Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003171

Physical Location & Seq

Genomic Coordinates Forward (+)

8026195 .. 8030070

Gene Structure 3876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00166640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGATGGGGTCTTTGCAAGGGCCAGTGATTTGCCCCACTGTCAGCGCAAAGCAAGCGGGTTCTTACAATCTGCCCATGGTAGGCCCTCTGTTGAAGGTCAGGCATCTGAGAAGTGAGCTATGGGGATTGAAGGGAATCAGTGGTTGCATCACTAAGGCCGGCTTTGCTGCTCGCCCGCAAAATGCACGAAAATGCACAAGAGTGCTTTGTACTTTCAGTTCTTCGTCAAATGGGAATGGAAGCATGGCAGAGAATTTCAATGAAAATGATGAAGACTATGTTAATTCTAGTGTACTTGAGGCCGTTGAGGTGAAGAGTGGAGCTGATGGGTTCATGATCAAAATGAGGGATGGCAGGCACATGAGGTGTGTCCATAACAACCCTCAGGGTGGCCATCTGCCAGACTATGCTCCACATCCTGCAATTGTACTGAAGATGGAAGATGGGACTGGCCTTCTTCTCCCAATTATTGTTTTGGAAATGCCTAGTGTGTTGCTCATGGCAGCAGTGCGCAATGTTCCTATTGCTAGGCCAACTATGTATCAAGTGGTGAGGGAAATGATTGACAAGATGGGCTATGAGGTCCAACTTGTTAGAGTCACTAAGAGAGTGCATGAAGCATATTTTGCTCAGTTATACCTCAGAAAGGCGGGTAGTGAAACAGAGTTTGTCAGCTTTGACCTTCGGCCTTCAGATGCCATCAACATTGCTGTAAGATGCAAGGTTCCCATACAAGTTAACAAGTATCTGGCATACAGTGATGGGATGAGAGTTATTGAATCTGGAAAGCTCTCTACGCATACCCCTGCTTCAGATGGCTTATTGTTTACTGAACTGGATCGGCCAAATGGTAAGCCATGTGTTGAGACAAAGGAGTTTAATCTTGTGCGAAACATGCTTATTGCTGCTGTTGAAGAACGCTACAGAGATGCTGCTCAATGGAGGGACAAGCTCCTCCAACTTCGTGCTAAAAAGAACTTGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043207 GO:0043565 GO:0044237 GO:0044238 GO:0046483 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0098542 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNase-RNase UVR

Protein Analysis

328

Amino Acids

36.41

Weight (kDa)

