Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003171

Physical Location & Seq

Genomic Coordinates Reverse (-)

54994748 .. 54998229

Gene Structure 3482 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009590

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGTTGCTTTGTCCTTGCCTTCCACCACCGCCTTCTTCTCAATCCGAACGCGGATTTTTGGCTTGCAAATCTTGCATGCACTTTTCATTTCTTCAAGAAATTCCATGCCCCCTCTTCCAAAGCTTTCTTCTACGGATGTGGTGGCACCGGCACCGGCACTGGTGCTGGCAGGGCCTGAATTCATGAGGCCAGGTTTCTTAAGGAACATGGTGAGCGTGTTTCGCCACCAATTAGGGTTTTCGACATGGAAAAGGATCAATTCGTCATTGTCAAAAACTGCTTTAGAAAGAGCATATTGGAGTGCACCTGCTGACTCTTGGGTTGGATCTGCCACCACCATTATTTTCCGTCCTGGCGGTGCACTTTTTCCACCACCTAGCATGACCCACGTATATCGGCACTACCATCAACCGCTACCAATTCCGGTTGCTGCTGCCGCCACCACATCAACAACGCCAAATGGTCAGCCAGGTGTTGAAACAGAGGAGTTTAATCTTGTGCCGGAACATGCTTATTCTGCTGTTGAGGAACGTTACAGAGAGATGCTGAAGATTTTAGAGCATTTAAAATCTCATATTTTCATGATCACTTGCAGCTCAATGGAGGGACAAACTCCTGCAACTTCGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

23.13

Weight (kDa)

9.3

Isoelectric Point (pI)

