AT1G19790

Protein SHI RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012802
Physical Location & Seq
Reverse (-)
6838120 .. 6840313
2194 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G19790.1

Sequence Viewer

Length: 1038 bp
ATGGCTGGATTGTTCTATCTAGGAGGGAGAGATCACAACAAACAAGATCATCATCAAGAAAAGGATCATAATGAAGACAAGAGCAACAATTATCTCTATCTATACAAAGACGAGATCTACAACAACAACAAGGGTTTTGAGATTTTCCCTCCTCAATATTTTCAACAACAACAGCAACAAAATCATGCGGCTGCTCCAACAAATCTCTACTCTTTTGGTATGGTCCCGAGTGGTGGTAACATAAACAATAACCGGAGTACTAATCGGAGTTTGTACTTCAACGTCGTCTCCGATCATGAGCCGGTGAGATCCTCAACGGGAGGGTTTACGGTAACGAGACAAGGGAACATGAATTGCCAAGACTGTGGGAATCAAGCCAAGAAAGATTGTCCTCATATGAGATGTCGTACTTGTTGTAAGAGCCGAGGGTTTGATTGCCAAACACACGTGAAGAGCACGTGGGTCTCGGCTGCTAAACGCCGTGAGAGACAGGCTCAGTTAGCTGTTTTGCCAGCTAAGCGTATAAGAGACGCTAACTCAAGGGGTGGTGGGGATGACGATGATGATGACAAAGAGGACGAGAAAAATGACAGTTGTGGTGGTGGCTCGGCTCTTGCTTGCACCCGTGTGGTTAATGCTAGTTCTTCAGGGTTAGAGACTAGTCACTTACCACCGGAGATAAGTTCCCCGGCTGTTTTCCGGTGTATGAGAGTCAGCTCAATCGACGATGAAGACGAAGAGTATGCTTATCAAACGGCTGTTAGCATTGGAGGACACGTGTTCAAAGGCATTCTCTACGACCAAGGTCCATCGTCAGATCACCACCGTTACAGCTCAAGCCTCAATGGCGAAACCTCTCATCAACACCATCTTAACCTCATGGACTCAACTCCTTCAGCCGCAACTACAAACGCCGTGACCGCCGTTAACACTAACAACGGATCTATTGACCCTTCTTCCCTTTACACTGCGGTGGCAACTCCGTTCAACGCCTTTGTCGCCGGTGGTACGCCTTTCTTTGCATCTTCTAGGTGTTGA

Protein Analysis

345

Amino Acids

37.93

Weight (kDa)

6.19

Isoelectric Point (pI)

