RLG00000011200

Protein SHI RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0012802
Physical Location & Seq
Reverse (-)
7587775 .. 7590752
2978 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011200

Sequence Viewer

Length: 1020 bp
ATGGCTGGGTTCTTCGGTAATTTAGGGGGAAGAGATCAAGGGCCAAGAAACAAACAAGACGGAGACGATGAAAGAGGAGGAAATTTAAACCTGTTTTCGTACGGAAACGAAGAGATCTACAACAACAAGGGGGGTTTCGAGTTATGGCCACAGTATCATCCTCACCATCCTCATCATCATCAGCAAAGCTTGAACTACTACGCGTTTGGGGTGGATCCTAGCCGTAATAACAACCACAACAACTTGGAGGGCAACGTCTCGGATGACTCATCTTCGGGGTTGAGACTCACTGTGATGCGACAAGGAAGCGGCGGTGGCGGTAGTGGTCTAGGATCGGGCGGAATGAATTGTCAGGATTGCGGGAATCAAGCTAAGAAAGACTGTCCTCACTTGCGGTGCCGAACCTGTTGCAAGAGCCGAGGGTTTCAGTGCCAAACACACGTCAAGAGCACTTGGGTTCCTGCCGCGAAACGCCGCGAGAGGCAGGAACAATTCTCTGCTCTTCAGCAACAACAACAACAACAACAGCAGTTACAGTTTCCGAAAAGGCAGAGAGACAATCAAGCAGGAGGAGCTGGAGGCTCTTCTCTAGCCTGCGTTCGTATACCCACTAACACGTCAGGGTTGGAGCTTGCACCATTTCCAGCTGAGGTGAGCTCGCCAGCCCTGTTCCGGTGTGTGAGAGTCAGTGCAATGGACGATGTGGAGGAGCAGTACGCGTACCAGACGGCGGTGAACATTGGAGGGCATGTGTTCAAGGGACTTCTCTACGATCAAGGACTGGATGGTCATTACACAAGCGCAACCACCGCCGGCGATAGCTCCTCAGGCCAACAAGACGGAGGAGGCGGAGGGGGACATCATCATAATAATCAACAGCAACTTAATCTTATAACCAACACCACAAGCACAAGTGCCAACCCACCTACGGCGACATTGCTCGACCCTACGCTGGTGTTTCCGACTCCGCTGAATGCTTTTGTGGCTGGTACGCAATACTTCCCACCTCCGAGGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF702

Protein Analysis

340

Amino Acids

36.68

Weight (kDa)

6.91

Isoelectric Point (pI)

