FvH4_1g09020
ERF Family

Cupin superfamily (DUF985)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013260
Physical Location & Seq
Reverse (-)
4769719 .. 4771657
1939 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g09020.t1

Sequence Viewer

Length: 672 bp
ATGAAACACTCCAGTTTCAATGCTTTTCACCCACCAAAACACACAAAGGAAATCTTCGGAACAAGACAAAGCAGCAGGTCACAAGACATCATGGGAGCTCCCACTGCCGCCCAGATTGTGGAGAAACTGAAACTGAATCCACACCAAGAAGGTGGTTTCTTCTCTGAAACATTCAGAGACACTTCTATTGTCCTACCTTTGTGTCAGCTCCCGCCAGACTACAAGGTTGATCGTCCTGTGAGTACAGCTATTTACTTCTTGCTGCCTACTGGGGACGTTTCACGCCTTCATCGCATACCGTGTGCAGAGACATGGCATTTCTACCTGGGAGAACCTCTTACGGTAGTGGAGTTGAATGAGGTAGATGGGAAAGTCAAACTGACAAACCTTGGACCTAATTTCATTGACGAGGATCAGCAACCCCAGTACACAGTCCCTCCAAATGTTTGGTTTGGTGCATTTCCTACAAAGGACTACAACATTTCACCAGATGGGGCACTGACCAAAGCTGCTCCAAGGGATTCTGAGACCCACTACTCTCTGGTGGGATGCACTTGTGCACCAGCATTTCAGTTCCAGGATTTTGAGTTGGCAAAACGCTCAGAGATCATTAAGCAGTTCCCTGATAGCGAGCCTCTTATAACGTTGCTTACAGATTCTGAAAAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_5

Protein Analysis

224

Amino Acids

25.03

Weight (kDa)

