Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003171

Physical Location & Seq

Genomic Coordinates Forward (+)

7933502 .. 7941576

Gene Structure 8075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011243

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGCCTTTACAGCCAATGATGCATAGGCTTTTCTACAGAAGTGGTTTCTCAAGTTCCCATCATACAGAACAAGAACCTTCTACATTGCAGGGGAGAGTTATGCAGAAAAATAAGATACATATATTTACCAGGCACTCCAGCACTGCTGCACTCTTCAAGAAATCACCTCACAAGAATCAAAAGGAGAAAGACCCATGCAATAATTCTGGAATTTATGCACTGGCAACTGACTTGACTGAATCAGATGGGAGAGTTGTAATGAATCAAACCGCATATTACTACTCCAGCAAGCAATGTCCTTATTCATTGCTTCATAAATATATTTGGGCATCGGATCATCAATCTTTGTTGTTAAAAGGATTTATGATGGGGTCTTTGCAAGGGCCAGTGATTTGCCCCACTGTCAGCGCAAAGCAAGCGGGTTCTTACAATCTGCCCATGGTAGGCCCTCTGTTGAAGGTCAGGCATCTGAGAAGTGAGCTATGGGGATTGAAGGGAATCAGTGGTTGCATCACTAAGGCAGGCTTTGCTACTCGCCCGCAAAATGCACGAAAATGCACAAGAGTGCATTGTACTTTCAGTTCTTCGTCAAATGGGAATGGAAGCATGGCAGAGAATTTCAATGAAAATGATGAAGACTATGTTAATTCTAGTGTACTGGAGGCCGTTGAGGTAAAGAGTGGAGCTGATGGGTTCATGATCAAAATGAGGGATGGCAGGCACATGAGGTGTGTCCATAACAACCCTCAGGGTGGCCATCTGCCAGACTATGCTCCACATCCCGCAATTGTACTGAAGATGGAAGATGGGACTGGCCTTCTTCTCCCAATTATTGTTTTGGAAATGCCTAGTGTGTTGCTCATGGCAGCAGTGCGCAATGTTCCTATTGCTAGGCCAACTATGTATCAAGTGGTGAGGGAAATGATTGACAAGATGGGCTATGAGGTCCAACTTGTTAGAGTCACTAAGAGAGTGCATGAAGCATATTTTGCTCAGTTATACCTCAGAAAGGCGGGTAGTGAAACAGAGTTTGTCAGCTTTGACCTTCGGCCTTCAGATGCCATCAACATTGCTGTAAGATGCAAGGTTCCCATACAAGTTAACAAGTATCTGGCATACAGTGATGGGATGAGAGTTATTGAATCTGGAAAGCTCTCTACGCATACCCCTGCTTCAGACGGCTTATTGTTTACTGAACTGGATCGGCCAAATGGTAAGCCGTGTGTGGAGACAAAGGAGTTTAATCTTGTGCGCAACATGCTTATTGCTGCTGTTGAAGAACGCTACAGAGATGCTGCTCAATGGAGGGACAAGCTCCTCCAACTTCGTGCTAAAAAGAACTTGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043207 GO:0043565 GO:0044237 GO:0044238 GO:0046483 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0098542 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNase-RNase UVR

Protein Analysis

450

Amino Acids

50.43

Weight (kDa)

