RchiOBHm_Chr2g0095441
ERF Family

Cupin superfamily (DUF985)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0013260
Physical Location & Seq
Reverse (-)
8370802 .. 8372830
2029 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47042

Sequence Viewer

Length: 576 bp
ATGGCCACTGCCACCCAGATTGTTGAGAAACTGAAACTGAATCCACACCCGGAAGGTGGTTTCTTCTCTGAAACTTTCAGAGACACTTCCATTCTCCTCCCCTTGTGTCAGCTCCCACCAGACTACAAGGTTGATCGCCCTGTGAGTACAGCTATTTACTTCTTGCTGCCAACTGGGGATGTTTCGCGCCTTCATCGGATACCGTGTGCAGAAACATGGCATTTCTACCTGGGAGAACCTCTTACGGTGATGGAGTTGAATGAGGAAGATGGGAAAGTCAAACTAACAAACATTGGAGCAAATTTCATTGGAGAGGATCAGGTACCCCAGTACACAGTGCCTCCAAATGTTTGGTTTGGTGCATTTCCTACAAAGGACTTCAACATTTCACCAGATGGGGGGGTGACCAAAGCTGCTCCAAGGGATTCTGAGACCCACTACTCTCTCGTGGGATGCACTTGTGCACCAGCCTTTCAGTTCCAGGATTTTGAGTTGGCAAAACGCTCAGAGCTCATTAAGCACTTCCCTGATAGGGAGCCTCTTATAATATTGCTAACAGATCCTGAAAAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_5

Protein Analysis

191

Amino Acids

21.41

Weight (kDa)

