Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003171

Physical Location & Seq

Genomic Coordinates Forward (+)

34041329 .. 34045668

Gene Structure 4340 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G375100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGTTTCTTTGCAAGGGCCAGTAATTTGCCCCACTGTTCGCGCAAAGCAATCGGGGTATGACACTGTGCCAGTGGTAGGCCCTTTGGTGAAGGCTAGGCTTCTTAGAAGTGAATTATGTAGATTCAGAGGGGTCAGCGGTTGCATCACAAAGGCGGGTTTTGTTTCTCGCCCTCAAAATGCACGAAAATGCACAAGAGTGCATTGTACTTTCAGTTCTTCATCAAATGGTAATGGAAGTATGGCCGAGAATTTCAATGAAAATGATGAAGATTATGTCAACTCCAGTGTACTTGAAGCTGTTGAGGTGAAGAGTGGAATTGATGGATTCATGATCAAAATGAGGGATGGTAGGCACATGAGGTGTGTCCATAACAACCCTCAGGGGGGCCATCTTCCCGATTATGCTCCACATCCTGCAATTGTGTTGAAGATGGAAGATGGGACTGGTCTTCTTCTCCCAATAATTGTTTTGGAGATGCCCAGTGTGTTGCTCATGGCAGCAGTGCGCAATGTTCCAATTGCTAGGCCAACTATGTATCAAGTGGTCAGGGAGATGATTGACAAGATGGGTTATGAGGTCCGACTTGTCAGAGTCACCAAGAGAGTACATGAGGCATATTTTGCTCAGTTATACCTCAGAAAGGCTGGTAGTGAGACAGAGTGTGTCAGCTTCGACCTTCGGCCTTCAGATGCCATCAACATTGCTGTAAGATGCAAGGTTCCCATACAAGTCAACAAGTACCTGGCATATAGTGATGGAATGAGAGTTATCGAATCTGGAAAGCTCTCAAGTCATGGCCCTGCTTCAGATGGTTTATTATTTACTGAGCTGGATCGGCCGAGTGGTCAACCATGTGTTGAAACAAAGGAGTTTAATCTTGTGCGCAACATGTTAATTGCTGCAGTTGAGGAACGCTATAGAGATGCTGCTCAGTGGAGGGACAAACTCCTCCAACTTCGTGCTAGAAGGAATTTGGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043207 GO:0043565 GO:0044237 GO:0044238 GO:0046483 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0098542 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNase-RNase UVR

Protein Analysis

328

Amino Acids

36.44

Weight (kDa)

9.2

Isoelectric Point (pI)

