Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003171

Physical Location & Seq

Genomic Coordinates Reverse (-)

6799969 .. 6802906

Gene Structure 2938 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G19660.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCCCAGACAATTGGGTGTCTCTGCTTTACTTGTCAACTGCTCTGTTTCGAAAACTAGGAGTCTCAGAAAACAATTCTGGGGTAACCAGACCAAAAATGACAAGTCTCAGGCTGCTACAGTGAATCTTCGTCTGCATCTTCGGAGGTATAAGAGTATCAAATGTCTTTTCAGCTCGCACTCTGATGGTACCGGAAGCACAGCAGAGAATTTCAACGAGAACGATGAGGATTATGTCAAGTCTAGTGTATTGGAAGCTGTTGAGGTAAAAAGTGGACCAGATGGTTTCATGGTGAAGATGAAGGATGGGAGGCAACTTCGATGTGTCCACAATAATCCTCAAGGAGGGAATCTTCCAAATTATGCTCCACATTCTGCAATTGTGCTGAAAATGGAAGATGGAACTGGTCTTCTTCTCCCCATTATCGTCTTGGAGATGCCTAGTGTGTTACTTATGGCAGCAATGACAAATGTTCAAATAGCAAGGCCCACTATGTATCAAGTGGTGAAGGACATGGTAGACAAAATGGGTTATGAGGTTAGGCTTGTTAGAGTTACCACAAGAGTTCACGAGGCATATTTCGCAGAGTTATACCTTTCAAAGGTGGGGGATAAGTCGGATTGTGTCAGCTTCGATCTTCGTCCTTCTGATGCAATTAATATAGCTGTTAGATGCAAGGTACCTATTCAAGTCAACAAGTATCTAGCTTATAGTGATGGAATGAGAGTCATCGATTCCGGAAAGCTATCAAAGCAAACACCTGCTTCTGATGGTTTATTGTTTACTGAACTAGACCGGCCAAATGGTCAGCCTTGTTTTGATACAAAAGAGTTCGATCTAGTAAGGAACATGATGCAAGCTGTTGATGAAGAACGGTATGATGAAGCCGCTGAGTGGAGAGACAAGCTTGGCAAGTTTCAGGCAAAACGCAAATTAAGGAAATACACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043207 GO:0043565 GO:0044237 GO:0044238 GO:0046483 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0098542 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNase-RNase UVR

Protein Analysis

329

Amino Acids

37.05

Weight (kDa)

9.18

Isoelectric Point (pI)