54.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF702 PF05142 116 - 271 5.6e-63 Domain of unknown function (DUF702)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012802)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19790 AT1G19790 AT1G75520
fragaria_vesca FvH4_2g38950
malus_domestica MD08G1021500.v1.1 MD15G1019200.v1.1
prunus_persica Prupe.1G371500_v2.0.a1 Prupe.1G371500_v2.0.a1
pyrus_communis pycom08g01700 pycom15g01600
rosa_chinensis RchiOBHm_Chr6g0302041
rosa_laevigata RLG00000011200
rosa_multiflora Rmu_ssc0000160.1_g000001
rosa_roxburghii Rroxscaffold_7G00166150
rosa_rugosa Rorug06G0311300
rosa_samantha Rh6AG424100 Rh6CG437100
rosa_wichuraiana Rw6G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 188, 900, 921, 971
AclWI GGATC 3 cut(s) 72, 303, 949
AcuI CTGAAG 2 cut(s) 630, 879
AcvI CACGTG 3 cut(s) 448, 459, 778
AfaI GTAC 4 cut(s) 259, 275, 409, 1009
AfiI CCNNNNNNNGG 1 cut(s) 233
AflIII ACRYGT 3 cut(s) 445, 775, 777
AgsI TTSAA 4 cut(s) 164, 280, 784, 988
AhlI ACTAGT 1 cut(s) 659
AleI CACNNNNGTG 2 cut(s) 626, 971
AluBI AGCT 4 cut(s) 503, 515, 717, 834
AluI AGCT 4 cut(s) 503, 515, 717, 834
Alw21I GWGCWC 1 cut(s) 458
Alw26I GTCTC 6 cut(s) 292, 331, 469, 481, 522, 650
AlwI GGATC 3 cut(s) 72, 303, 949
Ama87I CYCGRG 1 cut(s) 226
ApeKI GCWGC 2 cut(s) 191, 470
AspS9I GGNCC 2 cut(s) 223, 806
AsuC2I CCSGG 1 cut(s) 689
AsuHPI GGTGA 2 cut(s) 316, 812
AvaI CYCGRG 1 cut(s) 226
AvaII GGWCC 2 cut(s) 223, 806
BbrPI CACGTG 3 cut(s) 448, 459, 778
BbsI GAAGAC 2 cut(s) 81, 738
Bbv12I GWGCWC 1 cut(s) 458
BbvI GCAGC 2 cut(s) 178, 457
BccI CCATC 2 cut(s) 817, 876
BceAI ACGGC 4 cut(s) 465, 771, 899, 908
BcgI CGANNNNNNTGC 2 cut(s) 725, 759
BcnI CCSGG 1 cut(s) 689
BcoDI GTCTC 6 cut(s) 292, 331, 469, 481, 522, 650
BcuI ACTAGT 1 cut(s) 659
BfaI CTAG 4 cut(s) 20, 639, 660, 1029
BglI GCCNNNNNGGC 1 cut(s) 846
BglII AGATCT 1 cut(s) 114
BisI GCNGC 4 cut(s) 189, 192, 471, 900
BlpI GCTNAGC 1 cut(s) 516
BlsI GCNGC 4 cut(s) 190, 193, 472, 901
BmcAI AGTACT 1 cut(s) 259
Bme1390I CCNGG 1 cut(s) 689
Bme18I GGWCC 2 cut(s) 223, 806
BmeT110I CYCGRG 1 cut(s) 226
BmgT120I GGNCC 2 cut(s) 223, 806
BmiI GGNNCC 1 cut(s) 225
BmrFI CCNGG 1 cut(s) 689
BmsI GCATC 1 cut(s) 1031
BoxI GACNNNNGTC 1 cut(s) 804
BpiI GAAGAC 2 cut(s) 81, 738
BplI GAGNNNNNCTC 2 cut(s) 478, 510
Bpu1102I GCTNAGC 1 cut(s) 516
BpuEI CTTGAG 2 cut(s) 523, 820
BpuMI CCSGG 1 cut(s) 689