9.37

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BFN_dom	PF02577	263 - 374	6.1e-21	Bifunctional nuclease domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19660 AT1G19660 AT1G19660 AT1G75380 AT1G75380 AT1G75380 AT1G75380
fragaria_vesca	FvH4_2g39410 FvH4_2g39410 FvH4_2g39410
malus_domestica	MD08G1026400.v1.1 MD15G1023200.v1.1
prunus_persica	Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0301571
rosa_laevigata	RLG00000009590 RLG00000011243
rosa_multiflora	Rmu_ssc0000452.1_g000006
rosa_roxburghii	Rroxscaffold_7G00166640
rosa_rugosa	Rorug06G0306400 Rorug06G0306500 Rorug06G0306500 Rorug06G0306600
rosa_samantha	Rh4AG062700 Rh4AG063700 Rh4BG062400 Rh4CG068700 Rh6AG419900 Rh6BG425900 Rh6CG432900 Rh6DG419200
rosa_wichuraiana	Rw6G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	875, 1253
AciI	CCGC	5 cut(s)	270, 419, 539, 783, 1013
AclWI	GGATC	2 cut(s)	342, 1209
AcoI	YGGCCR	2 cut(s)	754, 1205
AcsI	RAATTY	2 cut(s)	210, 616
AcuI	CTGAAG	3 cut(s)	815, 1038, 1158
AfaI	GTAC	3 cut(s)	574, 657, 792
AfiI	CCNNNNNNNGG	3 cut(s)	443, 752, 1009
AgsI	TTSAA	6 cut(s)	157, 457, 493, 622, 1142, 1277
AjnI	CCWGG	1 cut(s)	128
AleI	CACNNNNGTG	1 cut(s)	563
AluBI	AGCT	5 cut(s)	481, 686, 1038, 1153, 1315
AluI	AGCT	5 cut(s)	481, 686, 1038, 1153, 1315
Alw26I	GTCTC	1 cut(s)	1223
AlwI	GGATC	2 cut(s)	342, 1209
AoxI	GGCC	8 cut(s)	383, 445, 663, 754, 814, 893, 1049, 1205
ApeKI	GCWGC	4 cut(s)	146, 866, 1268, 1295
ApoI	RAATTY	2 cut(s)	210, 616
AspLEI	GCGC	3 cut(s)	410, 876, 1254
AspS9I	GGNCC	3 cut(s)	383, 446, 946
AsuHPI	GGTGA	2 cut(s)	156, 925
AvaII	GGWCC	1 cut(s)	946
AxyI	CCTNAGG	1 cut(s)	747
BalI	TGGCCA	1 cut(s)	756
BbsI	GAAGAC	1 cut(s)	642
BbvI	GCAGC	4 cut(s)	133, 878, 1255, 1282
BceAI	ACGGC	3 cut(s)	650, 1195, 1204
BciT130I	CCWGG	1 cut(s)	130
BclI	TGATCA	1 cut(s)	699
BcoDI	GTCTC	1 cut(s)	1223
BfaI	CTAG	3 cut(s)	651, 849, 891
BfmI	CTRYAG	2 cut(s)	34, 1285
BisI	GCNGC	4 cut(s)	147, 867, 1269, 1296
BlsI	GCNGC	4 cut(s)	148, 868, 1270, 1297
Bme1390I	CCNGG	1 cut(s)	130
Bme18I	GGWCC	1 cut(s)	946
BmgT120I	GGNCC	3 cut(s)	383, 446, 946
BmiI	GGNNCC	1 cut(s)	1089
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	7 cut(s)	9, 338, 475, 519, 1048, 1070, 1282
BpiI	GAAGAC	1 cut(s)	642
BpmI	CTGGAG	3 cut(s)	121, 268, 680
BpuEI	CTTGAG	1 cut(s)	34
BsaJI	CCNNGG	1 cut(s)	438
Bsc4I	CCNNNNNNNGG	3 cut(s)	443, 752, 1009
Bse1I	ACTGG	5 cut(s)	225, 386, 663, 817, 1203
Bse21I	CCTNAGG	1 cut(s)	747