35.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BFN_dom	PF02577	140 - 252	4.6e-21	Bifunctional nuclease domain
UVR	PF02151	293 - 321	9.7e-06	UvrB/uvrC motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19660 AT1G19660 AT1G19660 AT1G75380 AT1G75380 AT1G75380 AT1G75380
fragaria_vesca	FvH4_2g39410 FvH4_2g39410 FvH4_2g39410
malus_domestica	MD08G1026400.v1.1 MD15G1023200.v1.1
prunus_persica	Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0301571
rosa_laevigata	RLG00000009590 RLG00000011243
rosa_multiflora	Rmu_ssc0000452.1_g000006
rosa_roxburghii	Rroxscaffold_7G00166640
rosa_rugosa	Rorug06G0306400 Rorug06G0306500 Rorug06G0306500 Rorug06G0306600
rosa_samantha	Rh4AG062700 Rh4AG063700 Rh4BG062400 Rh4CG068700 Rh6AG419900 Rh6BG425900 Rh6CG432900 Rh6DG419200
rosa_wichuraiana	Rw6G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	808
Acc36I	ACCTGC	1 cut(s)	808
Acc65I	GGTACC	2 cut(s)	227, 718
AccB1I	GGYRCC	2 cut(s)	227, 718
AccI	GTMKAC	1 cut(s)	558
AccIII	TCCGGA	1 cut(s)	776
AciI	CCGC	1 cut(s)	927
AcoI	YGGCCR	1 cut(s)	836
AcsI	RAATTY	1 cut(s)	247
AfaI	GTAC	2 cut(s)	229, 720
AfiI	CCNNNNNNNGG	3 cut(s)	383, 640, 933
AgeI	ACCGGT	1 cut(s)	19
AgsI	TTSAA	5 cut(s)	14, 253, 515, 639, 728
AluBI	AGCT	8 cut(s)	213, 296, 669, 704, 746, 784, 899, 946
AluI	AGCT	8 cut(s)	213, 296, 669, 704, 746, 784, 899, 946
Alw26I	GTCTC	4 cut(s)	64, 107, 150, 933
Aor13HI	TCCGGA	1 cut(s)	776
AoxI	GGCC	2 cut(s)	524, 836
ApeKI	GCWGC	2 cut(s)	152, 497
ApoI	RAATTY	1 cut(s)	247
AseI	ATTAAT	1 cut(s)	696
AsiGI	ACCGGT	1 cut(s)	19
Asp718I	GGTACC	2 cut(s)	227, 718
AspS9I	GGNCC	2 cut(s)	314, 525
AsuHPI	GGTGA	2 cut(s)	343, 556
AsuII	TTCGAA	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	314
BanI	GGYRCC	2 cut(s)	227, 718
BauI	CACGAG	1 cut(s)	608
BbsI	GAAGAC	1 cut(s)	440
BbvI	GCAGC	2 cut(s)	139, 509
BccI	CCATC	6 cut(s)	218, 314, 338, 431, 749, 803
BcoDI	GTCTC	4 cut(s)	64, 107, 150, 933
BfaI	CTAG	7 cut(s)	33, 96, 282, 480, 743, 830, 878
BfmI	CTRYAG	1 cut(s)	156
BfuAI	ACCTGC	1 cut(s)	808
BisI	GCNGC	3 cut(s)	153, 498, 927
BlsI	GCNGC	3 cut(s)	154, 499, 928
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	2 cut(s)	314, 525
BmiI	GGNNCC	2 cut(s)	229, 720
BmsI	GCATC	5 cut(s)	184, 465, 679, 701, 882
BpiI	GAAGAC	1 cut(s)	440
Bpu14I	TTCGAA	1 cut(s)	89
BpuEI	CTTGAG	1 cut(s)	363
Bsa29I	ATCGAT	1 cut(s)	771
BsaWI	WCCGGW	3 cut(s)	19, 230, 776
Bsc4I	CCNNNNNNNGG	3 cut(s)	383, 640, 933
Bse118I	RCCGGY	2 cut(s)	19, 834
Bse1I	ACTGG	1 cut(s)	448
Bse3DI	GCAATG	1 cut(s)	507
BseAI	TCCGGA	1 cut(s)	776
BseCI	ATCGAT	1 cut(s)	771
BseGI	GGATG	1 cut(s)	349
BseLI	CCNNNNNNNGG	3 cut(s)	383, 640, 933
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	3 cut(s)	118, 161, 921
BseNI	ACTGG	1 cut(s)	448
BseXI	GCAGC	2 cut(s)	139, 509
BshFI	GGCC	2 cut(s)	526, 838
