Rorug06G0311300

Protein SHI RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0012802
Physical Location & Seq
Reverse (-)
46256395 .. 46257041
647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0311300.1

Sequence Viewer

Length: 411 bp
ATGTTCACTCTCGGCAAAGTGCTGATAGTTTTCTGGGAGGATTTTATTGCTGGTTTTTGGAAATCACAGCGGCCAAAAGCTGATAAATTTCCTCTTCTTATGCATCCAAAGAAGAAGGATGCTGCATTGGTTGAGTTGTACAGCCTTACAGAAGGTCAGGTAGTTTGTAAACTTAATCTCCCCGAAACCAAGGGTAAGGTCTGCTTTTCTTCTTTAGGTTGGCTGGTGACAGTATCGAAAGATGAAGGAGTTCTCACATTTAATCTGCTACATCCATTAAATCGTGCCAAAATTAAGCTTCCAGATGGAAGGACTGGTTTGCTGCAGTATCCCCTCGAGGACATATTGAACTCCACATTGTGGTTTGTGATGATGATTGCCACACTTGTTCCCCATTGGCATAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF702

Protein Analysis

136

Amino Acids

15.51

Weight (kDa)

9.3

Isoelectric Point (pI)

30.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 46 - 103 2e-06 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012802)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19790 AT1G19790 AT1G75520
fragaria_vesca FvH4_2g38950
malus_domestica MD08G1021500.v1.1 MD15G1019200.v1.1
prunus_persica Prupe.1G371500_v2.0.a1 Prupe.1G371500_v2.0.a1
pyrus_communis pycom08g01700 pycom15g01600
rosa_chinensis RchiOBHm_Chr6g0302041
rosa_laevigata RLG00000011200
rosa_multiflora Rmu_ssc0000160.1_g000001
rosa_roxburghii Rroxscaffold_7G00166150
rosa_rugosa Rorug06G0311300
rosa_samantha Rh6AG424100 Rh6CG437100
rosa_wichuraiana Rw6G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 335
AccB7I CCANNNNNTGG 1 cut(s) 360
AciI CCGC 1 cut(s) 70
AcoI YGGCCR 1 cut(s) 71
AcsI RAATTY 1 cut(s) 86
AdeI CACNNNGTG 1 cut(s) 360
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 360
AgsI TTSAA 1 cut(s) 349
AluBI AGCT 3 cut(s) 80, 298, 407
AluI AGCT 3 cut(s) 80, 298, 407
Ama87I CYCGRG 1 cut(s) 335
AoxI GGCC 1 cut(s) 71
ApeKI GCWGC 2 cut(s) 122, 322
ApoI RAATTY 1 cut(s) 86
Asp700I GAANNNNTTC 1 cut(s) 249
AsuHPI GGTGA 1 cut(s) 238
AvaI CYCGRG 1 cut(s) 335
BbvI GCAGC 2 cut(s) 109, 309
BccI CCATC 1 cut(s) 299
BciVI GTATCC 1 cut(s) 339
BfmI CTRYAG 1 cut(s) 323
BfuI GTATCC 1 cut(s) 339
BisI GCNGC 3 cut(s) 71, 123, 323
BlsI GCNGC 3 cut(s) 72, 124, 324
BmeT110I CYCGRG 1 cut(s) 335
BmsI GCATC 2 cut(s) 109, 112
BsaJI CCNNGG 1 cut(s) 189
BsaXI ACNNNNNCTCC 2 cut(s) 162, 192
Bsc4I CCNNNNNNNGG 1 cut(s) 360
Bse1I ACTGG 1 cut(s) 319
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 3 cut(s) 103, 124, 271
BseLI CCNNNNNNNGG 1 cut(s) 360
BseNI ACTGG 1 cut(s) 319
BseXI GCAGC 2 cut(s) 109, 309
BshFI GGCC 1 cut(s) 73
BsiHKCI CYCGRG 1 cut(s) 335
BslI CCNNNNNNNGG 1 cut(s) 360
BsnI GGCC 1 cut(s) 73
BsoBI CYCGRG 1 cut(s) 335
Bsp1407I TGTACA 1 cut(s) 138
BspACI CCGC 1 cut(s) 70
BspANI GGCC 1 cut(s) 73
BspMAI CTGCAG 1 cut(s) 327
BsrGI TGTACA 1 cut(s) 138
BsrI ACTGG 1 cut(s) 319
