Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003171

Physical Location & Seq

Genomic Coordinates Reverse (-)

60785923 .. 60788954

Gene Structure 3032 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G036300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGATGGGGTCTTTGCAAGGGCCAGTGATTTGCCCCACTGTCAGCGCAAAGCAAGCTGGTTCTTACAATCTGCCCATGTTAGGCCCCCTGTTGAAGGTCAGGCATCTGAGAAGTGAGCTATGGGGATTGAAGGGAATCAGTGGTTGCATCACTAAGGCAGGCTTTGCTGCTCGCCCGCAAAATGCACGAAAATGCACAAGAGTGCATTGTACTTTCAGTTCTTCGTCAAATGGGAATGGAAGCATGGCAGAGAATTTCAATGAAAATGATGAAGACTATGTTAATTCTAGTGTACTTGAGGCCGTTGAGGTGAAGAGTGGAGCTGATGGGTTCATGATCAAAATGAGGGATGGCAGGCACATGAGGTGTGTCCATAACAACCCTCAGGGTGGCCATCTGCCAGACTATGCGCCACATCCTGCAATTGTACTGAAGATGGAAGATGGGACTGGCCTTCTTCTCCCAATTATTGTTTTGGAAATGCCTAGTGTGTTGCTCATGGCAGCAGTGCGCAATGTTCCTATTGCCAACTATGTATCAAGTGGTGAGGGAATGATTGACAAGATGGGCTATGAGGTCCAACTTGTTAGAGTCACTAAGAGAGTGCATGAAGCATATTTTGCTCAGTTATACCTCAGAAAGGCAGGTAGTGAAACAGAGTTTGTCAGCTTTGACCTTCGGCCTTCAGATGCCATCAACATTGCTGTAAGATGCAAGGTTCCCATACAAGTTAACAAGTATCTGGCATACAGTGATGGGATGAGAGTTATTGAATCTGGAAAGCTCTCTACGCATACCCCTGCTTCAGATGGCTTATTGTTTACTGAACTGGATCGGCCAAATGGTAAGCCATGTGTTGAGACAAAGGAGTTTAATCTTGTGCGCAACATGCTTATTGCTGCTGTTGAAGAACGCTACAGAGATGCTGCTCAATGGAGGGACAAGCTTCTCCAACTTCGTGCTAAAAAGAACTTGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043207 GO:0043565 GO:0044237 GO:0044238 GO:0046483 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0098542 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNase-RNase UVR

Protein Analysis

326

Amino Acids

35.98

Weight (kDa)

8.99

Isoelectric Point (pI)

