Rmu_co8397589.1_g000001
ERF Family

Cupin superfamily (DUF985)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8397589.1
OG0013260
Physical Location & Seq
Forward (+)
1 .. 1155
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8397589.1_g000001.1.cds

Sequence Viewer

Length: 368 bp
cgagacatgcgtggccagagaaggaaagcttaaacgttttcacctgccaaatagacaaagagatcgtccgaacaagaccagcagcagatcacagagacatggccactgccacccagattgttgagaaactgaaactgaatccacacccggaaggtggtttcttctctgaaactttcagagacacttccattctcctccccttgtgtcagctcccaccagactacaaggttgatcgccctgtgagtacagctatttacttcttgctgccaactggggatgtttcgcgccttcatcggataccgtgtgcagaaacatggcatttctacctgggagaacctcttacggtacgctccaatcatggtttataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_5

Protein Analysis

121

Amino Acids

13.87

Weight (kDa)

6.64

Isoelectric Point (pI)

31.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013260)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19130
fragaria_vesca FvH4_1g09020
malus_domestica MD02G1095400.v1.1
prunus_persica Prupe.7G195700_v2.0.a1
pyrus_communis pycom02g07550
rosa_chinensis RchiOBHm_Chr2g0095441
rosa_laevigata RLG00000016566
rosa_multiflora Rmu_co8132630.1_g000001 Rmu_co8397589.1_g000001 Rmu_sc0010847.1_g000003 Rmu_ssc0000183.1_g000046
rosa_roxburghii Rroxscaffold_2G00146370
rosa_rugosa Rorug02G0051100
rosa_samantha Rh2AG099100 Rh2BG100300 Rh2CG102500 Rh2DG100000
rosa_wichuraiana Rw2G007500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
AarI CACCTGC 1 cut(s) 52
Acc36I ACCTGC 1 cut(s) 52
AccII CGCG 1 cut(s) 285
AclI AACGTT 1 cut(s) 35
AcoI YGGCCR 2 cut(s) 13, 101
AfaI GTAC 2 cut(s) 246, 347
AfiI CCNNNNNNNGG 1 cut(s) 154
AjnI CCWGG 1 cut(s) 326
AluBI AGCT 3 cut(s) 29, 210, 250
AluI AGCT 3 cut(s) 29, 210, 250
Alw26I GTCTC 2 cut(s) 89, 173
AoxI GGCC 2 cut(s) 13, 101
ApeKI GCWGC 2 cut(s) 82, 264
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
AspLEI GCGC 1 cut(s) 287
AsuC2I CCSGG 1 cut(s) 148
AsuHPI GGTGA 1 cut(s) 33
BalI TGGCCA 2 cut(s) 15, 103
BbvI GCAGC 2 cut(s) 94, 251
BciT130I CCWGG 1 cut(s) 328
BciVI GTATCC 1 cut(s) 290
BcnI CCSGG 1 cut(s) 148
BcoDI GTCTC 2 cut(s) 89, 173
BfuAI ACCTGC 1 cut(s) 52
BfuI GTATCC 1 cut(s) 290
BisI GCNGC 2 cut(s) 83, 265
BlsI GCNGC 2 cut(s) 84, 266
Bme1390I CCNGG 2 cut(s) 148, 328
BmrFI CCNGG 2 cut(s) 148, 328
BmrI ACTGGG 1 cut(s) 281
BmuI ACTGGG 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 148
BsaJI CCNNGG 1 cut(s) 327
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse1I ACTGG 1 cut(s) 276
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 1 cut(s) 327
BseGI GGATG 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 154
BseNI ACTGG 1 cut(s) 276
BseRI GAGGAG 1 cut(s) 184
BseXI GCAGC 2 cut(s) 94, 251
BsgI GTGCAG 1 cut(s) 326
Bsh1236I CGCG 1 cut(s) 285
BshFI GGCC 2 cut(s) 15, 103
BsiSI CCGG 1 cut(s) 148
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 2 cut(s) 89, 173
BsnI GGCC 2 cut(s) 15, 103
Bsp143I GATC 3 cut(s) 62, 87, 231
BspANI GGCC 2 cut(s) 15, 103
BspFNI CGCG 1 cut(s) 285
BspMI ACCTGC 1 cut(s) 52
BsrI ACTGG 1 cut(s) 276
BssECI CCNNGG 1 cut(s) 327
BssMI GATC 3 cut(s) 62, 87, 231
