Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003171

Physical Location & Seq

Genomic Coordinates Reverse (-)

61305806 .. 61310091

Gene Structure 4286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG419900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGATGGGGTCTTTGCAAGGGCCAGTGATTTGCCCCACTGTCAGCGCAAAGCAAGCTGGTTCTTACAATCTGCCCATGTTAGGCCCCCTGTTGAAGGTCAGGCATCTGAGAAGTGAGCTATGGGGATTGAAGGGAATCAGTGGTTGCATCACTAAGGCAGGCTTTGCTGCTCGCCCGCAAAATGCACGAAAATGCACAAGAGTGCATTGTACTTTCAGTTCTTCGTCAAATGGGAATGGAAGCATGGCAGAGAATTTCAATGAAAATGATGAAGACTATGTTAATTCTAGTGTACTTGAGGCCGTTGAGGTGAAGAGTGGAGCTGATGGGTTCATGATCAAAATGAGGGATGGCAGGCACATGAGGTGTGTCCATAACAACCCTCAGGGTGGCCATCTGCCAGACTATGCGCCACATCCTGCAATTGTACTGAAGATGGAAGATGGGACTGGCCTTCTTCTCCCAATTATTGTTTTGGAAATGCCTAGTGTGTTGCTCATGGCAGCAGTGCGCAATGTTCCTATTGCTAGGCCAACTATGTATCAAGTGGTGAGGGAAATGATTGACAAGATGGGCTATGAGGTCCAACTTGTTAGAGTCACTAAGAGAGTGCATGAAGCATATTTTGCTCAGTTATACCTCAGAAAGGCAGGTAGTGAAACAGAGTTTGTCAGCTTTGACCTTCGGCCTTCAGATGCCATCAACATTGCTGTAAGATGCAAGGTATTCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043207 GO:0043565 GO:0044237 GO:0044238 GO:0046483 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0098542 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNase-RNase UVR

Protein Analysis

244

Amino Acids

26.97

Weight (kDa)

9.16

Isoelectric Point (pI)