BsaAI YACGTR 3 cut(s) 448, 459, 778
BsaBI GATNNNNATC 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 469
BsaJI CCNNGG 3 cut(s) 424, 687, 802
BsaWI WCCGGW 3 cut(s) 252, 673, 699
BsaXI ACNNNNNCTCC 4 cut(s) 272, 302, 762, 792
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse118I RCCGGY 2 cut(s) 301, 1001
Bse8I GATNNNNATC 1 cut(s) 51
BseDI CCNNGG 3 cut(s) 424, 687, 802
BseGI GGATG 1 cut(s) 559
BseJI GATNNNNATC 1 cut(s) 51
BseLI CCNNNNNNNGG 1 cut(s) 233
BseMII CTCAG 1 cut(s) 509
BseRI GAGGAG 1 cut(s) 141
BseXI GCAGC 2 cut(s) 178, 457
BsiHKAI GWGCWC 1 cut(s) 458
BsiHKCI CYCGRG 1 cut(s) 226
BsiSI CCGG 6 cut(s) 253, 302, 674, 689, 700, 1002
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 1 cut(s) 233
BsmAI GTCTC 6 cut(s) 292, 331, 469, 481, 522, 650
BsmBI CGTCTC 2 cut(s) 292, 522
BsmFI GGGAC 1 cut(s) 209
BsmI GAATGC 1 cut(s) 789
Bso31I GGTCTC 1 cut(s) 469
BsoBI CYCGRG 1 cut(s) 226
Bsp1286I GDGCHC 1 cut(s) 458
Bsp143I GATC 8 cut(s) 31, 46, 64, 114, 292, 308, 817, 941
Bsp1720I GCTNAGC 1 cut(s) 516
BspACI CCGC 4 cut(s) 188, 900, 921, 971
BspCNI CTCAG 1 cut(s) 508
BspHI TCATGA 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 225
BspPI GGATC 3 cut(s) 72, 303, 949
BspQI GCTCTTC 1 cut(s) 446
BspTNI GGTCTC 1 cut(s) 469
BsrFI RCCGGY 2 cut(s) 301, 1001
BssAI RCCGGY 2 cut(s) 301, 1001
BssECI CCNNGG 3 cut(s) 424, 687, 802
BssMI GATC 8 cut(s) 31, 46, 64, 114, 292, 308, 817, 941
BssT1I CCWWGG 1 cut(s) 802
Bst4CI ACNGT 4 cut(s) 331, 365, 593, 827
Bst6I CTCTTC 2 cut(s) 446, 732
BstBAI YACGTR 3 cut(s) 448, 459, 778
BstC8I GCNNGC 2 cut(s) 513, 619
BstDEI CTNAG 2 cut(s) 495, 516
BstF5I GGATG 1 cut(s) 559
BstKTI GATC 8 cut(s) 34, 49, 67, 117, 295, 311, 820, 944
BstMAI GTCTC 6 cut(s) 292, 331, 469, 481, 522, 650
BstMBI GATC 8 cut(s) 31, 46, 64, 114, 292, 308, 817, 941
BstMWI GCNNNNNNNGC 5 cut(s) 500, 517, 846, 920, 998
BstPAI GACNNNNGTC 1 cut(s) 804
BstSCI CCNGG 1 cut(s) 687
BstV1I GCAGC 2 cut(s) 178, 457
BstV2I GAAGAC 2 cut(s) 81, 738
BstX2I RGATCY 3 cut(s) 114, 308, 941
BstXI CCANNNNNNTGG 1 cut(s) 365
BstYI RGATCY 3 cut(s) 114, 308, 941
BtsCI GGATG 1 cut(s) 559
BtsI GCAGTG 1 cut(s) 966
BtsIMutI CAGTG 1 cut(s) 966
Cac8I GCNNGC 2 cut(s) 513, 619
CciI TCATGA 1 cut(s) 295
Cfr10I RCCGGY 2 cut(s) 301, 1001
Cfr13I GGNCC 2 cut(s) 223, 806
CseI GACGC 1 cut(s) 539
Csp6I GTAC 4 cut(s) 258, 274, 408, 1008
CviAII CATG 4 cut(s) 185, 296, 349, 880
