Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003171

Physical Location & Seq

Genomic Coordinates Reverse (-)

45779375 .. 45780290

Gene Structure 916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0306600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGATCGGAGAGCACGACGTTGAAATAGAACCCCTCGTTGCGCTCGAAAAATCTGAGGCCGATGAAGGCGTGCTTGTCGGTGCCGTCCTCGATCTTAAGGACGAAGTAGCTCGACGAGTCGAGCACGGTCTCGATGGAGGTCGCTGGAGTTTGGATCCTCAAGTCGGATCTCGCACTGGTCGATTGATTTGTGGTATCAAGTTAGTGATGCGATTTCGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043207 GO:0043565 GO:0044237 GO:0044238 GO:0046483 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0098542 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNase-RNase UVR

Protein Analysis

74

Amino Acids

8.15

Weight (kDa)

5.04

Isoelectric Point (pI)

29.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19660 AT1G19660 AT1G19660 AT1G75380 AT1G75380 AT1G75380 AT1G75380
fragaria_vesca	FvH4_2g39410 FvH4_2g39410 FvH4_2g39410
malus_domestica	MD08G1026400.v1.1 MD15G1023200.v1.1
prunus_persica	Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1 Prupe.1G375100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0301571
rosa_laevigata	RLG00000009590 RLG00000011243
rosa_multiflora	Rmu_ssc0000452.1_g000006
rosa_roxburghii	Rroxscaffold_7G00166640
rosa_rugosa	Rorug06G0306400 Rorug06G0306500 Rorug06G0306500 Rorug06G0306600
rosa_samantha	Rh4AG062700 Rh4AG063700 Rh4BG062400 Rh4CG068700 Rh6AG419900 Rh6BG425900 Rh6CG432900 Rh6DG419200
rosa_wichuraiana	Rw6G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	80
AclWI	GGATC	3 cut(s)	149, 162, 175
AfiI	CCNNNNNNNGG	1 cut(s)	164
AflII	CTTAAG	1 cut(s)	95
AgsI	TTSAA	1 cut(s)	23
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
Alw21I	GWGCWC	2 cut(s)	15, 126
Alw26I	GTCTC	1 cut(s)	134
AlwI	GGATC	3 cut(s)	149, 162, 175
AoxI	GGCC	1 cut(s)	57
AspLEI	GCGC	1 cut(s)	43
BamHI	GGATCC	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	80
Bbv12I	GWGCWC	2 cut(s)	15, 126
BccI	CCATC	1 cut(s)	128
BceAI	ACGGC	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	134
BfrI	CTTAAG	1 cut(s)	95
BmiI	GGNNCC	2 cut(s)	82, 156
BmsI	GCATC	1 cut(s)	198
BpmI	CTGGAG	1 cut(s)	166
BpuEI	CTTGAG	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	181
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	181
BshFI	GGCC	1 cut(s)	59
BshNI	GGYRCC	1 cut(s)	80
BsiHKAI	GWGCWC	2 cut(s)	15, 126
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	59
Bso31I	GGTCTC	1 cut(s)	134
Bsp1286I	GDGCHC	2 cut(s)	15, 126
Bsp143I	GATC	4 cut(s)	3, 91, 154, 167
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	1 cut(s)	46
BspLI	GGNNCC	2 cut(s)	82, 156
BspPI	GGATC	3 cut(s)	149, 162, 175
BspT107I	GGYRCC	1 cut(s)	80
BspTI	CTTAAG	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	181
BssMI	GATC	4 cut(s)	3, 91, 154, 167
Bst4CI	ACNGT	1 cut(s)	128
BstAFI	CTTAAG	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	71
BstDEI	CTNAG	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	4 cut(s)	6, 94, 157, 170
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	4 cut(s)	3, 91, 154, 167
BstX2I	RGATCY	2 cut(s)	154, 167
BstYI	RGATCY	2 cut(s)	154, 167
BsuRI	GGCC	1 cut(s)	59
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	71
CfoI	GCGC	1 cut(s)	43
CviJI	RGCY	2 cut(s)	59, 110
CviKI_1	RGCY	2 cut(s)	59, 110
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	4 cut(s)	5, 93, 156, 169
DpnII	GATC	4 cut(s)	3, 91, 154, 167
Eco31I	GGTCTC	1 cut(s)	134
FalI	AAGNNNNNCTT	2 cut(s)	57, 89
GlaI	GCGC	1 cut(s)	42
GsuI	CTGGAG	1 cut(s)	166
HaeIII	GGCC	1 cut(s)	59
HhaI	GCGC	1 cut(s)	43
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HinfI	GANTC	1 cut(s)	117
Hpy188I	TCNGA	3 cut(s)	8, 55, 167
Hpy188III	TCNNGA	1 cut(s)	131
Hpy99I	CGWCG	2 cut(s)	20, 117
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4IV	ACGT	1 cut(s)	18
HpyF3I	CTNAG	1 cut(s)	54
HpySE526I	ACGT	1 cut(s)	18
HspAI	GCGC	1 cut(s)	41
Kzo9I	GATC	4 cut(s)	3, 91, 154, 167
LpnPI	CCDG	2 cut(s)	130, 162
LweI	GCATC	1 cut(s)	198
MaeII	ACGT	1 cut(s)	18
MalI	GATC	4 cut(s)	5, 93, 156, 169
MboI	GATC	4 cut(s)	3, 91, 154, 167
MflI	RGATCY	2 cut(s)	154, 167
MhlI	GDGCHC	2 cut(s)	15, 126
MlyI	GAGTC	1 cut(s)	126
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	5 cut(s)	44, 49, 98, 131, 168
MseI	TTAA	1 cut(s)	96
MspCI	CTTAAG	1 cut(s)	95
NdeII	GATC	4 cut(s)	3, 91, 154, 167
NlaIV	GGNNCC	2 cut(s)	82, 156
PcsI	WCGNNNNNNNCGW	3 cut(s)	12, 42, 178
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PspN4I	GGNNCC	2 cut(s)	82, 156
PsuI	RGATCY	2 cut(s)	154, 167
SaqAI	TTAA	1 cut(s)	96
Sau3AI	GATC	4 cut(s)	3, 91, 154, 167
SchI	GAGTC	1 cut(s)	126
SduI	GDGCHC	2 cut(s)	15, 126
SetI	ASST	3 cut(s)	21, 112, 142
SfaNI	GCATC	1 cut(s)	198
SmlI	CTYRAG	2 cut(s)	95, 159
SmoI	CTYRAG	2 cut(s)	95, 159
TaaI	ACNGT	1 cut(s)	128
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	6 cut(s)	45, 90, 112, 120, 132, 181
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	78
TspRI	CASTG	1 cut(s)	181
Vha464I	CTTAAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.