BssECI CCNNGG 1 cut(s) 189
BssT1I CCWWGG 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 232
Bst6I CTCTTC 1 cut(s) 99
BstAUI TGTACA 1 cut(s) 138
BstF5I GGATG 3 cut(s) 103, 124, 271
BstSFI CTRYAG 1 cut(s) 323
BstV1I GCAGC 2 cut(s) 109, 309
BsuI GTATCC 1 cut(s) 339
BsuRI GGCC 1 cut(s) 73
BtsCI GGATG 3 cut(s) 103, 124, 271
Csp6I GTAC 1 cut(s) 139
CviJI RGCY 6 cut(s) 73, 80, 144, 223, 298, 407
CviKI_1 RGCY 6 cut(s) 73, 80, 144, 223, 298, 407
CviQI GTAC 1 cut(s) 139
DraIII CACNNNGTG 1 cut(s) 360
EaeI YGGCCR 1 cut(s) 71
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 189
Eco88I CYCGRG 1 cut(s) 335
EcoT14I CCWWGG 1 cut(s) 189
EcoT22I ATGCAT 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 189
FaiI YATR 3 cut(s) 101, 344, 402
FalI AAGNNNNNCTT 2 cut(s) 188, 220
Fnu4HI GCNGC 3 cut(s) 71, 123, 323
FokI GGATG 3 cut(s) 90, 131, 258
Fsp4HI GCNGC 3 cut(s) 71, 123, 323
GluI GCNGC 3 cut(s) 71, 123, 323
HaeIII GGCC 1 cut(s) 73
HindIII AAGCTT 2 cut(s) 296, 405
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 2 cut(s) 6, 170
Hpy188III TCNNGA 1 cut(s) 302
Hpy8I GTNNAC 2 cut(s) 6, 170
HpyAV CCTTC 4 cut(s) 109, 146, 239, 303
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4V TGCA 3 cut(s) 103, 125, 325
LpnPI CCDG 6 cut(s) 19, 36, 143, 209, 300, 315
Lsp1109I GCAGC 2 cut(s) 109, 309
LweI GCATC 2 cut(s) 109, 112
MaeIII GTNAC 1 cut(s) 226
MboII GAAGA 3 cut(s) 86, 124, 201
MluCI AATT 2 cut(s) 86, 291
MnlI CCTC 4 cut(s) 31, 102, 331, 344
Mph1103I ATGCAT 1 cut(s) 105
MroXI GAANNNNTTC 1 cut(s) 249
MseI TTAA 4 cut(s) 174, 261, 278, 294
MspA1I CMGCKG 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 226
NsiI ATGCAT 1 cut(s) 105
PaeR7I CTCGAG 1 cut(s) 335
PdmI GAANNNNTTC 1 cut(s) 249
PflMI CCANNNNNTGG 1 cut(s) 360
PkrI GCNGC 3 cut(s) 72, 124, 324
PspXI VCTCGAGB 1 cut(s) 335
PstI CTGCAG 1 cut(s) 327
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
SaqAI TTAA 4 cut(s) 174, 261, 278, 294
SatI GCNGC 3 cut(s) 71, 123, 323
SetI ASST 7 cut(s) 82, 157, 162, 201, 220, 300, 409
SfaNI GCATC 2 cut(s) 109, 112
SfcI CTRYAG 1 cut(s) 323
Sfr274I CTCGAG 1 cut(s) 335
SlaI CTCGAG 1 cut(s) 335
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse9I AATT 2 cut(s) 86, 291
SsiI CCGC 1 cut(s) 70
StyI CCWWGG 1 cut(s) 189
TaaI ACNGT 1 cut(s) 232
TaqI TCGA 2 cut(s) 236, 336
TasI AATT 2 cut(s) 86, 291
TatI WGTACW 1 cut(s) 138
TauI GCSGC 1 cut(s) 73
Tru1I TTAA 4 cut(s) 174, 261, 278, 294
Tru9I TTAA 4 cut(s) 174, 261, 278, 294
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 2 cut(s) 122, 322
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 258
Van91I CCANNNNNTGG 1 cut(s) 360
XapI RAATTY 1 cut(s) 86
XhoI CTCGAG 1 cut(s) 335
XmnI GAANNNNTTC 1 cut(s) 249
Zsp2I ATGCAT 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.