50.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19660 AT1G19660 AT1G19660 AT1G75380 AT1G75380 AT1G75380 AT1G75380
fragaria_vesca	FvH4_2g39410 FvH4_2g39410 FvH4_2g39410
malus_domestica	MD08G1026400.v1.1 MD15G1023200.v1.1
prunus_persica	Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0301571
rosa_laevigata	RLG00000009590 RLG00000011243
rosa_multiflora	Rmu_ssc0000452.1_g000006
rosa_roxburghii	Rroxscaffold_7G00166640
rosa_rugosa	Rorug06G0306400 Rorug06G0306500 Rorug06G0306500 Rorug06G0306600
rosa_samantha	Rh4AG062700 Rh4AG063700 Rh4BG062400 Rh4CG068700 Rh6AG419900 Rh6BG425900 Rh6CG432900 Rh6DG419200
rosa_wichuraiana	Rw6G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	316
Acc36I	ACCTGC	1 cut(s)	316
AccB1I	GGYRCC	2 cut(s)	145, 151
AccII	CGCG	1 cut(s)	52
AciI	CCGC	5 cut(s)	30, 52, 357, 413, 438
AclI	AACGTT	1 cut(s)	532
AclWI	GGATC	2 cut(s)	263, 334
AcsI	RAATTY	2 cut(s)	100, 179
AcuI	CTGAAG	1 cut(s)	569
AflII	CTTAAG	1 cut(s)	199
AgsI	TTSAA	2 cut(s)	96, 479
AjnI	CCWGG	3 cut(s)	190, 352, 469
AjuI	GAANNNNNNNTTGG	2 cut(s)	112, 144
AluBI	AGCT	2 cut(s)	124, 597
AluI	AGCT	2 cut(s)	124, 597
Alw21I	GWGCWC	2 cut(s)	307, 364
Alw44I	GTGCAC	2 cut(s)	303, 360
AlwI	GGATC	2 cut(s)	263, 334
AlwNI	CAGNNNCTG	1 cut(s)	176
AoxI	GGCC	2 cut(s)	173, 188
ApaLI	GTGCAC	2 cut(s)	303, 360
ApeKI	GCWGC	3 cut(s)	431, 434, 594
ApoI	RAATTY	2 cut(s)	100, 179
AspS9I	GGNCC	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	223
BaeGI	GKGCMC	2 cut(s)	307, 364
BanI	GGYRCC	2 cut(s)	145, 151
Bbv12I	GWGCWC	2 cut(s)	307, 364
BbvI	GCAGC	3 cut(s)	418, 421, 606
BccI	CCATC	1 cut(s)	414
BciT130I	CCWGG	3 cut(s)	192, 354, 471
BclI	TGATCA	1 cut(s)	585
BfaI	CTAG	1 cut(s)	378
BfrI	CTTAAG	1 cut(s)	199
BfuAI	ACCTGC	1 cut(s)	316
BisI	GCNGC	4 cut(s)	432, 435, 438, 595
BlsI	GCNGC	4 cut(s)	433, 436, 439, 596
Bme1390I	CCNGG	3 cut(s)	192, 354, 471
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	2 cut(s)	147, 153
BmrFI	CCNGG	3 cut(s)	192, 354, 471
BmsI	GCATC	1 cut(s)	534
BsaAI	YACGTR	1 cut(s)	391
BsaWI	WCCGGW	1 cut(s)	424
Bse118I	RCCGGY	2 cut(s)	148, 154
Bse1I	ACTGG	1 cut(s)	165
BseBI	CCWGG	3 cut(s)	192, 354, 471
BseGI	GGATG	1 cut(s)	142
BseNI	ACTGG	1 cut(s)	165
BseRI	GAGGAG	1 cut(s)	500
BseSI	GKGCMC	2 cut(s)	307, 364
BseXI	GCAGC	3 cut(s)	418, 421, 606
Bsh1236I	CGCG	1 cut(s)	52
BshFI	GGCC	2 cut(s)	175, 190
BshNI	GGYRCC	2 cut(s)	145, 151
BsiHKAI	GWGCWC	2 cut(s)	307, 364
BsiSI	CCGG	4 cut(s)	149, 155, 425, 503
BslFI	GGGAC	1 cut(s)	621
BsmFI	GGGAC	1 cut(s)	621
BsnI	GGCC	2 cut(s)	175, 190
Bsp1286I	GDGCHC	2 cut(s)	307, 364
Bsp143I	GATC	3 cut(s)	255, 326, 585
BspACI	CCGC	5 cut(s)	30, 52, 357, 413, 438
BspANI	GGCC	2 cut(s)	175, 190
BspFNI	CGCG	1 cut(s)	52
BspHI	TCATGA	2 cut(s)	183, 582
BspLI	GGNNCC	2 cut(s)	147, 153
BspMI	ACCTGC	1 cut(s)	316
BspPI	GGATC	2 cut(s)	263, 334
BspT107I	GGYRCC	2 cut(s)	145, 151
BspTI	CTTAAG	1 cut(s)	199
BsrFI	RCCGGY	2 cut(s)	148, 154
BsrI	ACTGG	1 cut(s)	165
BssAI	RCCGGY	2 cut(s)	148, 154
BssMI	GATC	3 cut(s)	255, 326, 585
Bst2UI	CCWGG	3 cut(s)	192, 354, 471
Bst6I	CTCTTC	1 cut(s)	120
BstAFI	CTTAAG	1 cut(s)	199
BstAPI	GCANNNNNTGC	1 cut(s)	73
BstBAI	YACGTR	1 cut(s)	391
BstC8I	GCNNGC	3 cut(s)	65, 78, 168
BstF5I	GGATG	1 cut(s)	142
BstFNI	CGCG	1 cut(s)	52
BstKTI	GATC	3 cut(s)	258, 329, 588
BstMBI	GATC	3 cut(s)	255, 326, 585
BstMWI	GCNNNNNNNGC	5 cut(s)	73, 172, 222, 437, 518
BstNI	CCWGG	3 cut(s)	192, 354, 471
BstNSI	RCATGY	2 cut(s)	80, 512
BstSCI	CCNGG	3 cut(s)	190, 352, 469
BstSLI	GKGCMC	2 cut(s)	307, 364
BstUI	CGCG	1 cut(s)	52
BstV1I	GCAGC	3 cut(s)	418, 421, 606
BstX2I	RGATCY	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	326
BsuRI	GGCC	2 cut(s)	175, 190
BtsCI	GGATG	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	158
BveI	ACCTGC	1 cut(s)	316
Cac8I	GCNNGC	3 cut(s)	65, 78, 168
CaiI	CAGNNNCTG	1 cut(s)	176
CciI	TCATGA	2 cut(s)	183, 582
Cfr10I	RCCGGY	2 cut(s)	148, 154