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 2 cut(s) 302, 345
BstF5I GGATG 1 cut(s) 282
BstFNI CGCG 1 cut(s) 285
BstHHI GCGC 1 cut(s) 287
BstKTI GATC 3 cut(s) 65, 90, 234
BstMAI GTCTC 2 cut(s) 89, 173
BstMBI GATC 3 cut(s) 62, 87, 231
BstNI CCWGG 1 cut(s) 328
BstNSI RCATGY 1 cut(s) 10
BstSCI CCNGG 2 cut(s) 146, 326
BstUI CGCG 1 cut(s) 285
BstV1I GCAGC 2 cut(s) 94, 251
BsuI GTATCC 1 cut(s) 290
BsuRI GGCC 2 cut(s) 15, 103
BtsCI GGATG 1 cut(s) 282
BtsI GCAGTG 1 cut(s) 104
BtsIMutI CAGTG 1 cut(s) 104
BveI ACCTGC 1 cut(s) 52
CfoI GCGC 1 cut(s) 287
Csp6I GTAC 2 cut(s) 245, 346
CspCI CAANNNNNGTGG 2 cut(s) 99, 134
CviAII CATG 4 cut(s) 7, 99, 314, 358
CviJI RGCY 5 cut(s) 15, 29, 103, 210, 250
CviKI_1 RGCY 5 cut(s) 15, 29, 103, 210, 250
CviQI GTAC 2 cut(s) 245, 346
DpnI GATC 3 cut(s) 64, 89, 233
DpnII GATC 3 cut(s) 62, 87, 231
EaeI YGGCCR 2 cut(s) 13, 101
EcoRII CCWGG 1 cut(s) 326
FaeI CATG 4 cut(s) 10, 102, 317, 361
FaiI YATR 5 cut(s) 8, 100, 315, 359, 366
FalI AAGNNNNNCTT 2 cut(s) 13, 45
FatI CATG 4 cut(s) 6, 98, 313, 357
Fnu4HI GCNGC 2 cut(s) 83, 265
FokI GGATG 1 cut(s) 289
Fsp4HI GCNGC 2 cut(s) 83, 265
GlaI GCGC 1 cut(s) 286
GluI GCNGC 2 cut(s) 83, 265
HaeIII GGCC 2 cut(s) 15, 103
HapII CCGG 1 cut(s) 148
HhaI GCGC 1 cut(s) 287
Hin1II CATG 4 cut(s) 10, 102, 317, 361
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HindIII AAGCTT 1 cut(s) 27
HinfI GANTC 1 cut(s) 138
HpaII CCGG 1 cut(s) 148
HphI GGTGA 1 cut(s) 33
Hpy188I TCNGA 4 cut(s) 70, 168, 178, 296
HpyAV CCTTC 3 cut(s) 15, 145, 298
HpyCH4III ACNGT 2 cut(s) 302, 345
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 1 cut(s) 307
HpySE526I ACGT 1 cut(s) 35
Hsp92II CATG 4 cut(s) 10, 102, 317, 361
HspAI GCGC 1 cut(s) 285
Kzo9I GATC 3 cut(s) 62, 87, 231
LmnI GCTCC 2 cut(s) 215, 355
Lsp1109I GCAGC 2 cut(s) 94, 251
MaeII ACGT 1 cut(s) 35
MalI GATC 3 cut(s) 64, 89, 233
MboI GATC 3 cut(s) 62, 87, 231
MboII GAAGA 1 cut(s) 153
MlsI TGGCCA 2 cut(s) 15, 103
MluNI TGGCCA 2 cut(s) 15, 103
MnlI CCTC 2 cut(s) 205, 347
Mox20I TGGCCA 2 cut(s) 15, 103
MscI TGGCCA 2 cut(s) 15, 103
MseI TTAA 1 cut(s) 31
Msp20I TGGCCA 2 cut(s) 15, 103
MspI CCGG 1 cut(s) 148
MspR9I CCNGG 2 cut(s) 148, 328
MvaI CCWGG 1 cut(s) 328
MvnI CGCG 1 cut(s) 285
NciI CCSGG 1 cut(s) 148
NdeII GATC 3 cut(s) 62, 87, 231
NlaIII CATG 4 cut(s) 10, 102, 317, 361
NspI RCATGY 1 cut(s) 10
PaqCI CACCTGC 1 cut(s) 52
PfeI GAWTC 1 cut(s) 138
PkrI GCNGC 2 cut(s) 84, 266
PsiI TTATAA 1 cut(s) 366
Psp1406I AACGTT 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 326
PspGI CCWGG 1 cut(s) 326
RsaI GTAC 2 cut(s) 246, 347
RsaNI GTAC 2 cut(s) 245, 346
SaqAI TTAA 1 cut(s) 31
SatI GCNGC 2 cut(s) 83, 265
Sau3AI GATC 3 cut(s) 62, 87, 231
ScrFI CCNGG 2 cut(s) 148, 328
SetI ASST 9 cut(s) 31, 38, 46, 156, 212, 230, 252, 329, 339
StyD4I CCNGG 2 cut(s) 146, 326
TaaI ACNGT 2 cut(s) 302, 345
TaiI ACGT 1 cut(s) 38
TatI WGTACW 1 cut(s) 244
TfiI GAWTC 1 cut(s) 138
Tru1I TTAA 1 cut(s) 31
Tru9I TTAA 1 cut(s) 31
TscAI CASTG 1 cut(s) 111
TseI GCWGC 2 cut(s) 82, 264
TspDTI ATGAA 1 cut(s) 280
TspRI CASTG 1 cut(s) 111
XceI RCATGY 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.