38.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BFN_dom	PF02577	142 - 252	4.8e-14	Bifunctional nuclease domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19660 AT1G19660 AT1G19660 AT1G75380 AT1G75380 AT1G75380 AT1G75380
fragaria_vesca	FvH4_2g39410 FvH4_2g39410 FvH4_2g39410
malus_domestica	MD08G1026400.v1.1 MD15G1023200.v1.1
prunus_persica	Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0301571
rosa_laevigata	RLG00000009590 RLG00000011243
rosa_multiflora	Rmu_ssc0000452.1_g000006
rosa_roxburghii	Rroxscaffold_7G00166640
rosa_rugosa	Rorug06G0306400 Rorug06G0306500 Rorug06G0306500 Rorug06G0306600
rosa_samantha	Rh4AG062700 Rh4AG063700 Rh4BG062400 Rh4CG068700 Rh6AG419900 Rh6BG425900 Rh6CG432900 Rh6DG419200
rosa_wichuraiana	Rw6G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	512, 884
Acc36I	ACCTGC	1 cut(s)	635
AciI	CCGC	1 cut(s)	176
AclWI	GGATC	1 cut(s)	840
AcoI	YGGCCR	2 cut(s)	391, 836
AcsI	RAATTY	1 cut(s)	253
AcuI	CTGAAG	3 cut(s)	452, 669, 789
AfaI	GTAC	3 cut(s)	211, 294, 429
AfiI	CCNNNNNNNGG	4 cut(s)	80, 94, 389, 640
AgsI	TTSAA	5 cut(s)	94, 130, 259, 773, 908
AleI	CACNNNNGTG	1 cut(s)	200
AluBI	AGCT	6 cut(s)	56, 118, 323, 669, 784, 946
AluI	AGCT	6 cut(s)	56, 118, 323, 669, 784, 946
Alw26I	GTCTC	1 cut(s)	854
AlwI	GGATC	1 cut(s)	840
AoxI	GGCC	7 cut(s)	20, 82, 300, 391, 451, 680, 836
ApeKI	GCWGC	4 cut(s)	167, 503, 899, 926
ApoI	RAATTY	1 cut(s)	253
AspLEI	GCGC	4 cut(s)	47, 412, 513, 885
AspS9I	GGNCC	3 cut(s)	20, 83, 577
AsuHPI	GGTGA	2 cut(s)	322, 557
AvaII	GGWCC	1 cut(s)	577
AxyI	CCTNAGG	1 cut(s)	384
BalI	TGGCCA	1 cut(s)	393
BbsI	GAAGAC	1 cut(s)	279
BbvI	GCAGC	4 cut(s)	154, 515, 886, 913
BccI	CCATC	9 cut(s)	320, 344, 402, 430, 437, 559, 701, 749, 803
BceAI	ACGGC	1 cut(s)	287
BclI	TGATCA	1 cut(s)	336
BcoDI	GTCTC	1 cut(s)	854
BfaI	CTAG	2 cut(s)	288, 486
BfmI	CTRYAG	1 cut(s)	916
BfuAI	ACCTGC	1 cut(s)	635
BisI	GCNGC	4 cut(s)	168, 504, 900, 927
BlsI	GCNGC	4 cut(s)	169, 505, 901, 928
Bme18I	GGWCC	1 cut(s)	577
BmgT120I	GGNCC	3 cut(s)	20, 83, 577
BmiI	GGNNCC	2 cut(s)	85, 720
BmsI	GCATC	5 cut(s)	112, 156, 679, 701, 913
BpiI	GAAGAC	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	4 cut(s)	80, 94, 389, 640
Bse1I	ACTGG	3 cut(s)	23, 454, 834
Bse21I	CCTNAGG	1 cut(s)	384
Bse3DI	GCAATG	2 cut(s)	520, 699
BseGI	GGATG	3 cut(s)	355, 415, 765
BseLI	CCNNNNNNNGG	4 cut(s)	80, 94, 389, 640
BseMI	GCAATG	2 cut(s)	520, 699
BseMII	CTCAG	4 cut(s)	98, 398, 638, 649
BseNI	ACTGG	3 cut(s)	23, 454, 834
BseXI	GCAGC	4 cut(s)	154, 515, 886, 913
BshFI	GGCC	7 cut(s)	22, 84, 302, 393, 453, 682, 838
BslFI	GGGAC	2 cut(s)	460, 953
BslI	CCNNNNNNNGG	4 cut(s)	80, 94, 389, 640
BsmAI	GTCTC	1 cut(s)	854
BsmFI	GGGAC	2 cut(s)	460, 953
BsnI	GGCC	7 cut(s)	22, 84, 302, 393, 453, 682, 838
Bsp143I	GATC	2 cut(s)	336, 832
BspACI	CCGC	1 cut(s)	176
BspANI	GGCC	7 cut(s)	22, 84, 302, 393, 453, 682, 838