56.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF702 PF05142 114 - 262 3.1e-64 Domain of unknown function (DUF702)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012802)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19790 AT1G19790 AT1G75520
fragaria_vesca FvH4_2g38950
malus_domestica MD08G1021500.v1.1 MD15G1019200.v1.1
prunus_persica Prupe.1G371500_v2.0.a1 Prupe.1G371500_v2.0.a1
pyrus_communis pycom08g01700 pycom15g01600
rosa_chinensis RchiOBHm_Chr6g0302041
rosa_laevigata RLG00000011200
rosa_multiflora Rmu_ssc0000160.1_g000001
rosa_roxburghii Rroxscaffold_7G00166150
rosa_rugosa Rorug06G0311300
rosa_samantha Rh6AG424100 Rh6CG437100
rosa_wichuraiana Rw6G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 893
AasI GACNNNNNNGTC 1 cut(s) 786
AccB1I GGYRCC 1 cut(s) 396
AccI GTMKAC 1 cut(s) 604
AccII CGCG 4 cut(s) 203, 467, 477, 719
AclWI GGATC 3 cut(s) 209, 222, 340
AcoI YGGCCR 1 cut(s) 146
AcsI RAATTY 1 cut(s) 82
AcuI CTGAAG 1 cut(s) 488
AfaI GTAC 4 cut(s) 101, 716, 722, 991
AfiI CCNNNNNNNGG 4 cut(s) 672, 730, 928, 952
AflIII ACRYGT 4 cut(s) 201, 439, 615, 717
AgsI TTSAA 2 cut(s) 193, 757
AjiI CACGTC 2 cut(s) 442, 618
AluBI AGCT 7 cut(s) 189, 371, 575, 631, 647, 657, 822
AluI AGCT 7 cut(s) 189, 371, 575, 631, 647, 657, 822
Alw21I GWGCWC 2 cut(s) 452, 659
Alw26I GTCTC 4 cut(s) 57, 262, 277, 549
AlwI GGATC 3 cut(s) 209, 222, 340
AoxI GGCC 3 cut(s) 41, 146, 829
ApoI RAATTY 1 cut(s) 82
AspLEI GCGC 1 cut(s) 803
AspS9I GGNCC 1 cut(s) 41
AsuHPI GGTGA 3 cut(s) 155, 664, 745
AxyI CCTNAGG 1 cut(s) 826
BalI TGGCCA 1 cut(s) 148
BamHI GGATCC 1 cut(s) 214
BanI GGYRCC 1 cut(s) 396
BanII GRGCYC 1 cut(s) 659
Bbv12I GWGCWC 2 cut(s) 452, 659
BbvCI CCTCAGC 1 cut(s) 648
BccI CCATC 2 cut(s) 174, 779
BceAI ACGGC 3 cut(s) 207, 744, 945
BcgI CGANNNNNNTGC 2 cut(s) 390, 424
BcoDI GTCTC 4 cut(s) 57, 262, 277, 549
BfaI CTAG 3 cut(s) 219, 329, 590
BglII AGATCT 1 cut(s) 114
BisI GCNGC 3 cut(s) 310, 465, 475
BlsI GCNGC 3 cut(s) 311, 466, 476
BmgBI CACGTC 2 cut(s) 442, 618
BmgT120I GGNCC 1 cut(s) 41
BmiI GGNNCC 3 cut(s) 216, 398, 459
BmsI GCATC 1 cut(s) 285
BplI GAGNNNNNCTC 2 cut(s) 641, 673
BpmI CTGGAG 1 cut(s) 597
Bpu10I CCTNAGC 1 cut(s) 648
BsaJI CCNNGG 2 cut(s) 418, 1010
BsaWI WCCGGW 1 cut(s) 672
BsaXI ACNNNNNCTCC 4 cut(s) 698, 728, 735, 765
Bsc4I CCNNNNNNNGG 4 cut(s) 672, 730, 928, 952