Bse3DI	GCAATG	5 cut(s)	83, 299, 305, 883, 1068
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	1 cut(s)	438
BseGI	GGATG	3 cut(s)	718, 778, 1134
BseLI	CCNNNNNNNGG	3 cut(s)	443, 752, 1009
BseMI	GCAATG	5 cut(s)	83, 299, 305, 883, 1068
BseMII	CTCAG	4 cut(s)	461, 761, 1007, 1018
BseNI	ACTGG	5 cut(s)	225, 386, 663, 817, 1203
BseRI	GAGGAG	1 cut(s)	1307
BseXI	GCAGC	4 cut(s)	133, 878, 1255, 1282
BsgI	GTGCAG	1 cut(s)	132
BshFI	GGCC	8 cut(s)	385, 447, 665, 756, 816, 895, 1051, 1207
BslFI	GGGAC	2 cut(s)	823, 1322
BslI	CCNNNNNNNGG	3 cut(s)	443, 752, 1009
BsmAI	GTCTC	1 cut(s)	1223
BsmFI	GGGAC	2 cut(s)	823, 1322
BsnI	GGCC	8 cut(s)	385, 447, 665, 756, 816, 895, 1051, 1207
Bsp143I	GATC	3 cut(s)	334, 699, 1201
Bsp19I	CCATGG	1 cut(s)	438
BspACI	CCGC	5 cut(s)	270, 419, 539, 783, 1013
BspANI	GGCC	8 cut(s)	385, 447, 665, 756, 816, 895, 1051, 1207
BspCNI	CTCAG	4 cut(s)	462, 760, 1006, 1017
BspHI	TCATGA	1 cut(s)	696
BspLI	GGNNCC	1 cut(s)	1089
BspPI	GGATC	2 cut(s)	342, 1209
BsrDI	GCAATG	5 cut(s)	83, 299, 305, 883, 1068
BsrI	ACTGG	5 cut(s)	225, 386, 663, 817, 1203
BssECI	CCNNGG	1 cut(s)	438
BssMI	GATC	3 cut(s)	334, 699, 1201
BssT1I	CCWWGG	1 cut(s)	438
Bst2UI	CCWGG	1 cut(s)	130
Bst4CI	ACNGT	2 cut(s)	403, 1121
Bst6I	CTCTTC	1 cut(s)	158
BstAPI	GCANNNNNTGC	2 cut(s)	527, 989
BstC8I	GCNNGC	5 cut(s)	290, 417, 523, 539, 719
BstDEI	CTNAG	6 cut(s)	470, 516, 747, 966, 993, 1004
BstDSI	CCRYGG	1 cut(s)	438
BstENI	CCTNNNNNAGG	1 cut(s)	1007
BstF5I	GGATG	3 cut(s)	718, 778, 1134
BstHHI	GCGC	3 cut(s)	410, 876, 1254
BstKTI	GATC	3 cut(s)	337, 702, 1204
BstMAI	GTCTC	1 cut(s)	1223
BstMBI	GATC	3 cut(s)	334, 699, 1201
BstMWI	GCNNNNNNNGC	7 cut(s)	10, 19, 416, 527, 989, 1159, 1258
BstNI	CCWGG	1 cut(s)	130
BstNSI	RCATGY	1 cut(s)	1261
BstSCI	CCNGG	1 cut(s)	128
BstSFI	CTRYAG	2 cut(s)	34, 1285
BstV1I	GCAGC	4 cut(s)	133, 878, 1255, 1282
BstV2I	GAAGAC	1 cut(s)	642
Bsu36I	CCTNAGG	1 cut(s)	747
BsuRI	GGCC	8 cut(s)	385, 447, 665, 756, 816, 895, 1051, 1207
BtgI	CCRYGG	1 cut(s)	438
BtsCI	GGATG	3 cut(s)	718, 778, 1134
BtsI	GCAGTG	2 cut(s)	141, 876
BtsIMutI	CAGTG	7 cut(s)	141, 218, 393, 399, 508, 876, 1126
Cac8I	GCNNGC	5 cut(s)	290, 417, 523, 539, 719
CciI	TCATGA	1 cut(s)	696
CfoI	GCGC	3 cut(s)	410, 876, 1254
Cfr13I	GGNCC	3 cut(s)	383, 446, 946
Csp6I	GTAC	3 cut(s)	573, 656, 791
CviAII	CATG	8 cut(s)	195, 439, 607, 697, 724, 862, 977, 1258
CviQI	GTAC	3 cut(s)	573, 656, 791
DdeI	CTNAG	6 cut(s)	470, 516, 747, 966, 993, 1004