CviQI GTAC 4 cut(s) 258, 274, 408, 1008
DdeI CTNAG 2 cut(s) 495, 516
DpnI GATC 8 cut(s) 33, 48, 66, 116, 294, 310, 819, 943
DpnII GATC 8 cut(s) 31, 46, 64, 114, 292, 308, 817, 941
Eam1104I CTCTTC 2 cut(s) 446, 732
EarI CTCTTC 2 cut(s) 446, 732
Eco130I CCWWGG 1 cut(s) 802
Eco31I GGTCTC 1 cut(s) 469
Eco47I GGWCC 2 cut(s) 223, 806
Eco57I CTGAAG 2 cut(s) 630, 879
Eco72I CACGTG 3 cut(s) 448, 459, 778
Eco88I CYCGRG 1 cut(s) 226
EcoT14I CCWWGG 1 cut(s) 802
ErhI CCWWGG 1 cut(s) 802
Esp3I CGTCTC 2 cut(s) 292, 522
FaeI CATG 4 cut(s) 188, 299, 352, 883
FaqI GGGAC 1 cut(s) 209
FatI CATG 4 cut(s) 184, 295, 348, 879
FauNDI CATATG 1 cut(s) 396
Fnu4HI GCNGC 4 cut(s) 189, 192, 471, 900
FokI GGATG 1 cut(s) 566
Fsp4HI GCNGC 4 cut(s) 189, 192, 471, 900
FspBI CTAG 4 cut(s) 20, 639, 660, 1029
GluI GCNGC 4 cut(s) 189, 192, 471, 900
HapII CCGG 6 cut(s) 253, 302, 674, 689, 700, 1002
HgaI GACGC 1 cut(s) 539
Hin1II CATG 4 cut(s) 188, 299, 352, 883
HincII GTYRAC 1 cut(s) 928
HindII GTYRAC 1 cut(s) 928
HinfI GANTC 3 cut(s) 370, 711, 884
HpaI GTTAAC 1 cut(s) 928
HpaII CCGG 6 cut(s) 253, 302, 674, 689, 700, 1002
HphI GGTGA 2 cut(s) 316, 812
Hpy166II GTNNAC 2 cut(s) 327, 928
Hpy188I TCNGA 3 cut(s) 267, 292, 817
Hpy188III TCNNGA 3 cut(s) 56, 226, 296
Hpy8I GTNNAC 2 cut(s) 327, 928
Hpy99I CGWCG 2 cut(s) 287, 728
HpyAV CCTTC 2 cut(s) 903, 963
HpyCH4III ACNGT 4 cut(s) 331, 365, 593, 827
HpyCH4IV ACGT 4 cut(s) 282, 447, 458, 777
HpyCH4V TGCA 2 cut(s) 621, 1022
HpyF10VI GCNNNNNNNGC 5 cut(s) 500, 517, 846, 920, 998
HpyF3I CTNAG 2 cut(s) 495, 516
HpySE526I ACGT 4 cut(s) 282, 447, 458, 777
Hsp92II CATG 4 cut(s) 188, 299, 352, 883
KspAI GTTAAC 1 cut(s) 928
Kzo9I GATC 8 cut(s) 31, 46, 64, 114, 292, 308, 817, 941
LguI GCTCTTC 1 cut(s) 446
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 9 cut(s) 266, 315, 476, 525, 633, 687, 702, 713, 1015
Lsp1109I GCAGC 2 cut(s) 178, 457
LweI GCATC 1 cut(s) 1031
MaeI CTAG 4 cut(s) 20, 639, 660, 1029
MaeII ACGT 4 cut(s) 282, 447, 458, 777
MaeIII GTNAC 5 cut(s) 236, 331, 662, 827, 916
MalI GATC 8 cut(s) 33, 48, 66, 116, 294, 310, 819, 943
MboI GATC 8 cut(s) 31, 46, 64, 114, 292, 308, 817, 941
MboII GAAGA 7 cut(s) 86, 463, 636, 743, 749, 948, 1017
MflI RGATCY 3 cut(s) 114, 308, 941
MhlI GDGCHC 1 cut(s) 458
MluCI AATT 2 cut(s) 88, 352
MlyI GAGTC 2 cut(s) 720, 878
MmeI TCCRAC 1 cut(s) 221
MseI TTAA 3 cut(s) 633, 873, 927
