Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003171

Physical Location & Seq

Genomic Coordinates Forward (+)

28317387 .. 28321151

Gene Structure 3765 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g39410.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGGGACTTTGCAAGGGCCAGTGATTTGCCCCACTGTGAGCGCAAAGCAAGCCGGTTCTTACAATCTGCCCATGGTAGGCCCTTTTTTGAAGGTCAGGCATCTTAGAAGTGAGCTGTGGGGATTTAAGGCGTTCAGTGGTTGCATCACTAAGGCAGGCTTTGCTTCTCGTCCTCGAAATGCGAGTAAGTGTACGAGAGTGCATTGTACTTACAGTTCTTCGTCGAATGGGAATGGAAGCATGGCAGAGAATTTTAATGAAAATGATGAGGACTATGTGAACTCTAGCGTACTTGAAGCCGTTGAGGTGAAGAGTGGAGCTGATGGGTTCATGATTAAAATGAGGGATGGCAGGCACATGAGGTGTGTCCATAACAACCCTCAGGGTGGTCATCTGCCAGACTATGCTCCACATCCCGCTATTGTATTGAAGATGGAAGATGGGACTGGCCTTGTGCTTCCAATTATTGTTTTGGAAATGCCTAGTGTGTTGCTCATGGCAGCAGTGCGCAATGTTCCTATTGCTAGGCCAACTATGTATCAGGTGGTGAGGGAAATGATTGACAAGATGGGTTATGAGGTCCAGCTTGTTAGAGTCACTAAGAGAGTGCATGAAGCATATTTTGCTCAGTTATACCTCAGAAAGGCAGGTAGTGAGACAGAGTTTGTCAGCTTTGACCTTCGGCCCTCAGATGCCATCAACATTGCTGTAAGATGCAAGGTTCCCATACAAGTTAACAAGTATCTAGCATACAGTGATGGTATGAGAGTTATCGAGTCTGGAAAACTCTCTGTGCATTCCCCTGCTTCAGATGGTTTATTGTTTACTGAACTGGATCGGCCAAATGGTCAGCCATGTATTGAAACAAAGGAGTTTAATCTTGTGCGGAATATGCTTATTGCTGCTGTTGAGGAACGTTACAGAGATGCTGCTCAGTGGAGGGACAAACTCCTTCAATTTCGTGCTAAAAAGAACTTGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043207 GO:0043565 GO:0044237 GO:0044238 GO:0046483 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0098542 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNase-RNase UVR

Protein Analysis

328

Amino Acids

36.44

Weight (kDa)

