeIII GTNAC 1 cut(s) 153
MalI GATC 2 cut(s) 68, 311
MboI GATC 2 cut(s) 66, 309
MboII GAAGA 1 cut(s) 28
MflI RGATCY 1 cut(s) 309
MhlI GDGCHC 2 cut(s) 216, 263
MluCI AATT 1 cut(s) 51
MnlI CCTC 4 cut(s) 6, 57, 101, 299
MseI TTAA 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 232
MvaI CCWGG 1 cut(s) 232
MwoI GCNNNNNNNGC 1 cut(s) 267
NdeII GATC 2 cut(s) 66, 309
NlaIV GGNNCC 2 cut(s) 74, 287
NmuCI GTSAC 1 cut(s) 153
PfeI GAWTC 1 cut(s) 175
PfoI TCCNGGA 1 cut(s) 230
PkrI GCNGC 1 cut(s) 165
PsiI TTATAA 1 cut(s) 295
Psp124BI GAGCTC 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 230
PspEI GGTNACC 1 cut(s) 153
PspGI CCWGG 1 cut(s) 230
PspN4I GGNNCC 2 cut(s) 74, 287
PstNI CAGNNNCTG 1 cut(s) 313
PsuI RGATCY 1 cut(s) 309
RsaI GTAC 2 cut(s) 74, 82
RsaNI GTAC 2 cut(s) 73, 81
SacI GAGCTC 1 cut(s) 263
SaqAI TTAA 1 cut(s) 266
SatI GCNGC 1 cut(s) 164
Sau3AI GATC 2 cut(s) 66, 309
ScrFI CCNGG 1 cut(s) 232
SduI GDGCHC 2 cut(s) 216, 263
SetI ASST 3 cut(s) 74, 165, 263
SfaNI GCATC 1 cut(s) 193
Sse9I AATT 1 cut(s) 51
SstI GAGCTC 1 cut(s) 263
StyD4I CCNGG 1 cut(s) 230
StyI CCWWGG 1 cut(s) 169
TaaI ACNGT 1 cut(s) 87
TaqI TCGA 1 cut(s) 239
TasI AATT 1 cut(s) 51
TatI WGTACW 1 cut(s) 80
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TscAI CASTG 1 cut(s) 92
TseFI GTSAC 1 cut(s) 153
TseI GCWGC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 153
TspDTI ATGAA 1 cut(s) 45
TspRI CASTG 1 cut(s) 92
VneI GTGCAC 1 cut(s) 212
XapI RAATTY 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.