5.48

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_5 PF06172 38 - 198 7.6e-43 Cupin superfamily (DUF985)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013260)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19130
fragaria_vesca FvH4_1g09020
malus_domestica MD02G1095400.v1.1
prunus_persica Prupe.7G195700_v2.0.a1
pyrus_communis pycom02g07550
rosa_chinensis RchiOBHm_Chr2g0095441
rosa_laevigata RLG00000016566
rosa_multiflora Rmu_co8132630.1_g000001 Rmu_co8397589.1_g000001 Rmu_sc0010847.1_g000003 Rmu_ssc0000183.1_g000046
rosa_roxburghii Rroxscaffold_2G00146370
rosa_rugosa Rorug02G0051100
rosa_samantha Rh2AG099100 Rh2BG100300 Rh2CG102500 Rh2DG100000
rosa_wichuraiana Rw2G007500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 641
Acc36I ACCTGC 1 cut(s) 66
AccB7I CCANNNNNTGG 1 cut(s) 118
AciI CCGC 2 cut(s) 108, 212
AclI AACGTT 1 cut(s) 644
AclWI GGATC 1 cut(s) 420
AfaI GTAC 2 cut(s) 244, 428
AfiI CCNNNNNNNGG 1 cut(s) 118
AgsI TTSAA 2 cut(s) 19, 355
AjnI CCWGG 2 cut(s) 324, 576
AluBI AGCT 4 cut(s) 98, 208, 248, 509
AluI AGCT 4 cut(s) 98, 208, 248, 509
Alw21I GWGCWC 2 cut(s) 100, 562
Alw26I GTCTC 3 cut(s) 171, 302, 521
Alw44I GTGCAC 1 cut(s) 558
AlwI GGATC 1 cut(s) 420
AlwNI CAGNNNCTG 1 cut(s) 659
ApaLI GTGCAC 1 cut(s) 558
ApeKI GCWGC 3 cut(s) 72, 262, 509
AspS9I GGNCC 1 cut(s) 392
AsuHPI GGTGA 2 cut(s) 20, 477
AvaII GGWCC 1 cut(s) 392
BaeGI GKGCMC 2 cut(s) 499, 562
BanII GRGCYC 1 cut(s) 100
Bbv12I GWGCWC 2 cut(s) 100, 562
BbvI GCAGC 3 cut(s) 84, 249, 496
BccI CCATC 2 cut(s) 359, 485
BciT130I CCWGG 2 cut(s) 326, 578
BcoDI GTCTC 3 cut(s) 171, 302, 521
BfuAI ACCTGC 1 cut(s) 66
BisI GCNGC 4 cut(s) 73, 108, 263, 510
BlsI GCNGC 4 cut(s) 74, 109, 264, 511
Bme1390I CCNGG 2 cut(s) 326, 578
Bme18I GGWCC 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 392
BmrFI CCNGG 2 cut(s) 326, 578
BmrI ACTGGG 2 cut(s) 279, 418
BmsI GCATC 1 cut(s) 539
BmuI ACTGGG 2 cut(s) 279, 418
BsaI GGTCTC 1 cut(s) 521
BsaJI CCNNGG 3 cut(s) 325, 388, 515
BsaXI ACNNNNNCTCC 2 cut(s) 421, 451
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse1I ACTGG 3 cut(s) 12, 274, 424
BseBI CCWGG 2 cut(s) 326, 578
BseDI CCNNGG 3 cut(s) 325, 388, 515
BseGI GGATG 1 cut(s) 554
BseLI CCNNNNNNNGG 1 cut(s) 118
BseMII CTCAG 2 cut(s) 516, 615
BseNI ACTGG 3 cut(s) 12, 274, 424
BseSI GKGCMC 2 cut(s) 499, 562
BseXI GCAGC 3 cut(s) 84, 249, 496
BsgI GTGCAG 1 cut(s) 324
BsiHKAI GWGCWC 2 cut(s) 100, 562
BslFI GGGAC 2 cut(s) 287, 419
BslI CCNNNNNNNGG 1 cut(s) 118
BsmAI GTCTC 3 cut(s) 171, 302, 521
BsmFI GGGAC 2 cut(s) 287, 419
Bso31I GGTCTC 1 cut(s) 521
Bsp1286I GDGCHC 3 cut(s) 100, 499, 562
Bsp143I GATC 3 cut(s) 229, 412, 606
BspACI CCGC 2 cut(s) 108, 212
BspCNI CTCAG 2 cut(s) 517, 614
BspMI ACCTGC 1 cut(s) 66
BspPI GGATC 1 cut(s) 420
BspTNI GGTCTC 1 cut(s) 521
BsrI ACTGG 3 cut(s) 12, 274, 424
BssECI CCNNGG 3 cut(s) 325, 388, 515
BssMI GATC 3 cut(s) 229, 412, 606
BssT1I CCWWGG 2 cut(s) 388, 515
Bst2UI CCWGG 2 cut(s) 326, 578
Bst4CI ACNGT 3 cut(s) 300, 343, 433
BstC8I GCNNGC 1 cut(s) 632
BstDEI CTNAG 2 cut(s) 525, 601
BstF5I GGATG 1 cut(s) 554
BstKTI GATC 3 cut(s) 232, 415, 609
BstMAI GTCTC 3 cut(s) 171, 302, 521
BstMBI GATC 3 cut(s) 229, 412, 606
BstMWI GCNNNNNNNGC 2 cut(s) 104, 291
BstNI CCWGG 2 cut(s) 326, 578
BstSCI CCNGG 2 cut(s) 324, 576
BstSLI GKGCMC 2 cut(s) 499, 562
BstV1I GCAGC 3 cut(s) 84, 249, 496
BstXI CCANNNNNNTGG 2 cut(s) 152, 447
BtgZI GCGATG 1 cut(s) 275
BtsCI GGATG 1 cut(s) 554
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 2 cut(s) 102, 497