9.09

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BFN_dom	PF02577	61 - 173	1.2e-21	Bifunctional nuclease domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19660 AT1G19660 AT1G19660 AT1G75380 AT1G75380 AT1G75380 AT1G75380
fragaria_vesca	FvH4_2g39410 FvH4_2g39410 FvH4_2g39410
malus_domestica	MD08G1026400.v1.1 MD15G1023200.v1.1
prunus_persica	Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0301571
rosa_laevigata	RLG00000009590 RLG00000011243
rosa_multiflora	Rmu_ssc0000452.1_g000006
rosa_roxburghii	Rroxscaffold_7G00166640
rosa_rugosa	Rorug06G0306400 Rorug06G0306500 Rorug06G0306500 Rorug06G0306600
rosa_samantha	Rh4AG062700 Rh4AG063700 Rh4BG062400 Rh4CG068700 Rh6AG419900 Rh6BG425900 Rh6CG432900 Rh6DG419200
rosa_wichuraiana	Rw6G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	509
Acc36I	ACCTGC	1 cut(s)	638
AciI	CCGC	2 cut(s)	417, 886
AclI	AACGTT	1 cut(s)	916
AclWI	GGATC	1 cut(s)	843
AcoI	YGGCCR	1 cut(s)	839
AcsI	RAATTY	1 cut(s)	250
AcuI	CTGAAG	1 cut(s)	792
AfaI	GTAC	3 cut(s)	193, 208, 291
AfiI	CCNNNNNNNGG	3 cut(s)	77, 386, 643
AgsI	TTSAA	5 cut(s)	91, 296, 430, 863, 956
AluBI	AGCT	4 cut(s)	115, 320, 586, 672
AluI	AGCT	4 cut(s)	115, 320, 586, 672
Alw26I	GTCTC	1 cut(s)	650
AlwI	GGATC	1 cut(s)	843
AoxI	GGCC	6 cut(s)	17, 79, 448, 527, 683, 839
ApeKI	GCWGC	3 cut(s)	500, 902, 929
ApoI	RAATTY	1 cut(s)	250
AspLEI	GCGC	2 cut(s)	44, 510
AspS9I	GGNCC	4 cut(s)	17, 80, 580, 684
AsuHPI	GGTGA	2 cut(s)	319, 559
AvaII	GGWCC	1 cut(s)	580
AxyI	CCTNAGG	1 cut(s)	381
BbvI	GCAGC	3 cut(s)	512, 889, 916
BccI	CCATC	8 cut(s)	317, 341, 427, 434, 562, 704, 752, 806
BceAI	ACGGC	1 cut(s)	284
BcoDI	GTCTC	1 cut(s)	650
BfaI	CTAG	4 cut(s)	285, 483, 525, 746
BfuAI	ACCTGC	1 cut(s)	638
BisI	GCNGC	3 cut(s)	501, 903, 930
BlsI	GCNGC	3 cut(s)	502, 904, 931
Bme18I	GGWCC	1 cut(s)	580
BmgT120I	GGNCC	4 cut(s)	17, 80, 580, 684
BmiI	GGNNCC	1 cut(s)	723
BmsI	GCATC	5 cut(s)	109, 153, 682, 704, 916
BsaJI	CCNNGG	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 386, 643
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	3 cut(s)	20, 451, 837
Bse21I	CCTNAGG	1 cut(s)	381
Bse3DI	GCAATG	2 cut(s)	517, 702
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	2 cut(s)	352, 412
BseLI	CCNNNNNNNGG	3 cut(s)	77, 386, 643
BseMI	GCAATG	2 cut(s)	517, 702
BseMII	CTCAG	5 cut(s)	395, 641, 652, 702, 947
BseNI	ACTGG	3 cut(s)	20, 451, 837
BseXI	GCAGC	3 cut(s)	512, 889, 916
BshFI	GGCC	6 cut(s)	19, 81, 450, 529, 685, 841
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	3 cut(s)	19, 457, 956
BslI	CCNNNNNNNGG	3 cut(s)	77, 386, 643
BsmAI	GTCTC	1 cut(s)	650
BsmFI	GGGAC	3 cut(s)	19, 457, 956
BsmI	GAATGC	1 cut(s)	796
BsnI	GGCC	6 cut(s)	19, 81, 450, 529, 685, 841
Bsp143I	GATC	1 cut(s)	835