DpnI	GATC	3 cut(s)	336, 701, 1203
DpnII	GATC	3 cut(s)	334, 699, 1201
EaeI	YGGCCR	2 cut(s)	754, 1205
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco130I	CCWWGG	1 cut(s)	438
Eco47I	GGWCC	1 cut(s)	946
Eco57I	CTGAAG	3 cut(s)	815, 1038, 1158
Eco81I	CCTNAGG	1 cut(s)	747
EcoNI	CCTNNNNNAGG	1 cut(s)	1007
EcoO109I	RGGNCCY	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	438
EcoT22I	ATGCAT	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	438
FaeI	CATG	8 cut(s)	198, 442, 610, 700, 727, 865, 980, 1261
FalI	AAGNNNNNCTT	2 cut(s)	509, 541
FaqI	GGGAC	2 cut(s)	823, 1322
FatI	CATG	8 cut(s)	194, 438, 606, 696, 723, 861, 976, 1257
FauI	CCCGC	4 cut(s)	412, 546, 790, 1006
FbaI	TGATCA	1 cut(s)	699
Fnu4HI	GCNGC	4 cut(s)	147, 867, 1269, 1296
FokI	GGATG	3 cut(s)	725, 765, 1141
Fsp4HI	GCNGC	4 cut(s)	147, 867, 1269, 1296
FspBI	CTAG	3 cut(s)	651, 849, 891
FspI	TGCGCA	2 cut(s)	875, 1253
GlaI	GCGC	3 cut(s)	409, 875, 1253
GluI	GCNGC	4 cut(s)	147, 867, 1269, 1296
GsuI	CTGGAG	3 cut(s)	121, 268, 680
HaeIII	GGCC	8 cut(s)	385, 447, 665, 756, 816, 895, 1051, 1207
HhaI	GCGC	3 cut(s)	410, 876, 1254
Hin1II	CATG	8 cut(s)	198, 442, 610, 700, 727, 865, 980, 1261
Hin6I	GCGC	3 cut(s)	408, 874, 1252
HinP1I	GCGC	3 cut(s)	408, 874, 1252
HincII	GTYRAC	1 cut(s)	1102
HindII	GTYRAC	1 cut(s)	1102
HinfI	GANTC	6 cut(s)	175, 239, 262, 498, 960, 1142
HpaI	GTTAAC	1 cut(s)	1102
HphI	GGTGA	2 cut(s)	156, 925
Hpy166II	GTNNAC	3 cut(s)	656, 1102, 1191
Hpy188I	TCNGA	6 cut(s)	244, 334, 471, 1007, 1057, 1177
Hpy188III	TCNNGA	4 cut(s)	157, 207, 697, 1146
Hpy8I	GTNNAC	3 cut(s)	656, 1102, 1191
HpyAV	CCTTC	6 cut(s)	87, 451, 487, 827, 1055, 1062
HpyCH4III	ACNGT	2 cut(s)	403, 1121
HpyF10VI	GCNNNNNNNGC	7 cut(s)	10, 19, 416, 527, 989, 1159, 1258
HpyF3I	CTNAG	6 cut(s)	470, 516, 747, 966, 993, 1004
Hsp92II	CATG	8 cut(s)	198, 442, 610, 700, 727, 865, 980, 1261
HspAI	GCGC	3 cut(s)	408, 874, 1252
Ksp22I	TGATCA	1 cut(s)	699
KspAI	GTTAAC	1 cut(s)	1102
Kzo9I	GATC	3 cut(s)	334, 699, 1201
LmnI	GCTCC	3 cut(s)	683, 778, 1320
Lsp1109I	GCAGC	4 cut(s)	133, 878, 1255, 1282
LweI	GCATC	7 cut(s)	9, 338, 475, 519, 1048, 1070, 1282
MaeI	CTAG	3 cut(s)	651, 849, 891
MaeIII	GTNAC	1 cut(s)	961
MalI	GATC	3 cut(s)	336, 701, 1203
MboI	GATC	3 cut(s)	334, 699, 1201
MboII	GAAGA	7 cut(s)	145, 576, 647, 808, 812, 815, 1289
MfeI	CAATTG	1 cut(s)	786
MlsI	TGGCCA	1 cut(s)	756
MluCI	AATT	6 cut(s)	202, 210, 616, 646, 786, 828
