Rh2BG100300
ERF Family

Cupin superfamily (DUF985)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0013260
Physical Location & Seq
Reverse (-)
8272208 .. 8276882
4675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG100300.1

Sequence Viewer

Length: 327 bp
ATGGAGTTGAATGAGGAAGATGGGAAAGTCAAACTAACAAACATTGGAGCAAATTTCATTGGAGAGGATCAGGTACCCCAGTACACAGTGCCTCCAAATGTTTGGTTTGGTGCATTTCCTACAAAGGACTTCAACATTTCACCAGATGGGGGTGTGACCAAAGCTGCTCCAAGGGATTCTGAGACCCACTACTCTCTCGTGGGATGCACTTGTGCACCAGCCTTTCAGTTCCAGGATTTTGAGTTGGCAAAACGCTCAGAGCTCATTAAGCACTTCCCTGATAGCGAGCCTCTTATAACATTGCTAACAGATCCTGAAAAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_5

Protein Analysis

108

Amino Acids

11.94

Weight (kDa)

4.54

Isoelectric Point (pI)

56.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_5 PF06172 4 - 83 2.5e-13 Cupin superfamily (DUF985)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013260)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19130
fragaria_vesca FvH4_1g09020
malus_domestica MD02G1095400.v1.1
prunus_persica Prupe.7G195700_v2.0.a1
pyrus_communis pycom02g07550
rosa_chinensis RchiOBHm_Chr2g0095441
rosa_laevigata RLG00000016566
rosa_multiflora Rmu_co8132630.1_g000001 Rmu_co8397589.1_g000001 Rmu_sc0010847.1_g000003 Rmu_ssc0000183.1_g000046
rosa_roxburghii Rroxscaffold_2G00146370
rosa_rugosa Rorug02G0051100
rosa_samantha Rh2AG099100 Rh2BG100300 Rh2CG102500 Rh2DG100000
rosa_wichuraiana Rw2G007500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 296
Acc65I GGTACC 1 cut(s) 73
AccB1I GGYRCC 1 cut(s) 73
AclWI GGATC 2 cut(s) 75, 305
AcsI RAATTY 1 cut(s) 52
AfaI GTAC 2 cut(s) 75, 83
AfiI CCNNNNNNNGG 1 cut(s) 149
AgsI TTSAA 2 cut(s) 10, 133
AjnI CCWGG 1 cut(s) 231
AluBI AGCT 2 cut(s) 164, 262
AluI AGCT 2 cut(s) 164, 262
Alw21I GWGCWC 2 cut(s) 217, 264
Alw26I GTCTC 1 cut(s) 176
Alw44I GTGCAC 1 cut(s) 213
AlwI GGATC 2 cut(s) 75, 305
AlwNI CAGNNNCTG 1 cut(s) 314
ApaLI GTGCAC 1 cut(s) 213
ApeKI GCWGC 1 cut(s) 164
ApoI RAATTY 1 cut(s) 52
Asp718I GGTACC 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 132
BaeGI GKGCMC 1 cut(s) 217
BaeI ACNNNNGTAYC 2 cut(s) 65, 98
BanI GGYRCC 1 cut(s) 73
BanII GRGCYC 1 cut(s) 264
BauI CACGAG 1 cut(s) 197
Bbv12I GWGCWC 2 cut(s) 217, 264
BbvI GCAGC 1 cut(s) 151
BccI CCATC 2 cut(s) 14, 140
BciT130I CCWGG 1 cut(s) 233
BcoDI GTCTC 1 cut(s) 176
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
Bme1390I CCNGG 1 cut(s) 233
BmiI GGNNCC 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 233
BmrI ACTGGG 1 cut(s) 73
BmsI GCATC 1 cut(s) 194
BmuI ACTGGG 1 cut(s) 73
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 170
BsaXI ACNNNNNCTCC 2 cut(s) 76, 106
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse1I ACTGG 1 cut(s) 79
Bse3DI GCAATG 1 cut(s) 299
BseBI CCWGG 1 cut(s) 233
BseDI CCNNGG 1 cut(s) 170
BseGI GGATG 1 cut(s) 209
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMI GCAATG 1 cut(s) 299
BseMII CTCAG 2 cut(s) 171, 270
BseNI ACTGG 1 cut(s) 79
BseSI GKGCMC 1 cut(s) 217
BseXI GCAGC 1 cut(s) 151
BshNI GGYRCC 1 cut(s) 73
BsiHKAI GWGCWC 2 cut(s) 217, 264
BslI CCNNNNNNNGG 1 cut(s) 149
BsmAI GTCTC 1 cut(s) 176
Bso31I GGTCTC 1 cut(s) 176
Bsp1286I GDGCHC 2 cut(s) 217, 264
Bsp143I GATC 2 cut(s) 67, 310
BspCNI CTCAG 2 cut(s) 172, 269
BspLI GGNNCC 1 cut(s) 75
BspPI GGATC 2 cut(s) 75, 305
BspT107I GGYRCC 1 cut(s) 73
BspTNI GGTCTC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 299
BsrI ACTGG 1 cut(s) 79