4.98

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_5 PF06172 6 - 166 4e-42 Cupin superfamily (DUF985)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013260)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19130
fragaria_vesca FvH4_1g09020
malus_domestica MD02G1095400.v1.1
prunus_persica Prupe.7G195700_v2.0.a1
pyrus_communis pycom02g07550
rosa_chinensis RchiOBHm_Chr2g0095441
rosa_laevigata RLG00000016566
rosa_multiflora Rmu_co8132630.1_g000001 Rmu_co8397589.1_g000001 Rmu_sc0010847.1_g000003 Rmu_ssc0000183.1_g000046
rosa_roxburghii Rroxscaffold_2G00146370
rosa_rugosa Rorug02G0051100
rosa_samantha Rh2AG099100 Rh2BG100300 Rh2CG102500 Rh2DG100000
rosa_wichuraiana Rw2G007500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 545
Acc65I GGTACC 1 cut(s) 322
AccB1I GGYRCC 1 cut(s) 322
AccII CGCG 1 cut(s) 187
AclWI GGATC 2 cut(s) 324, 554
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 301
AfaI GTAC 3 cut(s) 148, 324, 332
AfiI CCNNNNNNNGG 3 cut(s) 56, 398, 532
AgsI TTSAA 2 cut(s) 259, 382
AjnI CCWGG 2 cut(s) 228, 480
AluBI AGCT 4 cut(s) 112, 152, 413, 511
AluI AGCT 4 cut(s) 112, 152, 413, 511
Alw21I GWGCWC 2 cut(s) 466, 513
Alw26I GTCTC 2 cut(s) 75, 425
Alw44I GTGCAC 1 cut(s) 462
AlwI GGATC 2 cut(s) 324, 554
AlwNI CAGNNNCTG 1 cut(s) 563
AoxI GGCC 1 cut(s) 3
ApaLI GTGCAC 1 cut(s) 462
ApeKI GCWGC 2 cut(s) 166, 413
ApoI RAATTY 1 cut(s) 301
Asp718I GGTACC 1 cut(s) 322
AspLEI GCGC 1 cut(s) 189
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 3 cut(s) 259, 381, 415
BaeGI GKGCMC 1 cut(s) 466
BaeI ACNNNNGTAYC 2 cut(s) 314, 347
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 322
BanII GRGCYC 1 cut(s) 513
BauI CACGAG 1 cut(s) 446
Bbv12I GWGCWC 2 cut(s) 466, 513
BbvI GCAGC 2 cut(s) 153, 400
BccI CCATC 3 cut(s) 244, 263, 389
BciT130I CCWGG 2 cut(s) 230, 482
BciVI GTATCC 1 cut(s) 192
BcnI CCSGG 1 cut(s) 50
BcoDI GTCTC 2 cut(s) 75, 425
BfuI GTATCC 1 cut(s) 192
BisI GCNGC 2 cut(s) 167, 414
BlsI GCNGC 2 cut(s) 168, 415
Bme1390I CCNGG 3 cut(s) 50, 230, 482
BmiI GGNNCC 2 cut(s) 324, 537
BmrFI CCNGG 3 cut(s) 50, 230, 482
BmrI ACTGGG 2 cut(s) 183, 322
BmsI GCATC 1 cut(s) 443
BmuI ACTGGG 2 cut(s) 183, 322
BpuMI CCSGG 1 cut(s) 50
BsaI GGTCTC 1 cut(s) 425
BsaJI CCNNGG 2 cut(s) 229, 419
BsaXI ACNNNNNCTCC 2 cut(s) 325, 355
Bsc4I CCNNNNNNNGG 3 cut(s) 56, 398, 532
Bse1I ACTGG 2 cut(s) 178, 328
BseBI CCWGG 2 cut(s) 230, 482
BseDI CCNNGG 2 cut(s) 229, 419
BseGI GGATG 2 cut(s) 184, 458
BseLI CCNNNNNNNGG 3 cut(s) 56, 398, 532
BseMII CTCAG 2 cut(s) 420, 519
BseNI ACTGG 2 cut(s) 178, 328
BseRI GAGGAG 1 cut(s) 86
BseSI GKGCMC 1 cut(s) 466
BseXI GCAGC 2 cut(s) 153, 400
BsgI GTGCAG 1 cut(s) 228
Bsh1236I CGCG 1 cut(s) 187
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 322
BsiHKAI GWGCWC 2 cut(s) 466, 513
BsiSI CCGG 1 cut(s) 50
BslI CCNNNNNNNGG 3 cut(s) 56, 398, 532
BsmAI GTCTC 2 cut(s) 75, 425
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 425
Bsp1286I GDGCHC 2 cut(s) 466, 513
Bsp143I GATC 3 cut(s) 133, 316, 559
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 421, 518
BspFNI CGCG 1 cut(s) 187
BspLI GGNNCC 2 cut(s) 324, 537
BspPI GGATC 2 cut(s) 324, 554
BspT107I GGYRCC 1 cut(s) 322
BspTNI GGTCTC 1 cut(s) 425
BsrI ACTGG 2 cut(s) 178, 328
BssECI CCNNGG 2 cut(s) 229, 419
BssMI GATC 3 cut(s) 133, 316, 559
BssSI CACGAG 1 cut(s) 446
BssT1I CCWWGG 1 cut(s) 419
Bst2BI CACGAG 1 cut(s) 446
Bst2UI CCWGG 2 cut(s) 230, 482
Bst4CI ACNGT 3 cut(s) 204, 247, 337
BstDEI CTNAG 2 cut(s) 429, 505
BstEII GGTNACC 1 cut(s) 403
BstF5I GGATG 2 cut(s) 184, 458
BstFNI CGCG 1 cut(s) 187
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 3 cut(s) 136, 319, 562
BstMAI GTCTC 2 cut(s) 75, 425
BstMBI GATC 3 cut(s) 133, 316, 559
BstMWI GCNNNNNNNGC 1 cut(s) 517
BstNI CCWGG 2 cut(s) 230, 482
BstPI GGTNACC 1 cut(s) 403
BstSCI CCNGG 3 cut(s) 48, 228, 480
BstSLI GKGCMC 1 cut(s) 466
BstUI CGCG 1 cut(s) 187
BstV1I GCAGC 2 cut(s) 153, 400