48.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19660 AT1G19660 AT1G19660 AT1G75380 AT1G75380 AT1G75380 AT1G75380
fragaria_vesca	FvH4_2g39410 FvH4_2g39410 FvH4_2g39410
malus_domestica	MD08G1026400.v1.1 MD15G1023200.v1.1
prunus_persica	Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0301571
rosa_laevigata	RLG00000009590 RLG00000011243
rosa_multiflora	Rmu_ssc0000452.1_g000006
rosa_roxburghii	Rroxscaffold_7G00166640
rosa_rugosa	Rorug06G0306400 Rorug06G0306500 Rorug06G0306500 Rorug06G0306600
rosa_samantha	Rh4AG062700 Rh4AG063700 Rh4BG062400 Rh4CG068700 Rh6AG419900 Rh6BG425900 Rh6CG432900 Rh6DG419200
rosa_wichuraiana	Rw6G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	509, 887
AccII	CGCG	1 cut(s)	42
AciI	CCGC	2 cut(s)	138, 155
AclWI	GGATC	1 cut(s)	843
AcoI	YGGCCR	2 cut(s)	243, 839
AcsI	RAATTY	2 cut(s)	250, 973
AcuI	CTGAAG	2 cut(s)	672, 792
AfaI	GTAC	4 cut(s)	208, 291, 609, 743
AfiI	CCNNNNNNNGG	4 cut(s)	77, 385, 386, 643
AflIII	ACRYGT	1 cut(s)	891
AgsI	TTSAA	4 cut(s)	256, 296, 430, 863
AjnI	CCWGG	1 cut(s)	744
AleI	CACNNNNGTG	1 cut(s)	197
AluBI	AGCT	4 cut(s)	299, 672, 787, 832
AluI	AGCT	4 cut(s)	299, 672, 787, 832
Alw26I	GTCTC	1 cut(s)	650
AlwI	GGATC	1 cut(s)	843
AoxI	GGCC	8 cut(s)	17, 79, 243, 388, 527, 683, 799, 839
ApeKI	GCWGC	3 cut(s)	500, 902, 929
ApoI	RAATTY	2 cut(s)	250, 973
AspLEI	GCGC	3 cut(s)	44, 510, 888
AspS9I	GGNCC	5 cut(s)	17, 80, 388, 580, 800
AsuHPI	GGTGA	3 cut(s)	100, 319, 589
AvaII	GGWCC	1 cut(s)	580
AxyI	CCTNAGG	1 cut(s)	381
BbsI	GAAGAC	1 cut(s)	443
BbvI	GCAGC	3 cut(s)	512, 889, 916
BccI	CCATC	9 cut(s)	317, 341, 399, 427, 434, 562, 704, 752, 806
BcgI	CGANNNNNNTGC	2 cut(s)	33, 67
BciT130I	CCWGG	1 cut(s)	746
BclI	TGATCA	1 cut(s)	333
BcoDI	GTCTC	1 cut(s)	650
BfaI	CTAG	3 cut(s)	96, 525, 966
BfmI	CTRYAG	2 cut(s)	903, 919
BisI	GCNGC	3 cut(s)	501, 903, 930
BlsI	GCNGC	3 cut(s)	502, 904, 931
Bme1390I	CCNGG	1 cut(s)	746
Bme18I	GGWCC	1 cut(s)	580
BmgT120I	GGNCC	5 cut(s)	17, 80, 388, 580, 800
BmiI	GGNNCC	2 cut(s)	389, 723
BmrFI	CCNGG	1 cut(s)	746
BmrI	ACTGGG	1 cut(s)	477
BmsI	GCATC	5 cut(s)	153, 468, 682, 704, 916
BmuI	ACTGGG	1 cut(s)	477
BpiI	GAAGAC	1 cut(s)	443
BpmI	CTGGAG	1 cut(s)	268
BpuEI	CTTGAG	1 cut(s)	775
Bsc4I	CCNNNNNNNGG	4 cut(s)	77, 385, 386, 643
Bse1I	ACTGG	5 cut(s)	20, 71, 285, 451, 483
Bse21I	CCTNAGG	1 cut(s)	381
Bse3DI	GCAATG	2 cut(s)	517, 702
BseBI	CCWGG	1 cut(s)	746
BseGI	GGATG	2 cut(s)	352, 412
BseLI	CCNNNNNNNGG	4 cut(s)	77, 385, 386, 643
BseMI	GCAATG	2 cut(s)	517, 702
BseMII	CTCAG	5 cut(s)	395, 641, 652, 819, 947
BseNI	ACTGG	5 cut(s)	20, 71, 285, 451, 483
BseRI	GAGGAG	1 cut(s)	941
BseX3I	CGGCCG	1 cut(s)	839
BseXI	GCAGC	3 cut(s)	512, 889, 916
Bsh1236I	CGCG	1 cut(s)	42
Bsh1285I	CGRYCG	1 cut(s)	842
BshFI	GGCC	8 cut(s)	19, 81, 245, 390, 529, 685, 801, 841
BsiEI	CGRYCG	1 cut(s)	842
BslFI	GGGAC	2 cut(s)	457, 956
BslI	CCNNNNNNNGG	4 cut(s)	77, 385, 386, 643
BsmAI	GTCTC	1 cut(s)	650
BsmFI	GGGAC	2 cut(s)	457, 956
BsnI	GGCC	8 cut(s)	19, 81, 245, 390, 529, 685, 801, 841
Bsp143I	GATC	2 cut(s)	333, 835
