Prupe.7G195700_v2.0.a1
ERF Family

Cupin superfamily (DUF985)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0013260
Physical Location & Seq
Forward (+)
18526150 .. 18527897
1748 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G195700.1

Sequence Viewer

Length: 576 bp
ATGGCAACTGCATCACAGATTGTCGAGAAACTGAAACTGAATCCCCACCCAGAAGGTGGGTTTTATTTTGAAACTTTCAGAGACATCTCCATTGCCCTGCCCTTGTGCCAGCTTCCCCCAGATTACAAGGTTGAGCGCCCTGTGAGTTCTTCGATCTACTTCTTGCTGCCTTCCGGGGATGTGTCGCGCCTTCATCGTATACCAATGGCTGAAACCTGGCATTTTTATCTGGGAGAACCTATTACGATAGTGGAGTTGGATGACAAAGATGGGCAAGTCAAATTCACCTGCCTTGGACCCAATTTGATTGGAGAGGATCAGCAACCCCAGTACACGGTGCCTCCAAATGTATGGTTTGGTTCATTTCCAACAAAGGACTATAGCGTTTCACCAGATGGGGCATTGCTCAAAGCTGCTCCAAGGGATGCTGAGACTCACTACTCTCTTGTGGGATGCACTTGTGCACCTGCCTTTCAGTTCCAGGACTTCGAGCTGGCAAAGCGATCGGACCTTGTTTCTCGCTTTCCTAAATTCGAGCCTCTTATATCATTCCTTACATTCCCTGAAAAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_5

Protein Analysis

192

Amino Acids

21.49

Weight (kDa)

5.06

Isoelectric Point (pI)