BstX2I RGATCY 1 cut(s) 559
BstXI CCANNNNNNTGG 1 cut(s) 351
BstYI RGATCY 1 cut(s) 559
BsuI GTATCC 1 cut(s) 192
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 184, 458
BtsI GCAGTG 1 cut(s) 6
BtsIMutI CAGTG 2 cut(s) 6, 342
CaiI CAGNNNCTG 1 cut(s) 563
CfoI GCGC 1 cut(s) 189
Csp6I GTAC 3 cut(s) 147, 323, 331
CspCI CAANNNNNGTGG 1 cut(s) 36
CviAII CATG 1 cut(s) 216
CviJI RGCY 7 cut(s) 5, 112, 152, 413, 470, 511, 538
CviKI_1 RGCY 7 cut(s) 5, 112, 152, 413, 470, 511, 538
CviQI GTAC 3 cut(s) 147, 323, 331
DdeI CTNAG 2 cut(s) 429, 505
DpnI GATC 3 cut(s) 135, 318, 561
DpnII GATC 3 cut(s) 133, 316, 559
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 511
Eco130I CCWWGG 1 cut(s) 419
Eco24I GRGCYC 1 cut(s) 513
Eco31I GGTCTC 1 cut(s) 425
Eco53kI GAGCTC 1 cut(s) 511
Eco91I GGTNACC 1 cut(s) 403
EcoICRI GAGCTC 1 cut(s) 511
EcoO65I GGTNACC 1 cut(s) 403
EcoRII CCWGG 2 cut(s) 228, 480
EcoT14I CCWWGG 1 cut(s) 419
EcoT38I GRGCYC 1 cut(s) 513
ErhI CCWWGG 1 cut(s) 419
FaeI CATG 1 cut(s) 219
FaiI YATR 3 cut(s) 217, 545, 574
FatI CATG 1 cut(s) 215
Fnu4HI GCNGC 2 cut(s) 167, 414
FokI GGATG 2 cut(s) 191, 465
FriOI GRGCYC 1 cut(s) 513
Fsp4HI GCNGC 2 cut(s) 167, 414
GlaI GCGC 1 cut(s) 188
GluI GCNGC 2 cut(s) 167, 414
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 50
HhaI GCGC 1 cut(s) 189
Hin1II CATG 1 cut(s) 219
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HinfI GANTC 2 cut(s) 40, 425
HpaII CCGG 1 cut(s) 50
HphI GGTGA 3 cut(s) 259, 381, 415
Hpy166II GTNNAC 2 cut(s) 333, 464
Hpy188I TCNGA 5 cut(s) 70, 80, 198, 430, 508
Hpy188III TCNNGA 1 cut(s) 563
Hpy8I GTNNAC 2 cut(s) 333, 464
HpyAV CCTTC 2 cut(s) 47, 200
HpyCH4III ACNGT 3 cut(s) 204, 247, 337
HpyCH4V TGCA 4 cut(s) 209, 362, 456, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 517
HpyF3I CTNAG 2 cut(s) 429, 505
Hsp92II CATG 1 cut(s) 219
HspAI GCGC 1 cut(s) 187
KpnI GGTACC 1 cut(s) 326
Kzo9I GATC 3 cut(s) 133, 316, 559
LmnI GCTCC 4 cut(s) 117, 296, 421, 535
Lsp1109I GCAGC 2 cut(s) 153, 400
LweI GCATC 1 cut(s) 443
MaeIII GTNAC 1 cut(s) 403
MalI GATC 3 cut(s) 135, 318, 561
MboI GATC 3 cut(s) 133, 316, 559
MboII GAAGA 2 cut(s) 55, 278
MflI RGATCY 1 cut(s) 559
MhlI GDGCHC 2 cut(s) 466, 513
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 301
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 6 cut(s) 107, 249, 256, 307, 351, 549
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 516
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 50
MspR9I CCNGG 3 cut(s) 50, 230, 482
MvaI CCWGG 2 cut(s) 230, 482
MvnI CGCG 1 cut(s) 187
MwoI GCNNNNNNNGC 1 cut(s) 517
NciI CCSGG 1 cut(s) 50
NdeII GATC 3 cut(s) 133, 316, 559
NlaIII CATG 1 cut(s) 219
NlaIV GGNNCC 2 cut(s) 324, 537
NmuCI GTSAC 1 cut(s) 403
PfeI GAWTC 2 cut(s) 40, 425
PfoI TCCNGGA 1 cut(s) 480
PkrI GCNGC 2 cut(s) 168, 415
PsiI TTATAA 1 cut(s) 545
Psp124BI GAGCTC 1 cut(s) 513
Psp6I CCWGG 2 cut(s) 228, 480
PspEI GGTNACC 1 cut(s) 403
PspGI CCWGG 2 cut(s) 228, 480
PspN4I GGNNCC 2 cut(s) 324, 537
PstNI CAGNNNCTG 1 cut(s) 563
PsuI RGATCY 1 cut(s) 559
RsaI GTAC 3 cut(s) 148, 324, 332
RsaNI GTAC 3 cut(s) 147, 323, 331
SacI GAGCTC 1 cut(s) 513
SaqAI TTAA 1 cut(s) 516
SatI GCNGC 2 cut(s) 167, 414
Sau3AI GATC 3 cut(s) 133, 316, 559
ScrFI CCNGG 3 cut(s) 50, 230, 482
SduI GDGCHC 2 cut(s) 466, 513
SetI ASST 9 cut(s) 58, 114, 132, 154, 231, 241, 324, 415, 513
SfaNI GCATC 1 cut(s) 443
Sse9I AATT 1 cut(s) 301
SspI AATATT 1 cut(s) 549
SstI GAGCTC 1 cut(s) 513
StyD4I CCNGG 3 cut(s) 48, 228, 480
StyI CCWWGG 1 cut(s) 419
TaaI ACNGT 3 cut(s) 204, 247, 337
TasI AATT 1 cut(s) 301
TatI WGTACW 2 cut(s) 146, 330
TfiI GAWTC 2 cut(s) 40, 425
Tru1I TTAA 1 cut(s) 516
Tru9I TTAA 1 cut(s) 516
TscAI CASTG 2 cut(s) 13, 342
TseFI GTSAC 1 cut(s) 403
TseI GCWGC 2 cut(s) 166, 413
Tsp45I GTSAC 1 cut(s) 403
TspDTI ATGAA 2 cut(s) 182, 295
TspRI CASTG 2 cut(s) 13, 342
VneI GTGCAC 1 cut(s) 462
XapI RAATTY 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.