Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0003171

Physical Location & Seq

Genomic Coordinates Forward (+)

11165436 .. 11166181

Gene Structure 746 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG062400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGCACACAGTGATGGTATGAGAGTTATTGAATCGGGAATCCTCACTACAAATACCACTACTTCAAATGGCTTATTGTTTACTAAACTAGATCGGCCAAATGGTCAGCCATGTGTTGAAACAGAGGAGTTTAATCTTGTGCCGGAACATGCTTATTCTGCTGTTGAGGAACGTTACAGACTTACAGTGATGATGCTCAATGGAGAGACAAACTCCTGCAACTTCGTGCTAAAAAGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043207 GO:0043565 GO:0044237 GO:0044238 GO:0046483 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0098542 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNase-RNase UVR

Protein Analysis

80

Amino Acids

8.95

Weight (kDa)

5.22

Isoelectric Point (pI)

24.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19660 AT1G19660 AT1G19660 AT1G75380 AT1G75380 AT1G75380 AT1G75380
fragaria_vesca	FvH4_2g39410 FvH4_2g39410 FvH4_2g39410
malus_domestica	MD08G1026400.v1.1 MD15G1023200.v1.1
prunus_persica	Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0301571
rosa_laevigata	RLG00000009590 RLG00000011243
rosa_multiflora	Rmu_ssc0000452.1_g000006
rosa_roxburghii	Rroxscaffold_7G00166640
rosa_rugosa	Rorug06G0306400 Rorug06G0306500 Rorug06G0306500 Rorug06G0306600
rosa_samantha	Rh4AG062700 Rh4AG063700 Rh4BG062400 Rh4CG068700 Rh6AG419900 Rh6BG425900 Rh6CG432900 Rh6DG419200
rosa_wichuraiana	Rw6G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	172
AcoI	YGGCCR	1 cut(s)	95
AdeI	CACNNNGTG	1 cut(s)	11
AgsI	TTSAA	3 cut(s)	32, 66, 119
AluBI	AGCT	1 cut(s)	239
AluI	AGCT	1 cut(s)	239
Alw26I	GTCTC	1 cut(s)	200
AoxI	GGCC	1 cut(s)	95
BccI	CCATC	1 cut(s)	8
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	1 cut(s)	89
BmsI	GCATC	1 cut(s)	183
BplI	GAGNNNNNCTC	2 cut(s)	197, 229
BseRI	GAGGAG	1 cut(s)	140
BshFI	GGCC	1 cut(s)	97
BsiSI	CCGG	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	97
Bsp143I	GATC	1 cut(s)	91
BspANI	GGCC	1 cut(s)	97
BssMI	GATC	1 cut(s)	91
Bst4CI	ACNGT	2 cut(s)	11, 187
BstKTI	GATC	1 cut(s)	94
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNSI	RCATGY	1 cut(s)	152
BsuRI	GGCC	1 cut(s)	97
BtsIMutI	CAGTG	2 cut(s)	16, 192
CviAII	CATG	2 cut(s)	111, 149
CviJI	RGCY	4 cut(s)	72, 97, 109, 239
CviKI_1	RGCY	4 cut(s)	72, 97, 109, 239
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
DraIII	CACNNNGTG	1 cut(s)	11
EaeI	YGGCCR	1 cut(s)	95
FaeI	CATG	2 cut(s)	114, 152
FaiI	YATR	3 cut(s)	20, 112, 150
FatI	CATG	2 cut(s)	110, 148
FspBI	CTAG	1 cut(s)	89
HaeIII	GGCC	1 cut(s)	97
HapII	CCGG	1 cut(s)	143
Hin1II	CATG	2 cut(s)	114, 152
HinfI	GANTC	2 cut(s)	32, 39
HpaII	CCGG	1 cut(s)	143
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188III	TCNNGA	1 cut(s)	36
Hpy8I	GTNNAC	1 cut(s)	81
HpyCH4III	ACNGT	2 cut(s)	11, 187
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	1 cut(s)	219
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpySE526I	ACGT	1 cut(s)	172
Hsp92II	CATG	2 cut(s)	114, 152
Kzo9I	GATC	1 cut(s)	91
LpnPI	CCDG	2 cut(s)	156, 229
LweI	GCATC	1 cut(s)	183
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	1 cut(s)	172
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MnlI	CCTC	3 cut(s)	53, 118, 160
MseI	TTAA	1 cut(s)	132
MslI	CAYNNNNRTG	1 cut(s)	12
MspI	CCGG	1 cut(s)	143
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeII	GATC	1 cut(s)	91
NlaIII	CATG	2 cut(s)	114, 152
NspI	RCATGY	1 cut(s)	152
PfeI	GAWTC	2 cut(s)	32, 39
Psp1406I	AACGTT	1 cut(s)	172
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	132
Sau3AI	GATC	1 cut(s)	91
SetI	ASST	2 cut(s)	175, 241
SfaNI	GCATC	1 cut(s)	183
SgeI	CNNG	8 cut(s)	48, 101, 123, 149, 155, 161, 228, 238
SmiMI	CAYNNNNRTG	1 cut(s)	12
SspMI	CTAG	1 cut(s)	89
TaaI	ACNGT	2 cut(s)	11, 187
TaiI	ACGT	1 cut(s)	175
TfiI	GAWTC	2 cut(s)	32, 39
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	2 cut(s)	16, 192
TspRI	CASTG	2 cut(s)	16, 192
XceI	RCATGY	1 cut(s)	152
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.