Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012802

Physical Location & Seq

Genomic Coordinates Reverse (-)

28351522 .. 28353549

Gene Structure 2028 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G75520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCAGGGTTCTTCTATCTAGGAGGGAGAGACAACAACAGCAACAACAACAAGCAAGATCATCATCAAGTAGACAAGGATCATCATCATCAAGACAAGAGCAATTATCTTTATCTTTACAAAGACGAGATCTATAATAACAACAAGGGTTTCGAGATTTGGCCTCCGCAATACTTCCAACAACAAGAACATCAACAACAACAACAACAGCAACAACATGCCTCAGCTCCTGCAAACTTCTACTCATTTGGAATGGTTCCTAGCGGAAGCAGCAGCAACAACAACAATAACCGTAGCCGGAGTTTATACTTCAACGTAGTCTCCGATCATGAGCCGGGAGGGTTCACGGTGACGAGACAAGGAGGTATGAATTGTCAAGATTGTGGAAATCAAGCTAAGAAAGATTGTCCTCATATGAGATGTAGAACTTGTTGTAAAAGCCGAGGCTTTCATTGTCAAACTCACGTTAAGAGCACTTGGGTTCCTGCTGCTAAACGTCGTGAGCGTTTAGCCCAACTCGCTTCCTTGCAGCACCACTCAGCCTCCAGCCGTGAAACGCAAAACGCCAAACGCCTTCGAGAAGCTAGTGGTGGTGATAATAATGATGATAAAGACCATAGTGGTGGTGGTGGATCGGCTCTTGCTAATACCCGTGTGGTGAATGCTAATTCTAATTCAGGGTTGGAGGTGAGTCAACACTTACCACCGGAGGTTAACTCACCGGCGATATTCCGGTGCGTTAGAGTGAGCTCAATAGAAGAGGATGAAGATGATCAAGCATATGCTTACCAAACGGCTGTGAACATTGGAGGCCATATCTTCAAAGGCATTCTCTATGACCAAGGACCAGAACATCAAGATAATCATCACCTTAACCTACTTGCTTCCACTGCAACCACCACCAATGTGGAGGAGACCGCCACTAAGACTGTCACCGGTAACAATAATAATGGATTAATGCTTGATCCTTCTTCGCTTTACCCAGCTCAACTCAACTCCTTCATCGCGGGTACGCCATTCTTCACACCTCCGAGGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009555 GO:0009791 GO:0009908 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF702

Protein Analysis

346

Amino Acids

38.55

Weight (kDa)

6.67

Isoelectric Point (pI)