BssECI CCNNGG 1 cut(s) 170
BssMI GATC 2 cut(s) 67, 310
BssSI CACGAG 1 cut(s) 197
BssT1I CCWWGG 1 cut(s) 170
Bst2BI CACGAG 1 cut(s) 197
Bst2UI CCWGG 1 cut(s) 233
Bst4CI ACNGT 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 2 cut(s) 180, 256
BstF5I GGATG 1 cut(s) 209
BstKTI GATC 2 cut(s) 70, 313
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 2 cut(s) 67, 310
BstMWI GCNNNNNNNGC 1 cut(s) 268
BstNI CCWGG 1 cut(s) 233
BstSCI CCNGG 1 cut(s) 231
BstSLI GKGCMC 1 cut(s) 217
BstV1I GCAGC 1 cut(s) 151
BstX2I RGATCY 1 cut(s) 310
BstXI CCANNNNNNTGG 1 cut(s) 102
BstYI RGATCY 1 cut(s) 310
BtsCI GGATG 1 cut(s) 209
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 1 cut(s) 287
CaiI CAGNNNCTG 1 cut(s) 314
Csp6I GTAC 2 cut(s) 74, 82
CviJI RGCY 4 cut(s) 164, 221, 262, 289
CviKI_1 RGCY 4 cut(s) 164, 221, 262, 289
CviQI GTAC 2 cut(s) 74, 82
DdeI CTNAG 2 cut(s) 180, 256
DpnI GATC 2 cut(s) 69, 312
DpnII GATC 2 cut(s) 67, 310
Ecl136II GAGCTC 1 cut(s) 262
Eco130I CCWWGG 1 cut(s) 170
Eco24I GRGCYC 1 cut(s) 264
Eco31I GGTCTC 1 cut(s) 176
Eco53kI GAGCTC 1 cut(s) 262
EcoICRI GAGCTC 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 231
EcoT14I CCWWGG 1 cut(s) 170
EcoT38I GRGCYC 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 170
FaiI YATR 2 cut(s) 296, 325
Fnu4HI GCNGC 1 cut(s) 165
FokI GGATG 1 cut(s) 216
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 1 cut(s) 165
GluI GCNGC 1 cut(s) 165
HinfI GANTC 1 cut(s) 176
HphI GGTGA 1 cut(s) 132
Hpy166II GTNNAC 2 cut(s) 84, 215
Hpy188I TCNGA 2 cut(s) 181, 259
Hpy188III TCNNGA 1 cut(s) 314
Hpy8I GTNNAC 2 cut(s) 84, 215
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4V TGCA 3 cut(s) 113, 207, 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 268
HpyF3I CTNAG 2 cut(s) 180, 256
KpnI GGTACC 1 cut(s) 77
Kzo9I GATC 2 cut(s) 67, 310
LmnI GCTCC 2 cut(s) 47, 172
LpnPI CCDG 7 cut(s) 56, 92, 156, 218, 231, 245, 291
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 1 cut(s) 194
MaeIII GTNAC 1 cut(s) 154
MalI GATC 2 cut(s) 69, 312
MboI GATC 2 cut(s) 67, 310
MboII GAAGA 1 cut(s) 29
MflI RGATCY 1 cut(s) 310
MhlI GDGCHC 2 cut(s) 217, 264
MluCI AATT 1 cut(s) 52
MnlI CCTC 4 cut(s) 7, 58, 102, 300
MseI TTAA 1 cut(s) 267
MspR9I CCNGG 1 cut(s) 233
MvaI CCWGG 1 cut(s) 233
MwoI GCNNNNNNNGC 1 cut(s) 268
NdeII GATC 2 cut(s) 67, 310
NlaIV GGNNCC 1 cut(s) 75
NmuCI GTSAC 1 cut(s) 154
PfeI GAWTC 1 cut(s) 176
PfoI TCCNGGA 1 cut(s) 231
PkrI GCNGC 1 cut(s) 166
PsiI TTATAA 1 cut(s) 296
Psp124BI GAGCTC 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 231
PspGI CCWGG 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 75
PstNI CAGNNNCTG 1 cut(s) 314
PsuI RGATCY 1 cut(s) 310
RsaI GTAC 2 cut(s) 75, 83
RsaNI GTAC 2 cut(s) 74, 82
SacI GAGCTC 1 cut(s) 264
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 1 cut(s) 165
Sau3AI GATC 2 cut(s) 67, 310
ScrFI CCNGG 1 cut(s) 233
SduI GDGCHC 2 cut(s) 217, 264
SetI ASST 3 cut(s) 75, 166, 264
SfaNI GCATC 1 cut(s) 194
Sse9I AATT 1 cut(s) 52
SstI GAGCTC 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 231
StyI CCWWGG 1 cut(s) 170
TaaI ACNGT 1 cut(s) 88
TasI AATT 1 cut(s) 52
TatI WGTACW 1 cut(s) 81
TfiI GAWTC 1 cut(s) 176
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TscAI CASTG 1 cut(s) 93
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 1 cut(s) 46
TspRI CASTG 1 cut(s) 93
VneI GTGCAC 1 cut(s) 213
XapI RAATTY 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.