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	2 cut(s)	417, 886
BspANI	GGCC	6 cut(s)	19, 81, 450, 529, 685, 841
BspCNI	CTCAG	5 cut(s)	394, 640, 651, 701, 946
BspHI	TCATGA	1 cut(s)	330
BspLI	GGNNCC	1 cut(s)	723
BspMI	ACCTGC	1 cut(s)	638
BspPI	GGATC	1 cut(s)	843
BsrDI	GCAATG	2 cut(s)	517, 702
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	3 cut(s)	20, 451, 837
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	1 cut(s)	835
BssT1I	CCWWGG	1 cut(s)	72
Bst4CI	ACNGT	3 cut(s)	37, 215, 755
Bst6I	CTCTTC	1 cut(s)	305
BstAPI	GCANNNNNTGC	2 cut(s)	161, 623
BstC8I	GCNNGC	3 cut(s)	51, 157, 353
BstDEI	CTNAG	8 cut(s)	104, 150, 381, 600, 627, 638, 688, 933
BstDSI	CCRYGG	1 cut(s)	72
BstENI	CCTNNNNNAGG	1 cut(s)	641
BstF5I	GGATG	2 cut(s)	352, 412
BstHHI	GCGC	2 cut(s)	44, 510
BstKTI	GATC	1 cut(s)	838
BstMAI	GTCTC	1 cut(s)	650
BstMBI	GATC	1 cut(s)	835
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 161, 623, 892
BstV1I	GCAGC	3 cut(s)	512, 889, 916
Bsu36I	CCTNAGG	1 cut(s)	381
BsuRI	GGCC	6 cut(s)	19, 81, 450, 529, 685, 841
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	2 cut(s)	352, 412
BtsI	GCAGTG	1 cut(s)	510
BtsIMutI	CAGTG	6 cut(s)	27, 33, 142, 510, 760, 941
BveI	ACCTGC	1 cut(s)	638
Cac8I	GCNNGC	3 cut(s)	51, 157, 353
CciI	TCATGA	1 cut(s)	330
CfoI	GCGC	2 cut(s)	44, 510
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	4 cut(s)	17, 80, 580, 684
Csp6I	GTAC	3 cut(s)	192, 207, 290
CviAII	CATG	7 cut(s)	73, 241, 331, 358, 496, 611, 855
CviQI	GTAC	3 cut(s)	192, 207, 290
DdeI	CTNAG	8 cut(s)	104, 150, 381, 600, 627, 638, 688, 933
DpnI	GATC	1 cut(s)	837
DpnII	GATC	1 cut(s)	835
EaeI	YGGCCR	1 cut(s)	839
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
Eco130I	CCWWGG	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	580
Eco57I	CTGAAG	1 cut(s)	792
Eco81I	CCTNAGG	1 cut(s)	381
EcoNI	CCTNNNNNAGG	1 cut(s)	641
EcoO109I	RGGNCCY	1 cut(s)	80
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	7 cut(s)	76, 244, 334, 361, 499, 614, 858
FalI	AAGNNNNNCTT	2 cut(s)	143, 175
FaqI	GGGAC	3 cut(s)	19, 457, 956
FatI	CATG	7 cut(s)	72, 240, 330, 357, 495, 610, 854
FauI	CCCGC	1 cut(s)	424
Fnu4HI	GCNGC	3 cut(s)	501, 903, 930
FokI	GGATG	2 cut(s)	359, 399
Fsp4HI	GCNGC	3 cut(s)	501, 903, 930
FspBI	CTAG	4 cut(s)	285, 483, 525, 746
FspI	TGCGCA	1 cut(s)	509
GlaI	GCGC	2 cut(s)	43, 509
GluI	GCNGC	3 cut(s)	501, 903, 930
HaeIII	GGCC	6 cut(s)	19, 81, 450, 529, 685, 841
HapII	CCGG	1 cut(s)	54
HhaI	GCGC	2 cut(s)	44, 510
Hin1II	CATG	7 cut(s)	76, 244, 334, 361, 499, 614, 858
Hin6I	GCGC	2 cut(s)	42, 508
HinP1I	GCGC	2 cut(s)	42, 508
HincII	GTYRAC	1 cut(s)	736
HindII	GTYRAC	1 cut(s)	736
HinfI	GANTC	2 cut(s)	594, 776
HpaI	GTTAAC	1 cut(s)	736
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	2 cut(s)	319, 559