52.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF702	PF05142	122 - 284	1.4e-62	Domain of unknown function (DUF702)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19790 AT1G19790 AT1G75520
fragaria_vesca	FvH4_2g38950
malus_domestica	MD08G1021500.v1.1 MD15G1019200.v1.1
prunus_persica	Prupe.1G371500_v2.0.a1 Prupe.1G371500_v2.0.a1
pyrus_communis	pycom08g01700 pycom15g01600
rosa_chinensis	RchiOBHm_Chr6g0302041
rosa_laevigata	RLG00000011200
rosa_multiflora	Rmu_ssc0000160.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166150
rosa_rugosa	Rorug06G0311300
rosa_samantha	Rh6AG424100 Rh6CG437100
rosa_wichuraiana	Rw6G036730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	72
AccII	CGCG	1 cut(s)	1007
AciI	CCGC	4 cut(s)	167, 264, 918, 1007
AclWI	GGATC	3 cut(s)	87, 640, 959
AfaI	GTAC	1 cut(s)	1012
AgeI	ACCGGT	1 cut(s)	935
AgsI	TTSAA	2 cut(s)	313, 823
AleI	CACNNNNGTG	1 cut(s)	905
AluBI	AGCT	5 cut(s)	227, 395, 584, 750, 986
AluI	AGCT	5 cut(s)	227, 395, 584, 750, 986
Alw21I	GWGCWC	2 cut(s)	476, 752
Alw26I	GTCTC	4 cut(s)	24, 325, 349, 908
AlwI	GGATC	3 cut(s)	87, 640, 959
AlwNI	CAGNNNCTG	1 cut(s)	230
AoxI	GGCC	2 cut(s)	161, 811
ApeKI	GCWGC	4 cut(s)	270, 273, 488, 529
AseI	ATTAAT	1 cut(s)	956
AsiGI	ACCGGT	1 cut(s)	935
AspS9I	GGNCC	1 cut(s)	845
AsuC2I	CCSGG	1 cut(s)	336
AsuHPI	GGTGA	7 cut(s)	361, 605, 670, 700, 711, 860, 925
AvaII	GGWCC	1 cut(s)	845
BanII	GRGCYC	1 cut(s)	752
Bbv12I	GWGCWC	2 cut(s)	476, 752
BbvCI	CCTCAGC	1 cut(s)	223
BbvI	GCAGC	4 cut(s)	282, 285, 475, 541
BceAI	ACGGC	2 cut(s)	534, 810
BclI	TGATCA	1 cut(s)	772
BcnI	CCSGG	1 cut(s)	336
BcoDI	GTCTC	4 cut(s)	24, 325, 349, 908
BfaI	CTAG	3 cut(s)	20, 261, 585
BglII	AGATCT	1 cut(s)	129
BisI	GCNGC	4 cut(s)	271, 274, 489, 530
BlsI	GCNGC	4 cut(s)	272, 275, 490, 531
Bme1390I	CCNGG	1 cut(s)	336
Bme18I	GGWCC	1 cut(s)	845
BmgT120I	GGNCC	1 cut(s)	845
BmiI	GGNNCC	2 cut(s)	258, 483
BmrFI	CCNGG	1 cut(s)	336
BplI	GAGNNNNNCTC	2 cut(s)	701, 733
BpmI	CTGGAG	1 cut(s)	529
Bpu10I	CCTNAGC	1 cut(s)	223
BpuMI	CCSGG	1 cut(s)	336
BsaBI	GATNNNNATC	3 cut(s)	63, 84, 864
BsaI	GGTCTC	1 cut(s)	908
BsaJI	CCNNGG	3 cut(s)	442, 841, 1031
BsaWI	WCCGGW	3 cut(s)	706, 732, 935
BsaXI	ACNNNNNCTCC	4 cut(s)	305, 335, 527, 557
Bse118I	RCCGGY	2 cut(s)	721, 935
Bse8I	GATNNNNATC	3 cut(s)	63, 84, 864
BseDI	CCNNGG	3 cut(s)	442, 841, 1031
BseGI	GGATG	1 cut(s)	769
BseJI	GATNNNNATC	3 cut(s)	63, 84, 864
BseMII	CTCAG	2 cut(s)	237, 552
BseRI	GAGGAG	1 cut(s)	926
BseXI	GCAGC	4 cut(s)	282, 285, 475, 541
BseYI	CCCAGC	1 cut(s)	982
Bsh1236I	CGCG	1 cut(s)	1007
BshFI	GGCC	2 cut(s)	163, 813
BshTI	ACCGGT	1 cut(s)	935
BsiHKAI	GWGCWC	2 cut(s)	476, 752
BsiSI	CCGG	6 cut(s)	298, 335, 707, 722, 733, 936
BsmAI	GTCTC	4 cut(s)	24, 325, 349, 908
BsmI	GAATGC	2 cut(s)	667, 828
BsnI	GGCC	2 cut(s)	163, 813
Bso31I	GGTCTC	1 cut(s)	908
Bsp1286I	GDGCHC	2 cut(s)	476, 752
Bsp143I	GATC	7 cut(s)	58, 79, 129, 325, 632, 772, 964
BspACI	CCGC	4 cut(s)	167, 264, 918, 1007