47.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013260)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19130
fragaria_vesca FvH4_1g09020
malus_domestica MD02G1095400.v1.1
prunus_persica Prupe.7G195700_v2.0.a1
pyrus_communis pycom02g07550
rosa_chinensis RchiOBHm_Chr2g0095441
rosa_laevigata RLG00000016566
rosa_multiflora Rmu_co8132630.1_g000001 Rmu_co8397589.1_g000001 Rmu_sc0010847.1_g000003 Rmu_ssc0000183.1_g000046
rosa_roxburghii Rroxscaffold_2G00146370
rosa_rugosa Rorug02G0051100
rosa_samantha Rh2AG099100 Rh2BG100300 Rh2CG102500 Rh2DG100000
rosa_wichuraiana Rw2G007500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 296, 475
Acc36I ACCTGC 2 cut(s) 296, 475
AccB1I GGYRCC 1 cut(s) 337
AccB7I CCANNNNNTGG 1 cut(s) 56
AccI GTMKAC 1 cut(s) 199
AccII CGCG 1 cut(s) 187
AclWI GGATC 1 cut(s) 324
AcsI RAATTY 2 cut(s) 281, 530
AfaI GTAC 1 cut(s) 332
AfiI CCNNNNNNNGG 2 cut(s) 56, 334
AgsI TTSAA 1 cut(s) 71
AjnI CCWGG 2 cut(s) 215, 480
AluBI AGCT 3 cut(s) 112, 413, 493
AluI AGCT 3 cut(s) 112, 413, 493
Alw21I GWGCWC 1 cut(s) 466
Alw26I GTCTC 2 cut(s) 75, 425
Alw44I GTGCAC 1 cut(s) 462
AlwI GGATC 1 cut(s) 324
ApaLI GTGCAC 1 cut(s) 462
ApeKI GCWGC 2 cut(s) 166, 413
ApoI RAATTY 2 cut(s) 281, 530
AspLEI GCGC 2 cut(s) 138, 189
AspS9I GGNCC 2 cut(s) 296, 508
AsuC2I CCSGG 1 cut(s) 175
AsuHPI GGTGA 2 cut(s) 277, 381
AvaII GGWCC 2 cut(s) 296, 508
BaeGI GKGCMC 1 cut(s) 466
BanI GGYRCC 1 cut(s) 337
Bbv12I GWGCWC 1 cut(s) 466
BbvI GCAGC 2 cut(s) 153, 400
BccI CCATC 2 cut(s) 263, 389
BcgI CGANNNNNNTGC 2 cut(s) 486, 520
BciT130I CCWGG 2 cut(s) 217, 482
BcnI CCSGG 1 cut(s) 175
BcoDI GTCTC 2 cut(s) 75, 425
BfmI CTRYAG 1 cut(s) 379
BfoI RGCGCY 1 cut(s) 139
BfuAI ACCTGC 2 cut(s) 296, 475
BisI GCNGC 2 cut(s) 167, 414
BlsI GCNGC 2 cut(s) 168, 415
Bme1390I CCNGG 3 cut(s) 175, 217, 482
Bme18I GGWCC 2 cut(s) 296, 508
BmgT120I GGNCC 2 cut(s) 296, 508
BmiI GGNNCC 2 cut(s) 298, 339
BmrFI CCNGG 3 cut(s) 175, 217, 482
BmrI ACTGGG 1 cut(s) 322
BmsI GCATC 3 cut(s) 20, 415, 443
BmuI ACTGGG 1 cut(s) 322
BpuMI CCSGG 1 cut(s) 175
BsaJI CCNNGG 3 cut(s) 174, 292, 419
BsaXI ACNNNNNCTCC 2 cut(s) 325, 355
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 334
Bse1I ACTGG 1 cut(s) 328
Bse3DI GCAATG 2 cut(s) 90, 401
BseBI CCWGG 2 cut(s) 217, 482
BseDI CCNNGG 3 cut(s) 174, 292, 419
BseGI GGATG 4 cut(s) 184, 265, 430, 458
BseLI CCNNNNNNNGG 2 cut(s) 56, 334
BseMI GCAATG 2 cut(s) 90, 401
BseMII CTCAG 1 cut(s) 420
BseNI ACTGG 1 cut(s) 328
BseSI GKGCMC 1 cut(s) 466
BseXI GCAGC 2 cut(s) 153, 400
Bsh1236I CGCG 1 cut(s) 187
Bsh1285I CGRYCG 1 cut(s) 506
BshNI GGYRCC 1 cut(s) 337
BsiEI CGRYCG 1 cut(s) 506
BsiHKAI GWGCWC 1 cut(s) 466
BsiSI CCGG 1 cut(s) 174
BslI CCNNNNNNNGG 2 cut(s) 56, 334
BsmAI GTCTC 2 cut(s) 75, 425
Bsp1286I GDGCHC 1 cut(s) 466
Bsp143I GATC 3 cut(s) 153, 316, 503
BspCNI CTCAG 1 cut(s) 421
BspFNI CGCG 1 cut(s) 187
BspLI GGNNCC 2 cut(s) 298, 339
BspMI ACCTGC 2 cut(s) 296, 475
BspPI GGATC 1 cut(s) 324
BspT107I GGYRCC 1 cut(s) 337
BsrDI GCAATG 2 cut(s) 90, 401
BsrI ACTGG 1 cut(s) 328
BssECI CCNNGG 3 cut(s) 174, 292, 419
BssMI GATC 3 cut(s) 153, 316, 503
BssNAI GTATAC 1 cut(s) 200
BssT1I CCWWGG 2 cut(s) 292, 419
Bst1107I GTATAC 1 cut(s) 200
Bst2UI CCWGG 2 cut(s) 217, 482
Bst4CI ACNGT 1 cut(s) 337
BstC8I GCNNGC 2 cut(s) 110, 495
BstDEI CTNAG 1 cut(s) 429
BstF5I GGATG 4 cut(s) 184, 265, 430, 458
BstFNI CGCG 1 cut(s) 187
BstH2I RGCGCY 1 cut(s) 139
BstHHI GCGC 2 cut(s) 138, 189
BstKTI GATC 3 cut(s) 156, 319, 506
BstMAI GTCTC 2 cut(s) 75, 425
BstMBI GATC 3 cut(s) 153, 316, 503
BstMCI CGRYCG 1 cut(s) 506
BstMWI GCNNNNNNNGC 1 cut(s) 499