BspCNI	CTCAG	4 cut(s)	99, 397, 637, 648
BspHI	TCATGA	1 cut(s)	333
BspLI	GGNNCC	2 cut(s)	85, 720
BspMI	ACCTGC	1 cut(s)	635
BspPI	GGATC	1 cut(s)	840
BsrDI	GCAATG	2 cut(s)	520, 699
BsrI	ACTGG	3 cut(s)	23, 454, 834
BssMI	GATC	2 cut(s)	336, 832
Bst4CI	ACNGT	2 cut(s)	40, 752
Bst6I	CTCTTC	1 cut(s)	308
BstAPI	GCANNNNNTGC	2 cut(s)	164, 620
BstC8I	GCNNGC	5 cut(s)	54, 160, 172, 176, 356
BstDEI	CTNAG	6 cut(s)	107, 153, 384, 597, 624, 635
BstENI	CCTNNNNNAGG	2 cut(s)	92, 638
BstF5I	GGATG	3 cut(s)	355, 415, 765
BstHHI	GCGC	4 cut(s)	47, 412, 513, 885
BstKTI	GATC	2 cut(s)	339, 835
BstMAI	GTCTC	1 cut(s)	854
BstMBI	GATC	2 cut(s)	336, 832
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 164, 620, 790, 889
BstNSI	RCATGY	1 cut(s)	892
BstSFI	CTRYAG	1 cut(s)	916
BstV1I	GCAGC	4 cut(s)	154, 515, 886, 913
BstV2I	GAAGAC	1 cut(s)	279
Bsu36I	CCTNAGG	1 cut(s)	384
BsuRI	GGCC	7 cut(s)	22, 84, 302, 393, 453, 682, 838
BtsCI	GGATG	3 cut(s)	355, 415, 765
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	5 cut(s)	30, 36, 145, 513, 757
BveI	ACCTGC	1 cut(s)	635
Cac8I	GCNNGC	5 cut(s)	54, 160, 172, 176, 356
CciI	TCATGA	1 cut(s)	333
CfoI	GCGC	4 cut(s)	47, 412, 513, 885
Cfr13I	GGNCC	3 cut(s)	20, 83, 577
Csp6I	GTAC	3 cut(s)	210, 293, 428
CviAII	CATG	8 cut(s)	76, 244, 334, 361, 499, 608, 852, 889
CviQI	GTAC	3 cut(s)	210, 293, 428
DdeI	CTNAG	6 cut(s)	107, 153, 384, 597, 624, 635
DpnI	GATC	2 cut(s)	338, 834
DpnII	GATC	2 cut(s)	336, 832
EaeI	YGGCCR	2 cut(s)	391, 836
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
Eco47I	GGWCC	1 cut(s)	577
Eco57I	CTGAAG	3 cut(s)	452, 669, 789
Eco81I	CCTNAGG	1 cut(s)	384
EcoNI	CCTNNNNNAGG	2 cut(s)	92, 638
EcoO109I	RGGNCCY	1 cut(s)	83
FaeI	CATG	8 cut(s)	79, 247, 337, 364, 502, 611, 855, 892
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FaqI	GGGAC	2 cut(s)	460, 953
FatI	CATG	8 cut(s)	75, 243, 333, 360, 498, 607, 851, 888
FauI	CCCGC	1 cut(s)	183
FbaI	TGATCA	1 cut(s)	336
Fnu4HI	GCNGC	4 cut(s)	168, 504, 900, 927
FokI	GGATG	3 cut(s)	362, 402, 772
Fsp4HI	GCNGC	4 cut(s)	168, 504, 900, 927
FspBI	CTAG	2 cut(s)	288, 486
FspI	TGCGCA	2 cut(s)	512, 884
GlaI	GCGC	4 cut(s)	46, 411, 512, 884
GluI	GCNGC	4 cut(s)	168, 504, 900, 927
HaeIII	GGCC	7 cut(s)	22, 84, 302, 393, 453, 682, 838
HhaI	GCGC	4 cut(s)	47, 412, 513, 885
Hin1II	CATG	8 cut(s)	79, 247, 337, 364, 502, 611, 855, 892
Hin6I	GCGC	4 cut(s)	45, 410, 511, 883
HinP1I	GCGC	4 cut(s)	45, 410, 511, 883
HincII	GTYRAC	1 cut(s)	733
HindII	GTYRAC	1 cut(s)	733
HindIII	AAGCTT	1 cut(s)	944
HinfI	GANTC	3 cut(s)	135, 591, 773
HpaI	GTTAAC	1 cut(s)	733
HphI	GGTGA	2 cut(s)	322, 557
Hpy166II	GTNNAC	3 cut(s)	293, 733, 822
Hpy188I	TCNGA	4 cut(s)	108, 638, 688, 808
Hpy188III	TCNNGA	2 cut(s)	334, 777
Hpy8I	GTNNAC	3 cut(s)	293, 733, 822
HpyAV	CCTTC	5 cut(s)	88, 124, 464, 686, 693