BspANI	GGCC	2 cut(s)	163, 813
BspCNI	CTCAG	2 cut(s)	236, 551
BspFNI	CGCG	1 cut(s)	1007
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	2 cut(s)	258, 483
BspPI	GGATC	3 cut(s)	87, 640, 959
BspTNI	GGTCTC	1 cut(s)	908
BsrFI	RCCGGY	2 cut(s)	721, 935
BssAI	RCCGGY	2 cut(s)	721, 935
BssECI	CCNNGG	3 cut(s)	442, 841, 1031
BssMI	GATC	7 cut(s)	58, 79, 129, 325, 632, 772, 964
BssT1I	CCWWGG	1 cut(s)	841
Bst4CI	ACNGT	3 cut(s)	293, 349, 931
Bst6I	CTCTTC	1 cut(s)	753
BstDEI	CTNAG	4 cut(s)	223, 396, 538, 924
BstF5I	GGATG	1 cut(s)	769
BstFNI	CGCG	1 cut(s)	1007
BstKTI	GATC	7 cut(s)	61, 82, 132, 328, 635, 775, 967
BstMAI	GTCTC	4 cut(s)	24, 325, 349, 908
BstMBI	GATC	7 cut(s)	58, 79, 129, 325, 632, 772, 964
BstMWI	GCNNNNNNNGC	3 cut(s)	270, 518, 890
BstNSI	RCATGY	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	334
BstUI	CGCG	1 cut(s)	1007
BstV1I	GCAGC	4 cut(s)	282, 285, 475, 541
BstX2I	RGATCY	1 cut(s)	129
BstXI	CCANNNNNNTGG	2 cut(s)	623, 907
BstYI	RGATCY	1 cut(s)	129
BsuRI	GGCC	2 cut(s)	163, 813
BtgZI	GCGATG	1 cut(s)	988
BtsCI	GGATG	1 cut(s)	769
BtsI	GCAGTG	1 cut(s)	888
BtsIMutI	CAGTG	1 cut(s)	888
CaiI	CAGNNNCTG	1 cut(s)	230
CciI	TCATGA	1 cut(s)	328
Cfr10I	RCCGGY	2 cut(s)	721, 935
Cfr13I	GGNCC	1 cut(s)	845
Csp6I	GTAC	1 cut(s)	1011
CspAI	ACCGGT	1 cut(s)	935
CviAII	CATG	2 cut(s)	218, 329
CviQI	GTAC	1 cut(s)	1011
DdeI	CTNAG	4 cut(s)	223, 396, 538, 924
DpnI	GATC	7 cut(s)	60, 81, 131, 327, 634, 774, 966
DpnII	GATC	7 cut(s)	58, 79, 129, 325, 632, 772, 964
Eam1104I	CTCTTC	1 cut(s)	753
EarI	CTCTTC	1 cut(s)	753
Ecl136II	GAGCTC	1 cut(s)	750
Eco130I	CCWWGG	1 cut(s)	841
Eco24I	GRGCYC	1 cut(s)	752
Eco31I	GGTCTC	1 cut(s)	908
Eco47I	GGWCC	1 cut(s)	845
Eco53kI	GAGCTC	1 cut(s)	750
EcoICRI	GAGCTC	1 cut(s)	750
EcoT14I	CCWWGG	1 cut(s)	841
EcoT38I	GRGCYC	1 cut(s)	752
ErhI	CCWWGG	1 cut(s)	841
FaeI	CATG	2 cut(s)	221, 332
FatI	CATG	2 cut(s)	217, 328
FauI	CCCGC	1 cut(s)	1000
FauNDI	CATATG	2 cut(s)	414, 781
FbaI	TGATCA	1 cut(s)	772
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	4 cut(s)	271, 274, 489, 530
FokI	GGATG	1 cut(s)	776
FriOI	GRGCYC	1 cut(s)	752
Fsp4HI	GCNGC	4 cut(s)	271, 274, 489, 530
FspBI	CTAG	3 cut(s)	20, 261, 585
GluI	GCNGC	4 cut(s)	271, 274, 489, 530
GsaI	CCCAGC	1 cut(s)	986
GsuI	CTGGAG	1 cut(s)	529
HaeIII	GGCC	2 cut(s)	163, 813
HapII	CCGG	6 cut(s)	298, 335, 707, 722, 733, 936
Hin1II	CATG	2 cut(s)	221, 332
HincII	GTYRAC	2 cut(s)	695, 715
HindII	GTYRAC	2 cut(s)	695, 715
HinfI	GANTC	1 cut(s)	691
HpaI	GTTAAC	1 cut(s)	715
HpaII	CCGG	6 cut(s)	298, 335, 707, 722, 733, 936
HphI	GGTGA	7 cut(s)	361, 605, 670, 700, 711, 860, 925
Hpy166II	GTNNAC	5 cut(s)	73, 345, 695, 715, 802
Hpy188I	TCNGA	2 cut(s)	325, 1032
Hpy188III	TCNNGA	8 cut(s)	92, 154, 329, 377, 500, 578, 857, 1038
Hpy8I	GTNNAC	5 cut(s)	73, 345, 695, 715, 802
Hpy99I	CGWCG	1 cut(s)	501
HpyAV	CCTTC	3 cut(s)	584, 978, 1009
HpyCH4III	ACNGT	3 cut(s)	293, 349, 931
HpyCH4IV	ACGT	3 cut(s)	315, 465, 496
HpyCH4V	TGCA	3 cut(s)	233, 529, 893