Cfr13I	GGNCC	1 cut(s)	173
CviAII	CATG	8 cut(s)	77, 106, 184, 208, 246, 382, 509, 583
CviJI	RGCY	6 cut(s)	63, 124, 175, 190, 469, 597
CviKI_1	RGCY	6 cut(s)	63, 124, 175, 190, 469, 597
DpnI	GATC	3 cut(s)	257, 328, 587
DpnII	GATC	3 cut(s)	255, 326, 585
DraI	TTTAAA	1 cut(s)	567
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	569
EcoO109I	RGGNCCY	1 cut(s)	173
EcoRI	GAATTC	1 cut(s)	179
EcoRII	CCWGG	3 cut(s)	190, 352, 469
FaeI	CATG	8 cut(s)	80, 109, 187, 211, 249, 385, 512, 586
FaqI	GGGAC	1 cut(s)	621
FatI	CATG	8 cut(s)	76, 105, 183, 207, 245, 381, 508, 582
FbaI	TGATCA	1 cut(s)	585
Fnu4HI	GCNGC	4 cut(s)	432, 435, 438, 595
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	4 cut(s)	432, 435, 438, 595
FspBI	CTAG	1 cut(s)	378
GluI	GCNGC	4 cut(s)	432, 435, 438, 595
HaeIII	GGCC	2 cut(s)	175, 190
HapII	CCGG	4 cut(s)	149, 155, 425, 503
Hin1II	CATG	8 cut(s)	80, 109, 187, 211, 249, 385, 512, 586
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	4 cut(s)	149, 155, 425, 503
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	2 cut(s)	305, 362
Hpy188I	TCNGA	1 cut(s)	47
Hpy188III	TCNNGA	3 cut(s)	96, 184, 583
Hpy8I	GTNNAC	2 cut(s)	305, 362
HpyAV	CCTTC	2 cut(s)	30, 43
HpyCH4IV	ACGT	2 cut(s)	390, 532
HpyCH4V	TGCA	7 cut(s)	67, 76, 80, 305, 362, 594, 620
HpyF10VI	GCNNNNNNNGC	5 cut(s)	73, 172, 222, 437, 518
HpySE526I	ACGT	2 cut(s)	390, 532
Hsp92II	CATG	8 cut(s)	80, 109, 187, 211, 249, 385, 512, 586
Ksp22I	TGATCA	1 cut(s)	585
Kzo9I	GATC	3 cut(s)	255, 326, 585
Lsp1109I	GCAGC	3 cut(s)	418, 421, 606
LweI	GCATC	1 cut(s)	534
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	2 cut(s)	390, 532
MaeIII	GTNAC	1 cut(s)	533
MalI	GATC	3 cut(s)	257, 328, 587
MboI	GATC	3 cut(s)	255, 326, 585
MboII	GAAGA	5 cut(s)	28, 84, 107, 120, 562
MflI	RGATCY	1 cut(s)	326
MhlI	GDGCHC	2 cut(s)	307, 364
MluCI	AATT	5 cut(s)	100, 179, 230, 259, 420
MlyI	GAGTC	1 cut(s)	308
MmeI	TCCRAC	1 cut(s)	304
MnlI	CCTC	5 cut(s)	123, 180, 478, 520, 598
MseI	TTAA	3 cut(s)	200, 492, 566
MspCI	CTTAAG	1 cut(s)	199
MspI	CCGG	4 cut(s)	149, 155, 425, 503
MspR9I	CCNGG	3 cut(s)	192, 354, 471
MvaI	CCWGG	3 cut(s)	192, 354, 471
MvnI	CGCG	1 cut(s)	52
MwoI	GCNNNNNNNGC	5 cut(s)	73, 172, 222, 437, 518
NdeII	GATC	3 cut(s)	255, 326, 585
NlaIII	CATG	8 cut(s)	80, 109, 187, 211, 249, 385, 512, 586
NlaIV	GGNNCC	2 cut(s)	147, 153
NspI	RCATGY	2 cut(s)	80, 512
PaeI	GCATGC	1 cut(s)	80
PagI	TCATGA	2 cut(s)	183, 582
PaqCI	CACCTGC	1 cut(s)	316
PkrI	GCNGC	4 cut(s)	433, 436, 439, 596
PleI	GAGTC	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	308
Ppu21I	YACGTR	1 cut(s)	391
Psp1406I	AACGTT	1 cut(s)	532
Psp6I	CCWGG	3 cut(s)	190, 352, 469
PspGI	CCWGG	3 cut(s)	190, 352, 469
PspN4I	GGNNCC	2 cut(s)	147, 153
PspPI	GGNCC	1 cut(s)	173
PstNI	CAGNNNCTG	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	326
SaqAI	TTAA	3 cut(s)	200, 492, 566
SatI	GCNGC	4 cut(s)	432, 435, 438, 595
Sau3AI	GATC	3 cut(s)	255, 326, 585
Sau96I	GGNCC	1 cut(s)	173
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	3 cut(s)	192, 354, 471
SduI	GDGCHC	2 cut(s)	307, 364
SetI	ASST	8 cut(s)	126, 196, 310, 379, 393, 475, 535, 599
SfaNI	GCATC	1 cut(s)	534
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
SphI	GCATGC	1 cut(s)	80
Sse9I	AATT	5 cut(s)	100, 179, 230, 259, 420
SsiI	CCGC	5 cut(s)	30, 52, 357, 413, 438
SspMI	CTAG	1 cut(s)	378
StyD4I	CCNGG	3 cut(s)	190, 352, 469
TaiI	ACGT	2 cut(s)	393, 535
TaqI	TCGA	1 cut(s)	242
TasI	AATT	5 cut(s)	100, 179, 230, 259, 420
TauI	GCSGC	1 cut(s)	440
Tru1I	TTAA	3 cut(s)	200, 492, 566
Tru9I	TTAA	3 cut(s)	200, 492, 566
TscAI	CASTG	1 cut(s)	165
TseI	GCWGC	3 cut(s)	431, 434, 594
TspDTI	ATGAA	3 cut(s)	76, 172, 571
TspGWI	ACGGA	2 cut(s)	149, 338
TspRI	CASTG	1 cut(s)	165
Vha464I	CTTAAG	1 cut(s)	199
VneI	GTGCAC	2 cut(s)	303, 360
XapI	RAATTY	2 cut(s)	100, 179
XceI	RCATGY	2 cut(s)	80, 512
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.