Bse118I RCCGGY 1 cut(s) 812
Bse1I ACTGG 1 cut(s) 786
Bse21I CCTNAGG 1 cut(s) 826
Bse3DI GCAATG 2 cut(s) 699, 935
BseDI CCNNGG 2 cut(s) 418, 1010
BseGI GGATG 4 cut(s) 157, 166, 268, 790
BseLI CCNNNNNNNGG 4 cut(s) 672, 730, 928, 952
BseMI GCAATG 2 cut(s) 699, 935
BseMII CTCAG 2 cut(s) 639, 840
BseNI ACTGG 1 cut(s) 786
BseRI GAGGAG 5 cut(s) 90, 585, 722, 814, 858
BseYI CCCAGC 1 cut(s) 5
Bsh1236I CGCG 4 cut(s) 203, 467, 477, 719
BshFI GGCC 3 cut(s) 43, 148, 831
BshNI GGYRCC 1 cut(s) 396
BsiHKAI GWGCWC 2 cut(s) 452, 659
BsiSI CCGG 2 cut(s) 673, 813
BsiWI CGTACG 1 cut(s) 99
BslFI GGGAC 2 cut(s) 774, 870
BslI CCNNNNNNNGG 4 cut(s) 672, 730, 928, 952
BsmAI GTCTC 4 cut(s) 57, 262, 277, 549
BsmBI CGTCTC 2 cut(s) 57, 262
BsmFI GGGAC 2 cut(s) 774, 870
BsmI GAATGC 1 cut(s) 979
BsnI GGCC 3 cut(s) 43, 148, 831
Bsp1286I GDGCHC 2 cut(s) 452, 659
Bsp143I GATC 5 cut(s) 34, 114, 214, 332, 772
BspANI GGCC 3 cut(s) 43, 148, 831
BspCNI CTCAG 2 cut(s) 640, 839
BspFNI CGCG 4 cut(s) 203, 467, 477, 719
BspLI GGNNCC 3 cut(s) 216, 398, 459
BspPI GGATC 3 cut(s) 209, 222, 340
BspQI GCTCTTC 2 cut(s) 507, 589
BspT107I GGYRCC 1 cut(s) 396
BsrDI GCAATG 2 cut(s) 699, 935
BsrFI RCCGGY 1 cut(s) 812
BsrI ACTGG 1 cut(s) 786
BssAI RCCGGY 1 cut(s) 812
BssECI CCNNGG 2 cut(s) 418, 1010
BssMI GATC 5 cut(s) 34, 114, 214, 332, 772
BssNAI GTATAC 1 cut(s) 605
Bst1107I GTATAC 1 cut(s) 605
Bst4CI ACNGT 4 cut(s) 153, 292, 383, 537
Bst6I CTCTTC 4 cut(s) 25, 105, 507, 589
BstC8I GCNNGC 5 cut(s) 595, 633, 659, 663, 814
BstDEI CTNAG 4 cut(s) 372, 648, 826, 1017
BstF5I GGATG 4 cut(s) 157, 166, 268, 790
BstFNI CGCG 4 cut(s) 203, 467, 477, 719
BstHHI GCGC 1 cut(s) 803
BstKTI GATC 5 cut(s) 37, 117, 217, 335, 775
BstMAI GTCTC 4 cut(s) 57, 262, 277, 549
BstMBI GATC 5 cut(s) 34, 114, 214, 332, 772
BstMWI GCNNNNNNNGC 5 cut(s) 315, 572, 809, 828, 983
BstNSI RCATGY 1 cut(s) 752
BstUI CGCG 4 cut(s) 203, 467, 477, 719
BstX2I RGATCY 2 cut(s) 114, 214
BstYI RGATCY 2 cut(s) 114, 214
BstZ17I GTATAC 1 cut(s) 605
Bsu36I CCTNAGG 1 cut(s) 826
BsuRI GGCC 3 cut(s) 43, 148, 831
BtrI CACGTC 2 cut(s) 442, 618
BtsCI GGATG 4 cut(s) 157, 166, 268, 790
BtsIMutI CAGTG 3 cut(s) 288, 434, 694
Cac8I GCNNGC 5 cut(s) 595, 633, 659, 663, 814
CfoI GCGC 1 cut(s) 803
Cfr10I RCCGGY 1 cut(s) 812
Cfr13I GGNCC 1 cut(s) 41
Csp6I GTAC 4 cut(s) 100, 715, 721, 990