HpyF10VI	GCNNNNNNNGC	3 cut(s)	270, 518, 890
HpyF3I	CTNAG	4 cut(s)	223, 396, 538, 924
HpySE526I	ACGT	3 cut(s)	315, 465, 496
Hsp92II	CATG	2 cut(s)	221, 332
Ksp22I	TGATCA	1 cut(s)	772
KspAI	GTTAAC	1 cut(s)	715
Kzo9I	GATC	7 cut(s)	58, 79, 129, 325, 632, 772, 964
LmnI	GCTCC	1 cut(s)	232
Lsp1109I	GCAGC	4 cut(s)	282, 285, 475, 541
MaeI	CTAG	3 cut(s)	20, 261, 585
MaeII	ACGT	3 cut(s)	315, 465, 496
MaeIII	GTNAC	3 cut(s)	349, 931, 938
MalI	GATC	7 cut(s)	60, 81, 131, 327, 634, 774, 966
MboI	GATC	7 cut(s)	58, 79, 129, 325, 632, 772, 964
MboII	GAAGA	6 cut(s)	4, 770, 779, 811, 963, 1012
MflI	RGATCY	1 cut(s)	129
MhlI	GDGCHC	2 cut(s)	476, 752
MluCI	AATT	4 cut(s)	103, 370, 667, 673
MlyI	GAGTC	1 cut(s)	700
MmeI	TCCRAC	2 cut(s)	202, 663
MseI	TTAA	4 cut(s)	468, 714, 873, 956
MslI	CAYNNNNRTG	2 cut(s)	621, 905
MspI	CCGG	6 cut(s)	298, 335, 707, 722, 733, 936
MspR9I	CCNGG	1 cut(s)	336
Mva1269I	GAATGC	2 cut(s)	667, 828
MvnI	CGCG	1 cut(s)	1007
MwoI	GCNNNNNNNGC	3 cut(s)	270, 518, 890
NciI	CCSGG	1 cut(s)	336
NdeI	CATATG	2 cut(s)	414, 781
NdeII	GATC	7 cut(s)	58, 79, 129, 325, 632, 772, 964
NlaIII	CATG	2 cut(s)	221, 332
NlaIV	GGNNCC	2 cut(s)	258, 483
NmeAIII	GCCGAG	1 cut(s)	467
NmuCI	GTSAC	2 cut(s)	349, 931
NspI	RCATGY	1 cut(s)	221
OliI	CACNNNNGTG	1 cut(s)	905
PagI	TCATGA	1 cut(s)	328
PcsI	WCGNNNNNNNCGW	2 cut(s)	321, 502
PctI	GAATGC	2 cut(s)	667, 828
PinAI	ACCGGT	1 cut(s)	935
PkrI	GCNGC	4 cut(s)	272, 275, 490, 531
PleI	GAGTC	1 cut(s)	699
PpsI	GAGTC	1 cut(s)	699
PshBI	ATTAAT	1 cut(s)	956
Psp124BI	GAGCTC	1 cut(s)	752
PspFI	CCCAGC	1 cut(s)	982
PspN4I	GGNNCC	2 cut(s)	258, 483
PspPI	GGNCC	1 cut(s)	845
PstNI	CAGNNNCTG	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	129
RsaI	GTAC	1 cut(s)	1012
RsaNI	GTAC	1 cut(s)	1011
RseI	CAYNNNNRTG	2 cut(s)	621, 905
SacI	GAGCTC	1 cut(s)	752
SaqAI	TTAA	4 cut(s)	468, 714, 873, 956
SatI	GCNGC	4 cut(s)	271, 274, 489, 530
Sau3AI	GATC	7 cut(s)	58, 79, 129, 325, 632, 772, 964
Sau96I	GGNCC	1 cut(s)	845
SchI	GAGTC	1 cut(s)	700
ScrFI	CCNGG	1 cut(s)	336
SduI	GDGCHC	2 cut(s)	476, 752
SgrAI	CRCCGGYG	1 cut(s)	721
SinI	GGWCC	1 cut(s)	845
SmiMI	CAYNNNNRTG	2 cut(s)	621, 905
Sse9I	AATT	4 cut(s)	103, 370, 667, 673
SsiI	CCGC	4 cut(s)	167, 264, 918, 1007
SspMI	CTAG	3 cut(s)	20, 261, 585
SstI	GAGCTC	1 cut(s)	752
StyD4I	CCNGG	1 cut(s)	334
StyI	CCWWGG	1 cut(s)	841
TaaI	ACNGT	3 cut(s)	293, 349, 931
TaiI	ACGT	3 cut(s)	318, 468, 499
TaqI	TCGA	2 cut(s)	153, 577
TasI	AATT	4 cut(s)	103, 370, 667, 673
Tru1I	TTAA	4 cut(s)	468, 714, 873, 956
Tru9I	TTAA	4 cut(s)	468, 714, 873, 956
TscAI	CASTG	1 cut(s)	895
TseFI	GTSAC	2 cut(s)	349, 931
TseI	GCWGC	4 cut(s)	270, 273, 488, 529
Tsp45I	GTSAC	2 cut(s)	349, 931
TspDTI	ATGAA	4 cut(s)	383, 440, 780, 991
TspRI	CASTG	1 cut(s)	895
VpaK11BI	GGWCC	1 cut(s)	845
VspI	ATTAAT	1 cut(s)	956
XceI	RCATGY	1 cut(s)	221
XcmI	CCANNNNNNNNNTGG	2 cut(s)	623, 904
XmiI	GTMKAC	1 cut(s)	72
XspI	CTAG	3 cut(s)	20, 261, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.