BstNI CCWGG 2 cut(s) 217, 482
BstSCI CCNGG 3 cut(s) 173, 215, 480
BstSFI CTRYAG 1 cut(s) 379
BstSLI GKGCMC 1 cut(s) 466
BstUI CGCG 1 cut(s) 187
BstV1I GCAGC 2 cut(s) 153, 400
BstXI CCANNNNNNTGG 1 cut(s) 351
BstZ17I GTATAC 1 cut(s) 200
BtsCI GGATG 4 cut(s) 184, 265, 430, 458
BveI ACCTGC 2 cut(s) 296, 475
Cac8I GCNNGC 2 cut(s) 110, 495
CfoI GCGC 2 cut(s) 138, 189
Cfr13I GGNCC 2 cut(s) 296, 508
Csp6I GTAC 1 cut(s) 331
CviAII CATG 1 cut(s) 573
CviJI RGCY 5 cut(s) 112, 209, 413, 493, 538
CviKI_1 RGCY 5 cut(s) 112, 209, 413, 493, 538
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 1 cut(s) 429
DpnI GATC 3 cut(s) 155, 318, 505
DpnII GATC 3 cut(s) 153, 316, 503
Eco130I CCWWGG 2 cut(s) 292, 419
Eco47I GGWCC 2 cut(s) 296, 508
EcoRII CCWGG 2 cut(s) 215, 480
EcoT14I CCWWGG 2 cut(s) 292, 419
ErhI CCWWGG 2 cut(s) 292, 419
FaeI CATG 1 cut(s) 576
FaiI YATR 5 cut(s) 200, 352, 381, 545, 574
FatI CATG 1 cut(s) 572
FblI GTMKAC 1 cut(s) 199
Fnu4HI GCNGC 2 cut(s) 167, 414
FokI GGATG 4 cut(s) 191, 272, 437, 465
Fsp4HI GCNGC 2 cut(s) 167, 414
GlaI GCGC 2 cut(s) 137, 188
GluI GCNGC 2 cut(s) 167, 414
HaeII RGCGCY 1 cut(s) 139
HapII CCGG 1 cut(s) 174
HhaI GCGC 2 cut(s) 138, 189
Hin1II CATG 1 cut(s) 576
Hin6I GCGC 2 cut(s) 136, 187
HinP1I GCGC 2 cut(s) 136, 187
HinfI GANTC 2 cut(s) 40, 433
HpaII CCGG 1 cut(s) 174
HphI GGTGA 2 cut(s) 277, 381
Hpy166II GTNNAC 3 cut(s) 200, 333, 464
Hpy188I TCNGA 2 cut(s) 80, 508
Hpy188III TCNNGA 1 cut(s) 25
Hpy8I GTNNAC 3 cut(s) 200, 333, 464
HpyAV CCTTC 3 cut(s) 47, 180, 200
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4V TGCA 3 cut(s) 11, 456, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 499
HpyF3I CTNAG 1 cut(s) 429
Hsp92II CATG 1 cut(s) 576
HspAI GCGC 2 cut(s) 136, 187
Kzo9I GATC 3 cut(s) 153, 316, 503
LmnI GCTCC 1 cut(s) 421
Lsp1109I GCAGC 2 cut(s) 153, 400
LweI GCATC 3 cut(s) 20, 415, 443
MalI GATC 3 cut(s) 155, 318, 505
MboI GATC 3 cut(s) 153, 316, 503
MboII GAAGA 1 cut(s) 141
MhlI GDGCHC 1 cut(s) 466
MluCI AATT 3 cut(s) 281, 301, 530
MlyI GAGTC 1 cut(s) 427
MmeI TCCRAC 2 cut(s) 237, 392
MnlI CCTC 3 cut(s) 307, 351, 549
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 3 cut(s) 175, 217, 482
MvaI CCWGG 2 cut(s) 217, 482
MvnI CGCG 1 cut(s) 187
MwoI GCNNNNNNNGC 1 cut(s) 499
NciI CCSGG 1 cut(s) 175
NdeII GATC 3 cut(s) 153, 316, 503
NlaIII CATG 1 cut(s) 576
NlaIV GGNNCC 2 cut(s) 298, 339
PaqCI CACCTGC 2 cut(s) 296, 475
PfeI GAWTC 1 cut(s) 40
PflMI CCANNNNNTGG 1 cut(s) 56
PfoI TCCNGGA 1 cut(s) 480
PkrI GCNGC 2 cut(s) 168, 415
Ple19I CGATCG 1 cut(s) 506
PleI GAGTC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 427
Psp6I CCWGG 2 cut(s) 215, 480
PspGI CCWGG 2 cut(s) 215, 480
PspN4I GGNNCC 2 cut(s) 298, 339
PspPI GGNCC 2 cut(s) 296, 508
PvuI CGATCG 1 cut(s) 506
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
SatI GCNGC 2 cut(s) 167, 414
Sau3AI GATC 3 cut(s) 153, 316, 503
Sau96I GGNCC 2 cut(s) 296, 508
SchI GAGTC 1 cut(s) 427
ScrFI CCNGG 3 cut(s) 175, 217, 482
SduI GDGCHC 1 cut(s) 466
SfaNI GCATC 3 cut(s) 20, 415, 443
SfcI CTRYAG 1 cut(s) 379
SinI GGWCC 2 cut(s) 296, 508
Sse9I AATT 3 cut(s) 281, 301, 530
StyD4I CCNGG 3 cut(s) 173, 215, 480
StyI CCWWGG 2 cut(s) 292, 419
TaaI ACNGT 1 cut(s) 337
TaqI TCGA 4 cut(s) 24, 152, 489, 534
TasI AATT 3 cut(s) 281, 301, 530
TatI WGTACW 1 cut(s) 330
TfiI GAWTC 1 cut(s) 40
TseI GCWGC 2 cut(s) 166, 413
TspDTI ATGAA 2 cut(s) 182, 351
Van91I CCANNNNNTGG 1 cut(s) 56
VneI GTGCAC 1 cut(s) 462
VpaK11BI GGWCC 2 cut(s) 296, 508
XapI RAATTY 2 cut(s) 281, 530
XcmI CCANNNNNNNNNTGG 1 cut(s) 53
XmiI GTMKAC 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.