BveI ACCTGC 1 cut(s) 66
Cac8I GCNNGC 1 cut(s) 632
CaiI CAGNNNCTG 1 cut(s) 659
Cfr13I GGNCC 1 cut(s) 392
Csp6I GTAC 2 cut(s) 243, 427
CviAII CATG 2 cut(s) 91, 312
CviJI RGCY 5 cut(s) 98, 208, 248, 509, 634
CviKI_1 RGCY 5 cut(s) 98, 208, 248, 509, 634
CviQI GTAC 2 cut(s) 243, 427
DdeI CTNAG 2 cut(s) 525, 601
DpnI GATC 3 cut(s) 231, 414, 608
DpnII GATC 3 cut(s) 229, 412, 606
Ecl136II GAGCTC 1 cut(s) 98
Eco130I CCWWGG 2 cut(s) 388, 515
Eco24I GRGCYC 1 cut(s) 100
Eco31I GGTCTC 1 cut(s) 521
Eco47I GGWCC 1 cut(s) 392
Eco53kI GAGCTC 1 cut(s) 98
EcoICRI GAGCTC 1 cut(s) 98
EcoRII CCWGG 2 cut(s) 324, 576
EcoT14I CCWWGG 2 cut(s) 388, 515
EcoT38I GRGCYC 1 cut(s) 100
ErhI CCWWGG 2 cut(s) 388, 515
FaeI CATG 2 cut(s) 94, 315
FaiI YATR 5 cut(s) 92, 296, 313, 641, 670
FalI AAGNNNNNCTT 2 cut(s) 38, 70
FaqI GGGAC 2 cut(s) 287, 419
FatI CATG 2 cut(s) 90, 311
FauI CCCGC 1 cut(s) 219
Fnu4HI GCNGC 4 cut(s) 73, 108, 263, 510
FokI GGATG 1 cut(s) 561
FriOI GRGCYC 1 cut(s) 100
Fsp4HI GCNGC 4 cut(s) 73, 108, 263, 510
GluI GCNGC 4 cut(s) 73, 108, 263, 510
Hin1II CATG 2 cut(s) 94, 315
HinfI GANTC 3 cut(s) 136, 521, 656
HphI GGTGA 2 cut(s) 20, 477
Hpy166II GTNNAC 2 cut(s) 429, 560
Hpy188I TCNGA 6 cut(s) 59, 166, 176, 526, 604, 661
Hpy8I GTNNAC 2 cut(s) 429, 560
HpyAV CCTTC 2 cut(s) 143, 296
HpyCH4III ACNGT 3 cut(s) 300, 343, 433
HpyCH4IV ACGT 2 cut(s) 276, 644
HpyCH4V TGCA 4 cut(s) 305, 458, 552, 560
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 291
HpyF3I CTNAG 2 cut(s) 525, 601
HpySE526I ACGT 2 cut(s) 276, 644
Hsp92II CATG 2 cut(s) 94, 315
Kzo9I GATC 3 cut(s) 229, 412, 606
LmnI GCTCC 4 cut(s) 95, 103, 213, 517
Lsp1109I GCAGC 3 cut(s) 84, 249, 496
LweI GCATC 1 cut(s) 539
MaeII ACGT 2 cut(s) 276, 644
MaeIII GTNAC 1 cut(s) 78
MalI GATC 3 cut(s) 231, 414, 608
MboI GATC 3 cut(s) 229, 412, 606
MboII GAAGA 2 cut(s) 46, 151
MhlI GDGCHC 3 cut(s) 100, 499, 562
MluCI AATT 1 cut(s) 397
MnlI CCTC 5 cut(s) 345, 352, 403, 447, 645
MseI TTAA 1 cut(s) 612
MspR9I CCNGG 2 cut(s) 326, 578
MvaI CCWGG 2 cut(s) 326, 578
MwoI GCNNNNNNNGC 2 cut(s) 104, 291
NdeII GATC 3 cut(s) 229, 412, 606
NlaIII CATG 2 cut(s) 94, 315
NmuCI GTSAC 1 cut(s) 78
PfeI GAWTC 3 cut(s) 136, 521, 656
PflMI CCANNNNNTGG 1 cut(s) 118
PfoI TCCNGGA 1 cut(s) 576
PkrI GCNGC 4 cut(s) 74, 109, 264, 511
PsiI TTATAA 1 cut(s) 641
Psp124BI GAGCTC 1 cut(s) 100
Psp1406I AACGTT 1 cut(s) 644
Psp6I CCWGG 2 cut(s) 324, 576
PspGI CCWGG 2 cut(s) 324, 576
PspPI GGNCC 1 cut(s) 392
PstNI CAGNNNCTG 1 cut(s) 659
RsaI GTAC 2 cut(s) 244, 428
RsaNI GTAC 2 cut(s) 243, 427
SacI GAGCTC 1 cut(s) 100
SaqAI TTAA 1 cut(s) 612
SatI GCNGC 4 cut(s) 73, 108, 263, 510
Sau3AI GATC 3 cut(s) 229, 412, 606
Sau96I GGNCC 1 cut(s) 392
ScrFI CCNGG 2 cut(s) 326, 578
SduI GDGCHC 3 cut(s) 100, 499, 562
SfaNI GCATC 1 cut(s) 539
SinI GGWCC 1 cut(s) 392
Sse9I AATT 1 cut(s) 397
SsiI CCGC 2 cut(s) 108, 212
SstI GAGCTC 1 cut(s) 100
StyD4I CCNGG 2 cut(s) 324, 576
StyI CCWWGG 2 cut(s) 388, 515
TaaI ACNGT 3 cut(s) 300, 343, 433
TaiI ACGT 2 cut(s) 279, 647
TasI AATT 1 cut(s) 397
TatI WGTACW 2 cut(s) 242, 426
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 3 cut(s) 136, 521, 656
Tru1I TTAA 1 cut(s) 612
Tru9I TTAA 1 cut(s) 612
TscAI CASTG 2 cut(s) 109, 504
TseFI GTSAC 1 cut(s) 78
TseI GCWGC 3 cut(s) 72, 262, 509
Tsp45I GTSAC 1 cut(s) 78
TspDTI ATGAA 3 cut(s) 17, 278, 391
TspRI CASTG 2 cut(s) 109, 504
Van91I CCANNNNNTGG 1 cut(s) 118
VneI GTGCAC 1 cut(s) 558
VpaK11BI GGWCC 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.