9.18

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BFN_dom	PF02577	142 - 254	3.3e-21	Bifunctional nuclease domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19660 AT1G19660 AT1G19660 AT1G75380 AT1G75380 AT1G75380 AT1G75380
fragaria_vesca	FvH4_2g39410 FvH4_2g39410 FvH4_2g39410
malus_domestica	MD08G1026400.v1.1 MD15G1023200.v1.1
prunus_persica	Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0301571
rosa_laevigata	RLG00000009590 RLG00000011243
rosa_multiflora	Rmu_ssc0000452.1_g000006
rosa_roxburghii	Rroxscaffold_7G00166640
rosa_rugosa	Rorug06G0306400 Rorug06G0306500 Rorug06G0306500 Rorug06G0306600
rosa_samantha	Rh4AG062700 Rh4AG063700 Rh4BG062400 Rh4CG068700 Rh6AG419900 Rh6BG425900 Rh6CG432900 Rh6DG419200
rosa_wichuraiana	Rw6G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	512
AciI	CCGC	3 cut(s)	56, 176, 650
AclWI	GGATC	1 cut(s)	846
AcoI	YGGCCR	2 cut(s)	391, 842
AcsI	RAATTY	1 cut(s)	253
AcuI	CTGAAG	3 cut(s)	452, 675, 795
AfaI	GTAC	3 cut(s)	211, 294, 429
AfiI	CCNNNNNNNGG	3 cut(s)	80, 389, 646
AgsI	TTSAA	5 cut(s)	94, 130, 259, 779, 914
AleI	CACNNNNGTG	1 cut(s)	200
AluBI	AGCT	5 cut(s)	118, 323, 675, 790, 952
AluI	AGCT	5 cut(s)	118, 323, 675, 790, 952
Alw26I	GTCTC	1 cut(s)	860
AlwI	GGATC	1 cut(s)	846
AoxI	GGCC	9 cut(s)	20, 82, 156, 300, 391, 451, 530, 686, 842
ApeKI	GCWGC	4 cut(s)	167, 503, 905, 932
ApoI	RAATTY	1 cut(s)	253
AspLEI	GCGC	2 cut(s)	47, 513
AspS9I	GGNCC	3 cut(s)	20, 83, 583
AsuHPI	GGTGA	2 cut(s)	322, 562
AvaII	GGWCC	1 cut(s)	583
AxyI	CCTNAGG	1 cut(s)	384
BalI	TGGCCA	1 cut(s)	393
BbsI	GAAGAC	1 cut(s)	279
BbvI	GCAGC	4 cut(s)	154, 515, 892, 919
BccI	CCATC	9 cut(s)	320, 344, 402, 430, 437, 565, 707, 755, 809
BceAI	ACGGC	1 cut(s)	287
BclI	TGATCA	1 cut(s)	336
BcoDI	GTCTC	1 cut(s)	860
BfaI	CTAG	3 cut(s)	288, 486, 528
BfmI	CTRYAG	1 cut(s)	922
BisI	GCNGC	4 cut(s)	168, 504, 906, 933
BlsI	GCNGC	4 cut(s)	169, 505, 907, 934
Bme18I	GGWCC	1 cut(s)	583
BmgT120I	GGNCC	3 cut(s)	20, 83, 583
BmiI	GGNNCC	1 cut(s)	726
BmsI	GCATC	5 cut(s)	112, 156, 685, 707, 919
BpiI	GAAGAC	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 389, 646
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	3 cut(s)	23, 454, 840
Bse21I	CCTNAGG	1 cut(s)	384
Bse3DI	GCAATG	2 cut(s)	520, 705
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	3 cut(s)	355, 415, 771
BseLI	CCNNNNNNNGG	3 cut(s)	80, 389, 646
BseMI	GCAATG	2 cut(s)	520, 705
BseMII	CTCAG	4 cut(s)	98, 398, 644, 655
BseNI	ACTGG	3 cut(s)	23, 454, 840
BseRI	GAGGAG	1 cut(s)	944
BseXI	GCAGC	4 cut(s)	154, 515, 892, 919
BshFI	GGCC	9 cut(s)	22, 84, 158, 302, 393, 453, 532, 688, 844
BsiSI	CCGG	1 cut(s)	159
BslFI	GGGAC	2 cut(s)	460, 959
BslI	CCNNNNNNNGG	3 cut(s)	80, 389, 646
BsmAI	GTCTC	1 cut(s)	860
BsmFI	GGGAC	2 cut(s)	460, 959
BsnI	GGCC	9 cut(s)	22, 84, 158, 302, 393, 453, 532, 688, 844
Bsp143I	GATC	2 cut(s)	336, 838
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	3 cut(s)	56, 176, 650
BspANI	GGCC	9 cut(s)	22, 84, 158, 302, 393, 453, 532, 688, 844