MluNI	TGGCCA	1 cut(s)	756
MlyI	GAGTC	1 cut(s)	969
MmeI	TCCRAC	2 cut(s)	973, 1345
Mox20I	TGGCCA	1 cut(s)	756
Mph1103I	ATGCAT	1 cut(s)	24
MscI	TGGCCA	1 cut(s)	756
MseI	TTAA	4 cut(s)	353, 645, 1101, 1242
MslI	CAYNNNNRTG	2 cut(s)	553, 563
Msp20I	TGGCCA	1 cut(s)	756
MspR9I	CCNGG	1 cut(s)	130
MunI	CAATTG	1 cut(s)	786
MvaI	CCWGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	7 cut(s)	10, 19, 416, 527, 989, 1159, 1258
NcoI	CCATGG	1 cut(s)	438
NdeII	GATC	3 cut(s)	334, 699, 1201
NlaIII	CATG	8 cut(s)	198, 442, 610, 700, 727, 865, 980, 1261
NlaIV	GGNNCC	1 cut(s)	1089
NmuCI	GTSAC	1 cut(s)	961
NsbI	TGCGCA	2 cut(s)	875, 1253
NsiI	ATGCAT	1 cut(s)	24
NspI	RCATGY	1 cut(s)	1261
OliI	CACNNNNGTG	1 cut(s)	563
PagI	TCATGA	1 cut(s)	696
PfeI	GAWTC	5 cut(s)	175, 239, 262, 498, 1142
PkrI	GCNGC	4 cut(s)	148, 868, 1270, 1297
PleI	GAGTC	1 cut(s)	968
PpsI	GAGTC	1 cut(s)	968
Psp6I	CCWGG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	1089
PspPI	GGNCC	3 cut(s)	383, 446, 946
PsrI	GAACNNNNNNTAC	2 cut(s)	565, 597
RsaI	GTAC	3 cut(s)	574, 657, 792
RsaNI	GTAC	3 cut(s)	573, 656, 791
RseI	CAYNNNNRTG	2 cut(s)	553, 563
SaqAI	TTAA	4 cut(s)	353, 645, 1101, 1242
SatI	GCNGC	4 cut(s)	147, 867, 1269, 1296
Sau3AI	GATC	3 cut(s)	334, 699, 1201
Sau96I	GGNCC	3 cut(s)	383, 446, 946
SchI	GAGTC	1 cut(s)	969
ScrFI	CCNGG	1 cut(s)	130
SfaNI	GCATC	7 cut(s)	9, 338, 475, 519, 1048, 1070, 1282
SfcI	CTRYAG	2 cut(s)	34, 1285
SinI	GGWCC	1 cut(s)	946
SmiMI	CAYNNNNRTG	2 cut(s)	553, 563
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
Sse9I	AATT	6 cut(s)	202, 210, 616, 646, 786, 828
SsiI	CCGC	5 cut(s)	270, 419, 539, 783, 1013
SspMI	CTAG	3 cut(s)	651, 849, 891
StyD4I	CCNGG	1 cut(s)	128
StyI	CCWWGG	1 cut(s)	438
TaaI	ACNGT	2 cut(s)	403, 1121
TasI	AATT	6 cut(s)	202, 210, 616, 646, 786, 828
TatI	WGTACW	3 cut(s)	572, 655, 790
TfiI	GAWTC	5 cut(s)	175, 239, 262, 498, 1142
Tru1I	TTAA	4 cut(s)	353, 645, 1101, 1242
Tru9I	TTAA	4 cut(s)	353, 645, 1101, 1242
TscAI	CASTG	7 cut(s)	148, 225, 393, 406, 508, 876, 1126
TseFI	GTSAC	1 cut(s)	961
TseI	GCWGC	4 cut(s)	146, 866, 1268, 1295
Tsp45I	GTSAC	1 cut(s)	961
TspDTI	ATGAA	7 cut(s)	275, 294, 302, 639, 648, 685, 993
TspRI	CASTG	7 cut(s)	148, 225, 393, 406, 508, 876, 1126
VpaK11BI	GGWCC	1 cut(s)	946
XagI	CCTNNNNNAGG	1 cut(s)	1007
XapI	RAATTY	2 cut(s)	210, 616
XceI	RCATGY	1 cut(s)	1261
XspI	CTAG	3 cut(s)	651, 849, 891
Zsp2I	ATGCAT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.