Hpy166II	GTNNAC	4 cut(s)	192, 280, 736, 825
Hpy188I	TCNGA	3 cut(s)	641, 691, 811
Hpy188III	TCNNGA	2 cut(s)	331, 780
Hpy8I	GTNNAC	4 cut(s)	192, 280, 736, 825
Hpy99I	CGWCG	1 cut(s)	226
HpyAV	CCTTC	3 cut(s)	85, 689, 962
HpyCH4III	ACNGT	3 cut(s)	37, 215, 755
HpyCH4IV	ACGT	1 cut(s)	916
HpyCH4V	TGCA	6 cut(s)	13, 144, 202, 610, 717, 796
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 161, 623, 892
HpyF3I	CTNAG	8 cut(s)	104, 150, 381, 600, 627, 638, 688, 933
HpySE526I	ACGT	1 cut(s)	916
Hsp92II	CATG	7 cut(s)	76, 244, 334, 361, 499, 614, 858
HspAI	GCGC	2 cut(s)	42, 508
KspAI	GTTAAC	1 cut(s)	736
Kzo9I	GATC	1 cut(s)	835
LmnI	GCTCC	2 cut(s)	317, 412
Lsp1109I	GCAGC	3 cut(s)	512, 889, 916
LweI	GCATC	5 cut(s)	109, 153, 682, 704, 916
MaeI	CTAG	4 cut(s)	285, 483, 525, 746
MaeII	ACGT	1 cut(s)	916
MaeIII	GTNAC	2 cut(s)	595, 917
MalI	GATC	1 cut(s)	837
MboI	GATC	1 cut(s)	835
MboII	GAAGA	4 cut(s)	210, 322, 442, 449
MluCI	AATT	3 cut(s)	250, 462, 956
MlyI	GAGTC	2 cut(s)	603, 785
MseI	TTAA	5 cut(s)	126, 255, 336, 735, 876
MspI	CCGG	1 cut(s)	54
Mva1269I	GAATGC	1 cut(s)	796
MwoI	GCNNNNNNNGC	4 cut(s)	50, 161, 623, 892
NcoI	CCATGG	1 cut(s)	72
NdeII	GATC	1 cut(s)	835
NlaIII	CATG	7 cut(s)	76, 244, 334, 361, 499, 614, 858
NlaIV	GGNNCC	1 cut(s)	723
NmuCI	GTSAC	1 cut(s)	595
NsbI	TGCGCA	1 cut(s)	509
PagI	TCATGA	1 cut(s)	330
PctI	GAATGC	1 cut(s)	796
PkrI	GCNGC	3 cut(s)	502, 904, 931
PleI	GAGTC	2 cut(s)	602, 784
PpsI	GAGTC	2 cut(s)	602, 784
Psp1406I	AACGTT	1 cut(s)	916
PspN4I	GGNNCC	1 cut(s)	723
PspPI	GGNCC	4 cut(s)	17, 80, 580, 684
PsrI	GAACNNNNNNTAC	2 cut(s)	199, 231
RsaI	GTAC	3 cut(s)	193, 208, 291
RsaNI	GTAC	3 cut(s)	192, 207, 290
SaqAI	TTAA	5 cut(s)	126, 255, 336, 735, 876
SatI	GCNGC	3 cut(s)	501, 903, 930
Sau3AI	GATC	1 cut(s)	835
Sau96I	GGNCC	4 cut(s)	17, 80, 580, 684
SchI	GAGTC	2 cut(s)	603, 785
SfaNI	GCATC	5 cut(s)	109, 153, 682, 704, 916
SinI	GGWCC	1 cut(s)	580
Sse9I	AATT	3 cut(s)	250, 462, 956
SsiI	CCGC	2 cut(s)	417, 886
SspMI	CTAG	4 cut(s)	285, 483, 525, 746
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	3 cut(s)	37, 215, 755
TaiI	ACGT	1 cut(s)	919
TaqI	TCGA	3 cut(s)	175, 224, 774
TasI	AATT	3 cut(s)	250, 462, 956
TatI	WGTACW	1 cut(s)	206
Tru1I	TTAA	5 cut(s)	126, 255, 336, 735, 876
Tru9I	TTAA	5 cut(s)	126, 255, 336, 735, 876
TscAI	CASTG	6 cut(s)	27, 40, 142, 510, 760, 941
TseFI	GTSAC	1 cut(s)	595
TseI	GCWGC	3 cut(s)	500, 902, 929
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	3 cut(s)	273, 319, 627
TspRI	CASTG	6 cut(s)	27, 40, 142, 510, 760, 941
VpaK11BI	GGWCC	1 cut(s)	580
XagI	CCTNNNNNAGG	1 cut(s)	641
XapI	RAATTY	1 cut(s)	250
XspI	CTAG	4 cut(s)	285, 483, 525, 746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.