HpyCH4III	ACNGT	2 cut(s)	40, 752
HpyCH4V	TGCA	8 cut(s)	16, 147, 185, 195, 205, 422, 607, 714
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 164, 620, 790, 889
HpyF3I	CTNAG	6 cut(s)	107, 153, 384, 597, 624, 635
Hsp92II	CATG	8 cut(s)	79, 247, 337, 364, 502, 611, 855, 892
HspAI	GCGC	4 cut(s)	45, 410, 511, 883
Ksp22I	TGATCA	1 cut(s)	336
KspAI	GTTAAC	1 cut(s)	733
Kzo9I	GATC	2 cut(s)	336, 832
LmnI	GCTCC	1 cut(s)	320
Lsp1109I	GCAGC	4 cut(s)	154, 515, 886, 913
LweI	GCATC	5 cut(s)	112, 156, 679, 701, 913
MaeI	CTAG	2 cut(s)	288, 486
MaeIII	GTNAC	1 cut(s)	592
MalI	GATC	2 cut(s)	338, 834
MboI	GATC	2 cut(s)	336, 832
MboII	GAAGA	7 cut(s)	213, 284, 325, 445, 449, 452, 920
MfeI	CAATTG	1 cut(s)	423
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	4 cut(s)	253, 283, 423, 465
MluNI	TGGCCA	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	600
MmeI	TCCRAC	2 cut(s)	604, 976
MnlI	CCTC	9 cut(s)	292, 301, 339, 357, 393, 541, 568, 644, 930
Mox20I	TGGCCA	1 cut(s)	393
MscI	TGGCCA	1 cut(s)	393
MseI	TTAA	3 cut(s)	282, 732, 873
MslI	CAYNNNNRTG	2 cut(s)	190, 200
Msp20I	TGGCCA	1 cut(s)	393
MunI	CAATTG	1 cut(s)	423
MwoI	GCNNNNNNNGC	5 cut(s)	53, 164, 620, 790, 889
NdeII	GATC	2 cut(s)	336, 832
NlaIII	CATG	8 cut(s)	79, 247, 337, 364, 502, 611, 855, 892
NlaIV	GGNNCC	2 cut(s)	85, 720
NmuCI	GTSAC	1 cut(s)	592
NsbI	TGCGCA	2 cut(s)	512, 884
NspI	RCATGY	1 cut(s)	892
OliI	CACNNNNGTG	1 cut(s)	200
PagI	TCATGA	1 cut(s)	333
PfeI	GAWTC	2 cut(s)	135, 773
PkrI	GCNGC	4 cut(s)	169, 505, 901, 928
PleI	GAGTC	1 cut(s)	599
PpsI	GAGTC	1 cut(s)	599
PspN4I	GGNNCC	2 cut(s)	85, 720
PspPI	GGNCC	3 cut(s)	20, 83, 577
PsrI	GAACNNNNNNTAC	2 cut(s)	202, 234
RsaI	GTAC	3 cut(s)	211, 294, 429
RsaNI	GTAC	3 cut(s)	210, 293, 428
RseI	CAYNNNNRTG	2 cut(s)	190, 200
SaqAI	TTAA	3 cut(s)	282, 732, 873
SatI	GCNGC	4 cut(s)	168, 504, 900, 927
Sau3AI	GATC	2 cut(s)	336, 832
Sau96I	GGNCC	3 cut(s)	20, 83, 577
SchI	GAGTC	1 cut(s)	600
SfaNI	GCATC	5 cut(s)	112, 156, 679, 701, 913
SfcI	CTRYAG	1 cut(s)	916
SinI	GGWCC	1 cut(s)	577
SmiMI	CAYNNNNRTG	2 cut(s)	190, 200
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	4 cut(s)	253, 283, 423, 465
SsiI	CCGC	1 cut(s)	176
SspMI	CTAG	2 cut(s)	288, 486
TaaI	ACNGT	2 cut(s)	40, 752
TasI	AATT	4 cut(s)	253, 283, 423, 465
TatI	WGTACW	3 cut(s)	209, 292, 427
TfiI	GAWTC	2 cut(s)	135, 773
Tru1I	TTAA	3 cut(s)	282, 732, 873
Tru9I	TTAA	3 cut(s)	282, 732, 873
TscAI	CASTG	5 cut(s)	30, 43, 145, 513, 757
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	4 cut(s)	167, 503, 899, 926
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	4 cut(s)	276, 285, 322, 624
TspRI	CASTG	5 cut(s)	30, 43, 145, 513, 757
VpaK11BI	GGWCC	1 cut(s)	577
XagI	CCTNNNNNAGG	2 cut(s)	92, 638
XapI	RAATTY	1 cut(s)	253
XceI	RCATGY	1 cut(s)	892
XspI	CTAG	2 cut(s)	288, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.