44.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BFN_dom	PF02577	142 - 242	3.3e-18	Bifunctional nuclease domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19660 AT1G19660 AT1G19660 AT1G75380 AT1G75380 AT1G75380 AT1G75380
fragaria_vesca	FvH4_2g39410 FvH4_2g39410 FvH4_2g39410
malus_domestica	MD08G1026400.v1.1 MD15G1023200.v1.1
prunus_persica	Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0301571
rosa_laevigata	RLG00000009590 RLG00000011243
rosa_multiflora	Rmu_ssc0000452.1_g000006
rosa_roxburghii	Rroxscaffold_7G00166640
rosa_rugosa	Rorug06G0306400 Rorug06G0306500 Rorug06G0306500 Rorug06G0306600
rosa_samantha	Rh4AG062700 Rh4AG063700 Rh4BG062400 Rh4CG068700 Rh6AG419900 Rh6BG425900 Rh6CG432900 Rh6DG419200
rosa_wichuraiana	Rw6G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	512
Acc36I	ACCTGC	1 cut(s)	641
AciI	CCGC	1 cut(s)	176
AcoI	YGGCCR	1 cut(s)	391
AcsI	RAATTY	1 cut(s)	253
AcuI	CTGAAG	2 cut(s)	452, 675
AfaI	GTAC	3 cut(s)	211, 294, 429
AfiI	CCNNNNNNNGG	4 cut(s)	80, 94, 389, 646
AgsI	TTSAA	3 cut(s)	94, 130, 259
AleI	CACNNNNGTG	1 cut(s)	200
AluBI	AGCT	4 cut(s)	56, 118, 323, 675
AluI	AGCT	4 cut(s)	56, 118, 323, 675
AoxI	GGCC	7 cut(s)	20, 82, 300, 391, 451, 530, 686
ApeKI	GCWGC	2 cut(s)	167, 503
ApoI	RAATTY	1 cut(s)	253
AspLEI	GCGC	3 cut(s)	47, 412, 513
AspS9I	GGNCC	3 cut(s)	20, 83, 583
AsuHPI	GGTGA	2 cut(s)	322, 562
AvaII	GGWCC	1 cut(s)	583
AxyI	CCTNAGG	1 cut(s)	384
BalI	TGGCCA	1 cut(s)	393
BbsI	GAAGAC	1 cut(s)	279
BbvI	GCAGC	2 cut(s)	154, 515
BccI	CCATC	7 cut(s)	320, 344, 402, 430, 437, 565, 707
BceAI	ACGGC	1 cut(s)	287
BclI	TGATCA	1 cut(s)	336
BfaI	CTAG	3 cut(s)	288, 486, 528
BfuAI	ACCTGC	1 cut(s)	641
BisI	GCNGC	2 cut(s)	168, 504
BlsI	GCNGC	2 cut(s)	169, 505
Bme18I	GGWCC	1 cut(s)	583
BmgT120I	GGNCC	3 cut(s)	20, 83, 583
BmiI	GGNNCC	1 cut(s)	85
BmsI	GCATC	4 cut(s)	112, 156, 685, 707
BpiI	GAAGAC	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	4 cut(s)	80, 94, 389, 646
Bse1I	ACTGG	2 cut(s)	23, 454
Bse21I	CCTNAGG	1 cut(s)	384
Bse3DI	GCAATG	2 cut(s)	520, 705
BseGI	GGATG	2 cut(s)	355, 415
BseLI	CCNNNNNNNGG	4 cut(s)	80, 94, 389, 646
BseMI	GCAATG	2 cut(s)	520, 705
BseMII	CTCAG	4 cut(s)	98, 398, 644, 655
BseNI	ACTGG	2 cut(s)	23, 454
BseXI	GCAGC	2 cut(s)	154, 515
BshFI	GGCC	7 cut(s)	22, 84, 302, 393, 453, 532, 688
BslFI	GGGAC	1 cut(s)	460
BslI	CCNNNNNNNGG	4 cut(s)	80, 94, 389, 646
BsmFI	GGGAC	1 cut(s)	460
BsnI	GGCC	7 cut(s)	22, 84, 302, 393, 453, 532, 688
Bsp143I	GATC	1 cut(s)	336
BspACI	CCGC	1 cut(s)	176
BspANI	GGCC	7 cut(s)	22, 84, 302, 393, 453, 532, 688
BspCNI	CTCAG	4 cut(s)	99, 397, 643, 654
BspHI	TCATGA	1 cut(s)	333
BspLI	GGNNCC	1 cut(s)	85
BspMI	ACCTGC	1 cut(s)	641
BsrDI	GCAATG	2 cut(s)	520, 705
BsrI	ACTGG	2 cut(s)	23, 454
BssMI	GATC	1 cut(s)	336
Bst4CI	ACNGT	1 cut(s)	40
Bst6I	CTCTTC	1 cut(s)	308
BstAPI	GCANNNNNTGC	2 cut(s)	164, 626
BstC8I	GCNNGC	5 cut(s)	54, 160, 172, 176, 356
BstDEI	CTNAG	6 cut(s)	107, 153, 384, 603, 630, 641
BstENI	CCTNNNNNAGG	2 cut(s)	92, 644
BstF5I	GGATG	2 cut(s)	355, 415
BstHHI	GCGC	3 cut(s)	47, 412, 513
BstKTI	GATC	1 cut(s)	339
BstMBI	GATC	1 cut(s)	336
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 164, 626
BstV1I	GCAGC	2 cut(s)	154, 515
BstV2I	GAAGAC	1 cut(s)	279
Bsu36I	CCTNAGG	1 cut(s)	384
BsuRI	GGCC	7 cut(s)	22, 84, 302, 393, 453, 532, 688
BtsCI	GGATG	2 cut(s)	355, 415
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	4 cut(s)	30, 36, 145, 513
BveI	ACCTGC	1 cut(s)	641
Cac8I	GCNNGC	5 cut(s)	54, 160, 172, 176, 356
CciI	TCATGA	1 cut(s)	333
CfoI	GCGC	3 cut(s)	47, 412, 513
Cfr13I	GGNCC	3 cut(s)	20, 83, 583
Csp6I	GTAC	3 cut(s)	210, 293, 428
CviAII	CATG	6 cut(s)	76, 244, 334, 361, 499, 614
CviQI	GTAC	3 cut(s)	210, 293, 428
DdeI	CTNAG	6 cut(s)	107, 153, 384, 603, 630, 641