BspACI	CCGC	2 cut(s)	138, 155
BspANI	GGCC	8 cut(s)	19, 81, 245, 390, 529, 685, 801, 841
BspCNI	CTCAG	5 cut(s)	394, 640, 651, 820, 946
BspFNI	CGCG	1 cut(s)	42
BspHI	TCATGA	1 cut(s)	330
BspLI	GGNNCC	2 cut(s)	389, 723
BspMAI	CTGCAG	1 cut(s)	907
BspPI	GGATC	1 cut(s)	843
BsrDI	GCAATG	2 cut(s)	517, 702
BsrI	ACTGG	5 cut(s)	20, 71, 285, 451, 483
BssMI	GATC	2 cut(s)	333, 835
Bst2UI	CCWGG	1 cut(s)	746
Bst4CI	ACNGT	2 cut(s)	37, 67
Bst6I	CTCTTC	1 cut(s)	305
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstDEI	CTNAG	6 cut(s)	104, 381, 627, 638, 828, 933
BstENI	CCTNNNNNAGG	1 cut(s)	641
BstF5I	GGATG	2 cut(s)	352, 412
BstFNI	CGCG	1 cut(s)	42
BstHHI	GCGC	3 cut(s)	44, 510, 888
BstKTI	GATC	2 cut(s)	336, 838
BstMAI	GTCTC	1 cut(s)	650
BstMBI	GATC	2 cut(s)	333, 835
BstMCI	CGRYCG	1 cut(s)	842
BstMWI	GCNNNNNNNGC	2 cut(s)	623, 838
BstNI	CCWGG	1 cut(s)	746
BstNSI	RCATGY	1 cut(s)	895
BstSCI	CCNGG	1 cut(s)	744
BstSFI	CTRYAG	2 cut(s)	903, 919
BstUI	CGCG	1 cut(s)	42
BstV1I	GCAGC	3 cut(s)	512, 889, 916
BstV2I	GAAGAC	1 cut(s)	443
BstZI	CGGCCG	1 cut(s)	839
Bsu36I	CCTNAGG	1 cut(s)	381
BsuRI	GGCC	8 cut(s)	19, 81, 245, 390, 529, 685, 801, 841
BtsCI	GGATG	2 cut(s)	352, 412
BtsI	GCAGTG	1 cut(s)	510
BtsIMutI	CAGTG	7 cut(s)	33, 63, 78, 292, 490, 510, 941
CciI	TCATGA	1 cut(s)	330
CfoI	GCGC	3 cut(s)	44, 510, 888
Cfr13I	GGNCC	5 cut(s)	17, 80, 388, 580, 800
Csp6I	GTAC	4 cut(s)	207, 290, 608, 742
CviAII	CATG	7 cut(s)	331, 358, 496, 611, 797, 855, 892
CviQI	GTAC	4 cut(s)	207, 290, 608, 742
DdeI	CTNAG	6 cut(s)	104, 381, 627, 638, 828, 933
DpnI	GATC	2 cut(s)	335, 837
DpnII	GATC	2 cut(s)	333, 835
EaeI	YGGCCR	2 cut(s)	243, 839
EagI	CGGCCG	1 cut(s)	839
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
EclXI	CGGCCG	1 cut(s)	839
Eco47I	GGWCC	1 cut(s)	580
Eco52I	CGGCCG	1 cut(s)	839
Eco57I	CTGAAG	2 cut(s)	672, 792
Eco81I	CCTNAGG	1 cut(s)	381
EcoNI	CCTNNNNNAGG	1 cut(s)	641
EcoO109I	RGGNCCY	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	744
FaeI	CATG	7 cut(s)	334, 361, 499, 614, 800, 858, 895
FaqI	GGGAC	2 cut(s)	457, 956
FatI	CATG	7 cut(s)	330, 357, 495, 610, 796, 854, 891
FauI	CCCGC	1 cut(s)	148
FbaI	TGATCA	1 cut(s)	333
Fnu4HI	GCNGC	3 cut(s)	501, 903, 930
FokI	GGATG	2 cut(s)	359, 399
Fsp4HI	GCNGC	3 cut(s)	501, 903, 930
FspBI	CTAG	3 cut(s)	96, 525, 966
FspI	TGCGCA	2 cut(s)	509, 887
GlaI	GCGC	3 cut(s)	43, 509, 887
GluI	GCNGC	3 cut(s)	501, 903, 930
GsuI	CTGGAG	1 cut(s)	268
HaeIII	GGCC	8 cut(s)	19, 81, 245, 390, 529, 685, 801, 841
HhaI	GCGC	3 cut(s)	44, 510, 888
Hin1II	CATG	7 cut(s)	334, 361, 499, 614, 800, 858, 895
Hin6I	GCGC	3 cut(s)	42, 508, 886
HinP1I	GCGC	3 cut(s)	42, 508, 886
HincII	GTYRAC	3 cut(s)	280, 736, 851
HindII	GTYRAC	3 cut(s)	280, 736, 851
HinfI	GANTC	4 cut(s)	123, 327, 594, 776
HphI	GGTGA	3 cut(s)	100, 319, 589
Hpy166II	GTNNAC	4 cut(s)	280, 290, 736, 851
Hpy188I	TCNGA	6 cut(s)	128, 584, 593, 641, 691, 811
Hpy188III	TCNNGA	3 cut(s)	331, 398, 780
Hpy8I	GTNNAC	4 cut(s)	280, 290, 736, 851
HpyAV	CCTTC	4 cut(s)	85, 689, 696, 963