BshNI	GGYRCC	2 cut(s)	227, 718
BshTI	ACCGGT	1 cut(s)	19
BshVI	ATCGAT	1 cut(s)	771
BsiSI	CCGG	4 cut(s)	20, 231, 777, 835
BslFI	GGGAC	1 cut(s)	27
BslI	CCNNNNNNNGG	3 cut(s)	383, 640, 933
BsmAI	GTCTC	4 cut(s)	64, 107, 150, 933
BsmFI	GGGAC	1 cut(s)	27
BsnI	GGCC	2 cut(s)	526, 838
Bsp119I	TTCGAA	1 cut(s)	89
Bsp13I	TCCGGA	1 cut(s)	776
Bsp143I	GATC	2 cut(s)	673, 874
BspACI	CCGC	1 cut(s)	927
BspANI	GGCC	2 cut(s)	526, 838
BspCNI	CTCAG	3 cut(s)	117, 160, 922
BspDI	ATCGAT	1 cut(s)	771
BspEI	TCCGGA	1 cut(s)	776
BspLI	GGNNCC	2 cut(s)	229, 720
BspMI	ACCTGC	1 cut(s)	808
BspT104I	TTCGAA	1 cut(s)	89
BspT107I	GGYRCC	2 cut(s)	227, 718
BsrDI	GCAATG	1 cut(s)	507
BsrFI	RCCGGY	2 cut(s)	19, 834
BsrI	ACTGG	1 cut(s)	448
BssAI	RCCGGY	2 cut(s)	19, 834
BssMI	GATC	2 cut(s)	673, 874
BssSI	CACGAG	1 cut(s)	608
Bst2BI	CACGAG	1 cut(s)	608
Bst4CI	ACNGT	2 cut(s)	160, 915
BstBI	TTCGAA	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	215, 897
BstDEI	CTNAG	3 cut(s)	104, 147, 930
BstEII	GGTNACC	1 cut(s)	122
BstENI	CCTNNNNNAGG	2 cut(s)	381, 638
BstF5I	GGATG	1 cut(s)	349
BstKTI	GATC	2 cut(s)	676, 877
BstMAI	GTCTC	4 cut(s)	64, 107, 150, 933
BstMBI	GATC	2 cut(s)	673, 874
BstMWI	GCNNNNNNNGC	2 cut(s)	620, 790
BstPI	GGTNACC	1 cut(s)	122
BstSFI	CTRYAG	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	139, 509
BstV2I	GAAGAC	1 cut(s)	440
BstXI	CCANNNNNNTGG	1 cut(s)	52
Bsu15I	ATCGAT	1 cut(s)	771
BsuRI	GGCC	2 cut(s)	526, 838
BsuTUI	ATCGAT	1 cut(s)	771
BtsCI	GGATG	1 cut(s)	349
BtsIMutI	CAGTG	1 cut(s)	165
BveI	ACCTGC	1 cut(s)	808
Cac8I	GCNNGC	2 cut(s)	215, 897
Cfr10I	RCCGGY	2 cut(s)	19, 834
Cfr13I	GGNCC	2 cut(s)	314, 525
ClaI	ATCGAT	1 cut(s)	771
Csp6I	GTAC	2 cut(s)	228, 719
CspAI	ACCGGT	1 cut(s)	19
CviAII	CATG	4 cut(s)	328, 553, 889, 987
CviQI	GTAC	2 cut(s)	228, 719
DdeI	CTNAG	3 cut(s)	104, 147, 930
DpnI	GATC	2 cut(s)	675, 876
DpnII	GATC	2 cut(s)	673, 874
EaeI	YGGCCR	1 cut(s)	836
Eco47I	GGWCC	1 cut(s)	314
Eco91I	GGTNACC	1 cut(s)	122
EcoNI	CCTNNNNNAGG	2 cut(s)	381, 638
EcoO65I	GGTNACC	1 cut(s)	122
FaeI	CATG	4 cut(s)	331, 556, 892, 990
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	4 cut(s)	327, 552, 888, 986
FblI	GTMKAC	1 cut(s)	558
Fnu4HI	GCNGC	3 cut(s)	153, 498, 927
FokI	GGATG	1 cut(s)	356
Fsp4HI	GCNGC	3 cut(s)	153, 498, 927
FspBI	CTAG	7 cut(s)	33, 96, 282, 480, 743, 830, 878
GluI	GCNGC	3 cut(s)	153, 498, 927
HaeIII	GGCC	2 cut(s)	526, 838
HapII	CCGG	4 cut(s)	20, 231, 777, 835
Hin1II	CATG	4 cut(s)	331, 556, 892, 990
HincII	GTYRAC	2 cut(s)	76, 733
HindII	GTYRAC	2 cut(s)	76, 733
HindIII	AAGCTT	1 cut(s)	944
HinfI	GANTC	5 cut(s)	100, 163, 388, 765, 773
HpaII	CCGG	4 cut(s)	20, 231, 777, 835
HphI	GGTGA	2 cut(s)	343, 556
Hpy166II	GTNNAC	7 cut(s)	76, 314, 367, 559, 607, 733, 822
Hpy188I	TCNGA	6 cut(s)	107, 183, 223, 658, 688, 808