MslI CAYNNNNRTG 2 cut(s) 626, 971
MspI CCGG 6 cut(s) 253, 302, 674, 689, 700, 1002
MspR9I CCNGG 1 cut(s) 689
Mva1269I GAATGC 1 cut(s) 789
MwoI GCNNNNNNNGC 5 cut(s) 500, 517, 846, 920, 998
NciI CCSGG 1 cut(s) 689
NdeI CATATG 1 cut(s) 396
NdeII GATC 8 cut(s) 31, 46, 64, 114, 292, 308, 817, 941
NlaIII CATG 4 cut(s) 188, 299, 352, 883
NlaIV GGNNCC 1 cut(s) 225
NmeAIII GCCGAG 3 cut(s) 446, 449, 587
NmuCI GTSAC 2 cut(s) 662, 916
OliI CACNNNNGTG 2 cut(s) 626, 971
PagI TCATGA 1 cut(s) 295
PciSI GCTCTTC 1 cut(s) 446
PcsI WCGNNNNNNNCGW 2 cut(s) 288, 732
PctI GAATGC 1 cut(s) 789
PfeI GAWTC 1 cut(s) 370
PkrI GCNGC 4 cut(s) 190, 193, 472, 901
PleI GAGTC 2 cut(s) 719, 878
PmaCI CACGTG 3 cut(s) 448, 459, 778
PmlI CACGTG 3 cut(s) 448, 459, 778
PpsI GAGTC 2 cut(s) 719, 878
Ppu21I YACGTR 3 cut(s) 448, 459, 778
PshAI GACNNNNGTC 1 cut(s) 804
PspCI CACGTG 3 cut(s) 448, 459, 778
PspN4I GGNNCC 1 cut(s) 225
PspPI GGNCC 2 cut(s) 223, 806
PsuI RGATCY 3 cut(s) 114, 308, 941
RsaI GTAC 4 cut(s) 259, 275, 409, 1009
RsaNI GTAC 4 cut(s) 258, 274, 408, 1008
RseI CAYNNNNRTG 2 cut(s) 626, 971
SapI GCTCTTC 1 cut(s) 446
SaqAI TTAA 3 cut(s) 633, 873, 927
SatI GCNGC 4 cut(s) 189, 192, 471, 900
Sau3AI GATC 8 cut(s) 31, 46, 64, 114, 292, 308, 817, 941
Sau96I GGNCC 2 cut(s) 223, 806
ScaI AGTACT 1 cut(s) 259
SchI GAGTC 2 cut(s) 720, 878
ScrFI CCNGG 1 cut(s) 689
SduI GDGCHC 1 cut(s) 458
SfaNI GCATC 1 cut(s) 1031
SgrAI CRCCGGYG 1 cut(s) 1001
SinI GGWCC 2 cut(s) 223, 806
SmiMI CAYNNNNRTG 2 cut(s) 626, 971
SmlI CTYRAG 2 cut(s) 538, 835
SmoI CTYRAG 2 cut(s) 538, 835
SpeI ACTAGT 1 cut(s) 659
Sse9I AATT 2 cut(s) 88, 352
SsiI CCGC 4 cut(s) 188, 900, 921, 971
SspI AATATT 1 cut(s) 158
SspMI CTAG 4 cut(s) 20, 639, 660, 1029
StyD4I CCNGG 1 cut(s) 687
StyI CCWWGG 1 cut(s) 802
TaaI ACNGT 4 cut(s) 331, 365, 593, 827
TaiI ACGT 4 cut(s) 285, 450, 461, 780
TaqI TCGA 1 cut(s) 723
TasI AATT 2 cut(s) 88, 352
TatI WGTACW 2 cut(s) 257, 273
TauI GCSGC 2 cut(s) 191, 902
TfiI GAWTC 1 cut(s) 370
Tru1I TTAA 3 cut(s) 633, 873, 927
Tru9I TTAA 3 cut(s) 633, 873, 927
TscAI CASTG 1 cut(s) 973
TseFI GTSAC 2 cut(s) 662, 916
TseI GCWGC 2 cut(s) 191, 470
Tsp45I GTSAC 2 cut(s) 662, 916
TspDTI ATGAA 3 cut(s) 87, 365, 744
TspGWI ACGGA 2 cut(s) 954, 972
TspRI CASTG 1 cut(s) 973
VpaK11BI GGWCC 2 cut(s) 223, 806
XspI CTAG 4 cut(s) 20, 639, 660, 1029
ZrmI AGTACT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.