HpyCH4III	ACNGT	2 cut(s)	37, 67
HpyCH4V	TGCA	8 cut(s)	13, 144, 182, 192, 202, 419, 717, 905
HpyF10VI	GCNNNNNNNGC	2 cut(s)	623, 838
HpyF3I	CTNAG	6 cut(s)	104, 381, 627, 638, 828, 933
Hsp92II	CATG	7 cut(s)	334, 361, 499, 614, 800, 858, 895
HspAI	GCGC	3 cut(s)	42, 508, 886
Ksp22I	TGATCA	1 cut(s)	333
Kzo9I	GATC	2 cut(s)	333, 835
LmnI	GCTCC	1 cut(s)	412
Lsp1109I	GCAGC	3 cut(s)	512, 889, 916
LweI	GCATC	5 cut(s)	153, 468, 682, 704, 916
MaeI	CTAG	3 cut(s)	96, 525, 966
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	2 cut(s)	335, 837
MboI	GATC	2 cut(s)	333, 835
MboII	GAAGA	8 cut(s)	210, 281, 322, 386, 442, 443, 446, 449
MfeI	CAATTG	2 cut(s)	420, 519
MluCI	AATT	9 cut(s)	24, 113, 250, 318, 420, 465, 519, 897, 973
MlyI	GAGTC	1 cut(s)	603
MmeI	TCCRAC	2 cut(s)	607, 979
MseI	TTAA	2 cut(s)	876, 896
MslI	CAYNNNNRTG	2 cut(s)	187, 197
MspA1I	CMGCKG	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	746
MunI	CAATTG	2 cut(s)	420, 519
MvaI	CCWGG	1 cut(s)	746
MvnI	CGCG	1 cut(s)	42
MwoI	GCNNNNNNNGC	2 cut(s)	623, 838
NdeII	GATC	2 cut(s)	333, 835
NlaIII	CATG	7 cut(s)	334, 361, 499, 614, 800, 858, 895
NlaIV	GGNNCC	2 cut(s)	389, 723
NmeAIII	GCCGAG	2 cut(s)	271, 867
NmuCI	GTSAC	1 cut(s)	595
NsbI	TGCGCA	2 cut(s)	509, 887
NspI	RCATGY	1 cut(s)	895
OliI	CACNNNNGTG	1 cut(s)	197
PagI	TCATGA	1 cut(s)	330
PciI	ACATGT	1 cut(s)	891
PfeI	GAWTC	3 cut(s)	123, 327, 776
PkrI	GCNGC	3 cut(s)	502, 904, 931
PleI	GAGTC	1 cut(s)	602
PpsI	GAGTC	1 cut(s)	602
PscI	ACATGT	1 cut(s)	891
Psp6I	CCWGG	1 cut(s)	744
PspGI	CCWGG	1 cut(s)	744
PspN4I	GGNNCC	2 cut(s)	389, 723
PspPI	GGNCC	5 cut(s)	17, 80, 388, 580, 800
PsrI	GAACNNNNNNTAC	2 cut(s)	199, 231
PstI	CTGCAG	1 cut(s)	907
RsaI	GTAC	4 cut(s)	208, 291, 609, 743
RsaNI	GTAC	4 cut(s)	207, 290, 608, 742
RseI	CAYNNNNRTG	2 cut(s)	187, 197
SaqAI	TTAA	2 cut(s)	876, 896
SatI	GCNGC	3 cut(s)	501, 903, 930
Sau3AI	GATC	2 cut(s)	333, 835
Sau96I	GGNCC	5 cut(s)	17, 80, 388, 580, 800
SchI	GAGTC	1 cut(s)	603
ScrFI	CCNGG	1 cut(s)	746
SfaNI	GCATC	5 cut(s)	153, 468, 682, 704, 916
SfcI	CTRYAG	2 cut(s)	903, 919
SinI	GGWCC	1 cut(s)	580
SmiMI	CAYNNNNRTG	2 cut(s)	187, 197
SmlI	CTYRAG	1 cut(s)	790
SmoI	CTYRAG	1 cut(s)	790
Sse9I	AATT	9 cut(s)	24, 113, 250, 318, 420, 465, 519, 897, 973
SsiI	CCGC	2 cut(s)	138, 155
SspMI	CTAG	3 cut(s)	96, 525, 966
StyD4I	CCNGG	1 cut(s)	744
TaaI	ACNGT	2 cut(s)	37, 67
TaqI	TCGA	2 cut(s)	675, 774
TasI	AATT	9 cut(s)	24, 113, 250, 318, 420, 465, 519, 897, 973
TatI	WGTACW	3 cut(s)	206, 289, 607
TfiI	GAWTC	3 cut(s)	123, 327, 776
Tru1I	TTAA	2 cut(s)	876, 896
Tru9I	TTAA	2 cut(s)	876, 896
TscAI	CASTG	7 cut(s)	40, 70, 78, 292, 490, 510, 941
TseFI	GTSAC	1 cut(s)	595
TseI	GCWGC	3 cut(s)	500, 902, 929
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	4 cut(s)	210, 273, 282, 319
TspRI	CASTG	7 cut(s)	40, 70, 78, 292, 490, 510, 941
VpaK11BI	GGWCC	1 cut(s)	580
XagI	CCTNNNNNAGG	1 cut(s)	641
XapI	RAATTY	2 cut(s)	250, 973
XceI	RCATGY	1 cut(s)	895
XspI	CTAG	3 cut(s)	96, 525, 966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.