CviAII CATG 1 cut(s) 749
CviQI GTAC 4 cut(s) 100, 715, 721, 990
DdeI CTNAG 4 cut(s) 372, 648, 826, 1017
DpnI GATC 5 cut(s) 36, 116, 216, 334, 774
DpnII GATC 5 cut(s) 34, 114, 214, 332, 772
DraI TTTAAA 1 cut(s) 87
DrdI GACNNNNNNGTC 1 cut(s) 786
DseDI GACNNNNNNGTC 1 cut(s) 786
EaeI YGGCCR 1 cut(s) 146
Eam1104I CTCTTC 4 cut(s) 25, 105, 507, 589
EarI CTCTTC 4 cut(s) 25, 105, 507, 589
EciI GGCGGA 2 cut(s) 354, 864
Ecl136II GAGCTC 1 cut(s) 657
Eco24I GRGCYC 1 cut(s) 659
Eco53kI GAGCTC 1 cut(s) 657
Eco57I CTGAAG 1 cut(s) 488
Eco81I CCTNAGG 1 cut(s) 826
EcoICRI GAGCTC 1 cut(s) 657
EcoT38I GRGCYC 1 cut(s) 659
Esp3I CGTCTC 2 cut(s) 57, 262
FaeI CATG 1 cut(s) 752
FaiI YATR 5 cut(s) 145, 605, 750, 867, 893
FaqI GGGAC 2 cut(s) 774, 870
FatI CATG 1 cut(s) 748
FauI CCCGC 1 cut(s) 353
FblI GTMKAC 1 cut(s) 604
Fnu4HI GCNGC 3 cut(s) 310, 465, 475
FokI GGATG 4 cut(s) 144, 153, 275, 797
FriOI GRGCYC 1 cut(s) 659
Fsp4HI GCNGC 3 cut(s) 310, 465, 475
FspBI CTAG 3 cut(s) 219, 329, 590
GlaI GCGC 1 cut(s) 802
GluI GCNGC 3 cut(s) 310, 465, 475
GsaI CCCAGC 1 cut(s) 9
GsuI CTGGAG 1 cut(s) 597
HaeIII GGCC 3 cut(s) 43, 148, 831
HapII CCGG 2 cut(s) 673, 813
HhaI GCGC 1 cut(s) 803
Hin1II CATG 1 cut(s) 752
Hin6I GCGC 1 cut(s) 801
HinP1I GCGC 1 cut(s) 801
HindIII AAGCTT 1 cut(s) 187
HinfI GANTC 5 cut(s) 266, 285, 364, 684, 964
HpaII CCGG 2 cut(s) 673, 813
HphI GGTGA 3 cut(s) 155, 664, 745
Hpy166II GTNNAC 2 cut(s) 605, 736
Hpy188I TCNGA 4 cut(s) 262, 543, 963, 1011
Hpy188III TCNNGA 2 cut(s) 353, 445
Hpy8I GTNNAC 2 cut(s) 605, 736
HpyCH4III ACNGT 4 cut(s) 153, 292, 383, 537
HpyCH4IV ACGT 3 cut(s) 255, 441, 617
HpyCH4V TGCA 3 cut(s) 411, 635, 692
HpyF10VI GCNNNNNNNGC 5 cut(s) 315, 572, 809, 828, 983
HpyF3I CTNAG 4 cut(s) 372, 648, 826, 1017
HpySE526I ACGT 3 cut(s) 255, 441, 617
Hsp92II CATG 1 cut(s) 752
HspAI GCGC 1 cut(s) 801
KroI GCCGGC 1 cut(s) 812
KroNI GCCGGC 1 cut(s) 814
Kzo9I GATC 5 cut(s) 34, 114, 214, 332, 772
LguI GCTCTTC 2 cut(s) 507, 589
LmnI GCTCC 4 cut(s) 572, 628, 709, 827
LweI GCATC 1 cut(s) 285
MaeI CTAG 3 cut(s) 219, 329, 590
MaeII ACGT 3 cut(s) 255, 441, 617
MaeIII GTNAC 1 cut(s) 531
MalI GATC 5 cut(s) 36, 116, 216, 334, 774
MboI GATC 5 cut(s) 34, 114, 214, 332, 772
MboII GAAGA 6 cut(s) 4, 42, 122, 264, 494, 576
MflI RGATCY 2 cut(s) 114, 214
MhlI GDGCHC 2 cut(s) 452, 659