Hpy188III	TCNNGA	2 cut(s)	608, 777
Hpy8I	GTNNAC	7 cut(s)	76, 314, 367, 559, 607, 733, 822
HpyAV	CCTTC	3 cut(s)	334, 541, 693
HpyCH4III	ACNGT	2 cut(s)	160, 915
HpyCH4V	TGCA	5 cut(s)	175, 416, 692, 714, 895
HpyF10VI	GCNNNNNNNGC	2 cut(s)	620, 790
HpyF3I	CTNAG	3 cut(s)	104, 147, 930
Hsp92II	CATG	4 cut(s)	331, 556, 892, 990
Kpn2I	TCCGGA	1 cut(s)	776
KpnI	GGTACC	2 cut(s)	231, 722
Kzo9I	GATC	2 cut(s)	673, 874
LmnI	GCTCC	1 cut(s)	409
Lsp1109I	GCAGC	2 cut(s)	139, 509
LweI	GCATC	5 cut(s)	184, 465, 679, 701, 882
MaeI	CTAG	7 cut(s)	33, 96, 282, 480, 743, 830, 878
MaeIII	GTNAC	3 cut(s)	122, 486, 592
MalI	GATC	2 cut(s)	675, 876
MboI	GATC	2 cut(s)	673, 874
MboII	GAAGA	9 cut(s)	158, 170, 346, 383, 440, 443, 446, 668, 920
MfeI	CAATTG	2 cut(s)	50, 417
MluCI	AATT	7 cut(s)	50, 113, 247, 397, 417, 693, 971
MlyI	GAGTC	2 cut(s)	109, 774
MmeI	TCCRAC	1 cut(s)	636
MnlI	CCTC	8 cut(s)	177, 259, 295, 342, 377, 387, 568, 604
MroI	TCCGGA	1 cut(s)	776
MseI	TTAA	2 cut(s)	696, 974
MslI	CAYNNNNRTG	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	929
MspI	CCGG	4 cut(s)	20, 231, 777, 835
MunI	CAATTG	2 cut(s)	50, 417
MwoI	GCNNNNNNNGC	2 cut(s)	620, 790
NdeII	GATC	2 cut(s)	673, 874
NlaIII	CATG	4 cut(s)	331, 556, 892, 990
NlaIV	GGNNCC	2 cut(s)	229, 720
NspV	TTCGAA	1 cut(s)	89
PaqCI	CACCTGC	1 cut(s)	808
PfeI	GAWTC	3 cut(s)	163, 388, 773
PinAI	ACCGGT	1 cut(s)	19
PkrI	GCNGC	3 cut(s)	154, 499, 928
PleI	GAGTC	2 cut(s)	108, 773
PpsI	GAGTC	2 cut(s)	108, 773
PshBI	ATTAAT	1 cut(s)	696
PspEI	GGTNACC	1 cut(s)	122
PspN4I	GGNNCC	2 cut(s)	229, 720
PspPI	GGNCC	2 cut(s)	314, 525
RsaI	GTAC	2 cut(s)	229, 720
RsaNI	GTAC	2 cut(s)	228, 719
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	2 cut(s)	696, 974
SatI	GCNGC	3 cut(s)	153, 498, 927
Sau3AI	GATC	2 cut(s)	673, 874
Sau96I	GGNCC	2 cut(s)	314, 525
SchI	GAGTC	2 cut(s)	109, 774
SfaNI	GCATC	5 cut(s)	184, 465, 679, 701, 882
SfcI	CTRYAG	1 cut(s)	156
SfuI	TTCGAA	1 cut(s)	89
SinI	GGWCC	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	378
SmoI	CTYRAG	1 cut(s)	378
Sse9I	AATT	7 cut(s)	50, 113, 247, 397, 417, 693, 971
SsiI	CCGC	1 cut(s)	927
SspMI	CTAG	7 cut(s)	33, 96, 282, 480, 743, 830, 878
TaaI	ACNGT	2 cut(s)	160, 915
TaqI	TCGA	5 cut(s)	89, 358, 672, 771, 873
TasI	AATT	7 cut(s)	50, 113, 247, 397, 417, 693, 971
TauI	GCSGC	1 cut(s)	929
TfiI	GAWTC	3 cut(s)	163, 388, 773
Tru1I	TTAA	2 cut(s)	696, 974
Tru9I	TTAA	2 cut(s)	696, 974
TscAI	CASTG	1 cut(s)	165
TseI	GCWGC	2 cut(s)	152, 497
TspDTI	ATGAA	4 cut(s)	316, 353, 921, 936
TspRI	CASTG	1 cut(s)	165
VpaK11BI	GGWCC	1 cut(s)	314
VspI	ATTAAT	1 cut(s)	696
XagI	CCTNNNNNAGG	2 cut(s)	381, 638
XapI	RAATTY	1 cut(s)	247
XcmI	CCANNNNNNNNNTGG	1 cut(s)	466
XmiI	GTMKAC	1 cut(s)	558
XspI	CTAG	7 cut(s)	33, 96, 282, 480, 743, 830, 878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.