BspCNI	CTCAG	4 cut(s)	99, 397, 643, 654
BspHI	TCATGA	1 cut(s)	333
BspLI	GGNNCC	1 cut(s)	726
BspPI	GGATC	1 cut(s)	846
BsrDI	GCAATG	2 cut(s)	520, 705
BsrFI	RCCGGY	1 cut(s)	158
BsrI	ACTGG	3 cut(s)	23, 454, 840
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	2 cut(s)	336, 838
BssT1I	CCWWGG	1 cut(s)	75
Bst4CI	ACNGT	2 cut(s)	40, 758
Bst6I	CTCTTC	1 cut(s)	308
BstAPI	GCANNNNNTGC	1 cut(s)	626
BstC8I	GCNNGC	5 cut(s)	54, 160, 172, 176, 356
BstDEI	CTNAG	6 cut(s)	107, 153, 384, 603, 630, 641
BstDSI	CCRYGG	1 cut(s)	75
BstENI	CCTNNNNNAGG	1 cut(s)	644
BstF5I	GGATG	3 cut(s)	355, 415, 771
BstHHI	GCGC	2 cut(s)	47, 513
BstKTI	GATC	2 cut(s)	339, 841
BstMAI	GTCTC	1 cut(s)	860
BstMBI	GATC	2 cut(s)	336, 838
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 164, 626, 796, 895
BstNSI	RCATGY	1 cut(s)	898
BstSFI	CTRYAG	1 cut(s)	922
BstV1I	GCAGC	4 cut(s)	154, 515, 892, 919
BstV2I	GAAGAC	1 cut(s)	279
Bsu36I	CCTNAGG	1 cut(s)	384
BsuRI	GGCC	9 cut(s)	22, 84, 158, 302, 393, 453, 532, 688, 844
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	3 cut(s)	355, 415, 771
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	5 cut(s)	30, 36, 145, 513, 763
Cac8I	GCNNGC	5 cut(s)	54, 160, 172, 176, 356
CciI	TCATGA	1 cut(s)	333
CfoI	GCGC	2 cut(s)	47, 513
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	3 cut(s)	20, 83, 583
Csp6I	GTAC	3 cut(s)	210, 293, 428
CviAII	CATG	8 cut(s)	76, 244, 334, 361, 499, 614, 858, 895
CviQI	GTAC	3 cut(s)	210, 293, 428
DdeI	CTNAG	6 cut(s)	107, 153, 384, 603, 630, 641
DpnI	GATC	2 cut(s)	338, 840
DpnII	GATC	2 cut(s)	336, 838
EaeI	YGGCCR	2 cut(s)	391, 842
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	583
Eco57I	CTGAAG	3 cut(s)	452, 675, 795
Eco81I	CCTNAGG	1 cut(s)	384
EcoNI	CCTNNNNNAGG	1 cut(s)	644
EcoO109I	RGGNCCY	1 cut(s)	83
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	8 cut(s)	79, 247, 337, 364, 502, 617, 861, 898
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FaqI	GGGAC	2 cut(s)	460, 959
FatI	CATG	8 cut(s)	75, 243, 333, 360, 498, 613, 857, 894
FauI	CCCGC	3 cut(s)	49, 183, 643
FbaI	TGATCA	1 cut(s)	336
Fnu4HI	GCNGC	4 cut(s)	168, 504, 906, 933
FokI	GGATG	3 cut(s)	362, 402, 778
Fsp4HI	GCNGC	4 cut(s)	168, 504, 906, 933
FspBI	CTAG	3 cut(s)	288, 486, 528
FspI	TGCGCA	1 cut(s)	512
GlaI	GCGC	2 cut(s)	46, 512
GluI	GCNGC	4 cut(s)	168, 504, 906, 933
HaeIII	GGCC	9 cut(s)	22, 84, 158, 302, 393, 453, 532, 688, 844
HapII	CCGG	1 cut(s)	159
HhaI	GCGC	2 cut(s)	47, 513
Hin1II	CATG	8 cut(s)	79, 247, 337, 364, 502, 617, 861, 898
Hin6I	GCGC	2 cut(s)	45, 511
HinP1I	GCGC	2 cut(s)	45, 511
HincII	GTYRAC	1 cut(s)	739
HindII	GTYRAC	1 cut(s)	739
HinfI	GANTC	3 cut(s)	135, 597, 779
HpaI	GTTAAC	1 cut(s)	739
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	2 cut(s)	322, 562
Hpy166II	GTNNAC	3 cut(s)	293, 739, 828
Hpy188I	TCNGA	4 cut(s)	108, 644, 694, 814
Hpy188III	TCNNGA	2 cut(s)	334, 783
Hpy8I	GTNNAC	3 cut(s)	293, 739, 828
HpyAV	CCTTC	5 cut(s)	88, 124, 464, 692, 699
HpyCH4III	ACNGT	2 cut(s)	40, 758