DpnI	GATC	1 cut(s)	338
DpnII	GATC	1 cut(s)	336
EaeI	YGGCCR	1 cut(s)	391
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
Eco47I	GGWCC	1 cut(s)	583
Eco57I	CTGAAG	2 cut(s)	452, 675
Eco81I	CCTNAGG	1 cut(s)	384
EcoNI	CCTNNNNNAGG	2 cut(s)	92, 644
EcoO109I	RGGNCCY	1 cut(s)	83
FaeI	CATG	6 cut(s)	79, 247, 337, 364, 502, 617
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FaqI	GGGAC	1 cut(s)	460
FatI	CATG	6 cut(s)	75, 243, 333, 360, 498, 613
FauI	CCCGC	1 cut(s)	183
FbaI	TGATCA	1 cut(s)	336
Fnu4HI	GCNGC	2 cut(s)	168, 504
FokI	GGATG	2 cut(s)	362, 402
Fsp4HI	GCNGC	2 cut(s)	168, 504
FspBI	CTAG	3 cut(s)	288, 486, 528
FspI	TGCGCA	1 cut(s)	512
GlaI	GCGC	3 cut(s)	46, 411, 512
GluI	GCNGC	2 cut(s)	168, 504
HaeIII	GGCC	7 cut(s)	22, 84, 302, 393, 453, 532, 688
HhaI	GCGC	3 cut(s)	47, 412, 513
Hin1II	CATG	6 cut(s)	79, 247, 337, 364, 502, 617
Hin6I	GCGC	3 cut(s)	45, 410, 511
HinP1I	GCGC	3 cut(s)	45, 410, 511
HinfI	GANTC	2 cut(s)	135, 597
HphI	GGTGA	2 cut(s)	322, 562
Hpy166II	GTNNAC	1 cut(s)	293
Hpy188I	TCNGA	4 cut(s)	108, 644, 694, 731
Hpy188III	TCNNGA	1 cut(s)	334
Hpy8I	GTNNAC	1 cut(s)	293
HpyAV	CCTTC	5 cut(s)	88, 124, 464, 692, 699
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4V	TGCA	8 cut(s)	16, 147, 185, 195, 205, 422, 613, 720
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 164, 626
HpyF3I	CTNAG	6 cut(s)	107, 153, 384, 603, 630, 641
Hsp92II	CATG	6 cut(s)	79, 247, 337, 364, 502, 617
HspAI	GCGC	3 cut(s)	45, 410, 511
Ksp22I	TGATCA	1 cut(s)	336
Kzo9I	GATC	1 cut(s)	336
LmnI	GCTCC	1 cut(s)	320
Lsp1109I	GCAGC	2 cut(s)	154, 515
LweI	GCATC	4 cut(s)	112, 156, 685, 707
MaeI	CTAG	3 cut(s)	288, 486, 528
MaeIII	GTNAC	1 cut(s)	598
MalI	GATC	1 cut(s)	338
MboI	GATC	1 cut(s)	336
MboII	GAAGA	6 cut(s)	213, 284, 325, 445, 449, 452
MfeI	CAATTG	1 cut(s)	423
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	4 cut(s)	253, 283, 423, 465
MluNI	TGGCCA	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	606
MmeI	TCCRAC	1 cut(s)	610
MnlI	CCTC	8 cut(s)	292, 301, 339, 357, 393, 546, 574, 650
Mox20I	TGGCCA	1 cut(s)	393
MscI	TGGCCA	1 cut(s)	393
MseI	TTAA	1 cut(s)	282
MslI	CAYNNNNRTG	2 cut(s)	190, 200
Msp20I	TGGCCA	1 cut(s)	393
MunI	CAATTG	1 cut(s)	423
MwoI	GCNNNNNNNGC	3 cut(s)	53, 164, 626
NdeII	GATC	1 cut(s)	336
NlaIII	CATG	6 cut(s)	79, 247, 337, 364, 502, 617
NlaIV	GGNNCC	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	598
NsbI	TGCGCA	1 cut(s)	512
OliI	CACNNNNGTG	1 cut(s)	200
PagI	TCATGA	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	135
PkrI	GCNGC	2 cut(s)	169, 505
PleI	GAGTC	1 cut(s)	605
PpsI	GAGTC	1 cut(s)	605
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	3 cut(s)	20, 83, 583
PsrI	GAACNNNNNNTAC	2 cut(s)	202, 234
RsaI	GTAC	3 cut(s)	211, 294, 429
RsaNI	GTAC	3 cut(s)	210, 293, 428
RseI	CAYNNNNRTG	2 cut(s)	190, 200
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	2 cut(s)	168, 504
Sau3AI	GATC	1 cut(s)	336
Sau96I	GGNCC	3 cut(s)	20, 83, 583
SchI	GAGTC	1 cut(s)	606
SfaNI	GCATC	4 cut(s)	112, 156, 685, 707
SinI	GGWCC	1 cut(s)	583
SmiMI	CAYNNNNRTG	2 cut(s)	190, 200
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	4 cut(s)	253, 283, 423, 465
SsiI	CCGC	1 cut(s)	176
SspMI	CTAG	3 cut(s)	288, 486, 528
TaaI	ACNGT	1 cut(s)	40
TasI	AATT	4 cut(s)	253, 283, 423, 465
TatI	WGTACW	3 cut(s)	209, 292, 427
TfiI	GAWTC	1 cut(s)	135
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	4 cut(s)	30, 43, 145, 513
TseFI	GTSAC	1 cut(s)	598
TseI	GCWGC	2 cut(s)	167, 503
Tsp45I	GTSAC	1 cut(s)	598
TspDTI	ATGAA	4 cut(s)	276, 285, 322, 630
TspRI	CASTG	4 cut(s)	30, 43, 145, 513
VpaK11BI	GGWCC	1 cut(s)	583
XagI	CCTNNNNNAGG	2 cut(s)	92, 644
XapI	RAATTY	1 cut(s)	253
XspI	CTAG	3 cut(s)	288, 486, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.