MlsI TGGCCA 1 cut(s) 148
MluCI AATT 4 cut(s) 19, 82, 346, 491
MluI ACGCGT 2 cut(s) 201, 717
MluNI TGGCCA 1 cut(s) 148
MlyI GAGTC 4 cut(s) 260, 279, 693, 958
MmeI TCCRAC 2 cut(s) 606, 986
Mox20I TGGCCA 1 cut(s) 148
MreI CGCCGGCG 1 cut(s) 812
MroNI GCCGGC 1 cut(s) 812
MscI TGGCCA 1 cut(s) 148
MseI TTAA 2 cut(s) 86, 885
MslI CAYNNNNRTG 1 cut(s) 293
Msp20I TGGCCA 1 cut(s) 148
MspA1I CMGCKG 2 cut(s) 647, 970
MspI CCGG 2 cut(s) 673, 813
Mva1269I GAATGC 1 cut(s) 979
MvnI CGCG 4 cut(s) 203, 467, 477, 719
MwoI GCNNNNNNNGC 5 cut(s) 315, 572, 809, 828, 983
NaeI GCCGGC 1 cut(s) 814
NdeII GATC 5 cut(s) 34, 114, 214, 332, 772
NgoMIV GCCGGC 1 cut(s) 812
NlaIII CATG 1 cut(s) 752
NlaIV GGNNCC 3 cut(s) 216, 398, 459
NmeAIII GCCGAG 1 cut(s) 443
NspI RCATGY 1 cut(s) 752
PciSI GCTCTTC 2 cut(s) 507, 589
PctI GAATGC 1 cut(s) 979
PdiI GCCGGC 1 cut(s) 814
PfeI GAWTC 1 cut(s) 364
Pfl23II CGTACG 1 cut(s) 99
PkrI GCNGC 3 cut(s) 311, 466, 476
PleI GAGTC 4 cut(s) 260, 279, 692, 958
PpsI GAGTC 4 cut(s) 260, 279, 692, 958
PsiI TTATAA 1 cut(s) 893
Psp124BI GAGCTC 1 cut(s) 659
PspFI CCCAGC 1 cut(s) 5
PspLI CGTACG 1 cut(s) 99
PspN4I GGNNCC 3 cut(s) 216, 398, 459
PspPI GGNCC 1 cut(s) 41
PsuI RGATCY 2 cut(s) 114, 214
PvuII CAGCTG 1 cut(s) 647
RsaI GTAC 4 cut(s) 101, 716, 722, 991
RsaNI GTAC 4 cut(s) 100, 715, 721, 990
RseI CAYNNNNRTG 1 cut(s) 293
SacI GAGCTC 1 cut(s) 659
SapI GCTCTTC 2 cut(s) 507, 589
SaqAI TTAA 2 cut(s) 86, 885
SatI GCNGC 3 cut(s) 310, 465, 475
Sau3AI GATC 5 cut(s) 34, 114, 214, 332, 772
Sau96I GGNCC 1 cut(s) 41
SchI GAGTC 4 cut(s) 260, 279, 693, 958
SduI GDGCHC 2 cut(s) 452, 659
SfaNI GCATC 1 cut(s) 285
SgrAI CRCCGGYG 1 cut(s) 812
SmiMI CAYNNNNRTG 1 cut(s) 293
Sse9I AATT 4 cut(s) 19, 82, 346, 491
SspMI CTAG 3 cut(s) 219, 329, 590
SstI GAGCTC 1 cut(s) 659
TaaI ACNGT 4 cut(s) 153, 292, 383, 537
TaiI ACGT 3 cut(s) 258, 444, 620
TaqI TCGA 2 cut(s) 138, 942
TasI AATT 4 cut(s) 19, 82, 346, 491
TauI GCSGC 3 cut(s) 312, 467, 477
TfiI GAWTC 1 cut(s) 364
Tru1I TTAA 2 cut(s) 86, 885
Tru9I TTAA 2 cut(s) 86, 885
TscAI CASTG 3 cut(s) 295, 434, 694
TspDTI ATGAA 2 cut(s) 84, 359
TspGWI ACGGA 3 cut(s) 75, 117, 855
TspRI CASTG 3 cut(s) 295, 434, 694
XapI RAATTY 1 cut(s) 82
XceI RCATGY 1 cut(s) 752
XmiI GTMKAC 1 cut(s) 604
XspI CTAG 3 cut(s) 219, 329, 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.