HpyCH4V	TGCA	7 cut(s)	16, 147, 185, 195, 422, 613, 720
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 164, 626, 796, 895
HpyF3I	CTNAG	6 cut(s)	107, 153, 384, 603, 630, 641
Hsp92II	CATG	8 cut(s)	79, 247, 337, 364, 502, 617, 861, 898
HspAI	GCGC	2 cut(s)	45, 511
KroI	GCCGGC	1 cut(s)	158
KroNI	GCCGGC	1 cut(s)	160
Ksp22I	TGATCA	1 cut(s)	336
KspAI	GTTAAC	1 cut(s)	739
Kzo9I	GATC	2 cut(s)	336, 838
LmnI	GCTCC	3 cut(s)	320, 415, 957
Lsp1109I	GCAGC	4 cut(s)	154, 515, 892, 919
LweI	GCATC	5 cut(s)	112, 156, 685, 707, 919
MaeI	CTAG	3 cut(s)	288, 486, 528
MaeIII	GTNAC	1 cut(s)	598
MalI	GATC	2 cut(s)	338, 840
MboI	GATC	2 cut(s)	336, 838
MboII	GAAGA	7 cut(s)	213, 284, 325, 445, 449, 452, 926
MfeI	CAATTG	1 cut(s)	423
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	4 cut(s)	253, 283, 423, 465
MluNI	TGGCCA	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	606
MmeI	TCCRAC	2 cut(s)	610, 982
Mox20I	TGGCCA	1 cut(s)	393
MroNI	GCCGGC	1 cut(s)	158
MscI	TGGCCA	1 cut(s)	393
MseI	TTAA	3 cut(s)	282, 738, 879
MslI	CAYNNNNRTG	2 cut(s)	190, 200
Msp20I	TGGCCA	1 cut(s)	393
MspI	CCGG	1 cut(s)	159
MunI	CAATTG	1 cut(s)	423
MwoI	GCNNNNNNNGC	5 cut(s)	53, 164, 626, 796, 895
NaeI	GCCGGC	1 cut(s)	160
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	2 cut(s)	336, 838
NgoMIV	GCCGGC	1 cut(s)	158
NlaIII	CATG	8 cut(s)	79, 247, 337, 364, 502, 617, 861, 898
NlaIV	GGNNCC	1 cut(s)	726
NmuCI	GTSAC	1 cut(s)	598
NsbI	TGCGCA	1 cut(s)	512
NspI	RCATGY	1 cut(s)	898
OliI	CACNNNNGTG	1 cut(s)	200
PagI	TCATGA	1 cut(s)	333
PdiI	GCCGGC	1 cut(s)	160
PfeI	GAWTC	2 cut(s)	135, 779
PkrI	GCNGC	4 cut(s)	169, 505, 907, 934
PleI	GAGTC	1 cut(s)	605
PpsI	GAGTC	1 cut(s)	605
PspN4I	GGNNCC	1 cut(s)	726
PspPI	GGNCC	3 cut(s)	20, 83, 583
PsrI	GAACNNNNNNTAC	2 cut(s)	202, 234
RsaI	GTAC	3 cut(s)	211, 294, 429
RsaNI	GTAC	3 cut(s)	210, 293, 428
RseI	CAYNNNNRTG	2 cut(s)	190, 200
SaqAI	TTAA	3 cut(s)	282, 738, 879
SatI	GCNGC	4 cut(s)	168, 504, 906, 933
Sau3AI	GATC	2 cut(s)	336, 838
Sau96I	GGNCC	3 cut(s)	20, 83, 583
SchI	GAGTC	1 cut(s)	606
SfaNI	GCATC	5 cut(s)	112, 156, 685, 707, 919
SfcI	CTRYAG	1 cut(s)	922
SinI	GGWCC	1 cut(s)	583
SmiMI	CAYNNNNRTG	2 cut(s)	190, 200
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	4 cut(s)	253, 283, 423, 465
SsiI	CCGC	3 cut(s)	56, 176, 650
SspMI	CTAG	3 cut(s)	288, 486, 528
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	2 cut(s)	40, 758
TasI	AATT	4 cut(s)	253, 283, 423, 465
TatI	WGTACW	3 cut(s)	209, 292, 427
TfiI	GAWTC	2 cut(s)	135, 779
Tru1I	TTAA	3 cut(s)	282, 738, 879
Tru9I	TTAA	3 cut(s)	282, 738, 879
TscAI	CASTG	5 cut(s)	30, 43, 145, 513, 763
TseFI	GTSAC	1 cut(s)	598
TseI	GCWGC	4 cut(s)	167, 503, 905, 932
Tsp45I	GTSAC	1 cut(s)	598
TspDTI	ATGAA	4 cut(s)	276, 285, 322, 630
TspRI	CASTG	5 cut(s)	30, 43, 145, 513, 763
VpaK11BI	GGWCC	1 cut(s)	583
XagI	CCTNNNNNAGG	1 cut(s)	644
XapI	RAATTY	1 cut(s)	253
XceI	RCATGY	1 cut(s)	898
XspI	CTAG	3 cut(s)	288, 486, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.